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Lipids




         1
Functions of Lipids
• Energy storage
  – In the form of fat in humans
    and oil in plants
• Heat insulation
  – A layer of fat under the skin
    reduces heat loss
• Buoyancy
  – Lipids are less dense than
    water to help animals to
    float
• To provide a layer of
  protection
  – Fat on your body
  – Membranes in cells              2
Triglycerides (FAT)




                      3
Examples of saturated and unsaturated fats
             and fatty acids




                                        4
The structure of a phospholipid




                              5
Two structures formed by self-assembly of
phospholipids in aqueous environments




                                       6
Cholesterol, a steroid




                         7
Steroids include cholesterol and
         certain hormones
• Steroids are lipids with a carbon
  skeleton consisting of four fused
  carbon rings.
  – Different steroids are created by varying
    functional groups attached to the rings
• Cholesterol, an important steroid, is a
  component in animal cell membranes.
• Cholesterol is also the precursor from
  which all other steroids are
  synthesized.
    www.pearsonsuccessnet.com activity 5.3 page 3   8
Using Carbohydrates and Lipids
           in Energy Storage
• Both lipids and     Advantages of             Advantages of
  carbs can be
  used for energy     Lipids                    Carbs
  storage in living   Lipids contain more       Carbohydrates are
  organisms.          energy per gram than      more easily digested
  Both types of       carbs so stores of        than lipids so the
  storage             lipids are lighter than   energy stored by them
  compound have       stores of carbs that      can be released more
  advantages.         contain the same          rapidly
  Carbohydrates       amount of energy          4 kcal/g
  are usually for     9 kcal/g
  energy storage      Lipids are insoluble in   Carbohydrates are
  over short          water, so they do not     soluble in water so are
  periods and         cause problems with       easier to transport to
  lipids for long-    osmosis in cells          and from the storage
  term storage                                  area                 9
Proteins




           10
basic structure of
 an amino acid
                              R-group changes depending
                              upon the amino acid



                              R          O
                 H
                       N      C      C
                 H                       OH
                              H
           amine functional            carboxylic acid
               group                  functional group


                                                          11
• The R-group (outlined in white) changes the
  properties of each amino acid
• ex: nonpolar groups are hydrophobic           12
• polar R-groups are hydrophilic
• electrically charged R-group will interact with
  molecules of opposite charge                  13
peptide bond formation




 amino acid chain =
 polypeptide chain




                      14
The primary
  structure of a
 protein: CHAIN
• primary protein
  structure:
  – polypeptide chain
• The folding of a
  protein from a chain
  of amino acids
  occurs
  spontaneously
• The precise primary
  structure of a
  protein is
  determined by
  inherited genetic
                    15
  information.
• The secondary
   Secondary Structure:          structure of a
α Helix and β Pleated Sheets     protein results
                                 from hydrogen
                                 bonds at
                                 regular
                                 intervals along
                                 the
                                 polypeptide
                                 backbone.
                               • Typical shapes
                                 that develop
                                 from
                                 secondary
                                 structure are
                                 coils (an alpha
                                 helix) or folds
                                 (beta pleated
                                 sheets).
                                           16
Tertiary Structure: Twists in on itself
• Tertiary
  structure is
  determined
  by a variety
  of
  interactions
  among R
  groups and
  between R
  groups and
  the
  polypeptide
  backbone.
                                               17
The quaternary structure of proteins:
      multiple chains together




                                    18
Spider silk: a structural protein
• The structural properties of silk are due to beta
  pleated sheets.
  – The presence of so many hydrogen bonds makes each
    silk fiber stronger than steel.




                                                                 19
 http://www.sciencedaily.com/releases/2008/02/080214114448.htm
A protein’s function depends on its specific
               conformation
 • A functional proteins consists of one or more
   polypeptides that have been precisely twisted,
   folded, and coiled into a unique shape.
 • It is the order of amino acids that determines
   what the three-dimensional conformation will
   be.




                                               20
At present, scientists use X-ray crystallography to
        determine protein conformation.




                                                21
Denaturation and renaturation of
           a protein




                               22
An Overview of Protein Functions




                                   23
24
25
26
27
28
29
enzymes: specialized proteins




ribonuclease

                                       30
31
Nucleic Acids

                32
The Nucleotide Subunits of DNA
• Although DNA is the genetic
  material of living organisms and
  is therefore of immense
  importance, it is made of
  relatively simple subunits
• These are called nucleotides
                                   P
• Each nucleotide consists of
  three parts:                                 B
                                           S
   – A sugar, deoxyribose
   – A phosphate group
   – And a nitrogen base
• DNA nucleotides do not all have
  the same base
• Four different bases are found
                                                   33
   – Adenine, guanine, cytosine, thymine
nucleotide
                  monomer
phosphate group


     PO4                      nitrogen base
                CH2
           5’



            4’                 1’


                 3’      2’
                 OH
           deoxyribose sugar
       Numbering the carbons on
       deoxyribose:
       1’ = nitrogen base
       3’ = hydroxyl group            34
       5’ = phosphate group
35
Building DNA Molecules
• Two DNA nucleotides can be
  linked together by a covalent
  bond between the sugar of one
  nucleotide and the phosphate
  group of the other
• More nucleotides can be added
  in a similar way to form a
  strand of nucleotides
• DNA molecules consist of two
  strands of nucleotides wound
  together into a double helix
• Hydrogen bonds link the two
  strands together
• These form between the bases
  of the two strands
• However, adenine only forms
  hydrogen bonds with thymine
  and cytosine only forms
  hydrogen bonds with guanine
• This is called complementary
  base pairing
                                    36
•The bonds between
 5’   the phosphate group
      and the deoxyribose
      sugar on an
      individual nucleotide
      is a covalent bond –
      phosphodiester
      bond.
      •Phosphodiester
      bonds are arranged
       phosphate –
      oxygen – carbon.
      •Bonding nucleotides
      together:
      occurs between 3’
      OH group on one
      nucleotide and 5’
      phosphate group on
      the other through a     •Strands run antiparallel to each
      condensation            other = one strand has the 5’ C on
      reaction (release of    the top, 3’ C on the bottom, and
      water)                  the other is reversed

3’    •There will always be
      a free 5’ end 3’ on
                                                        37
      each strand of DNA
NUCLEOSOME STRUCTURE:
- 8 histones, (+) charged, (protein) in the core
    - 2 molecules of 4 different histones
- DNA, (-) charged, wraps around the core 2x
- 1 histone holds the 2 ends of the DNA, histone H1
- with 2 ends of linker DNA
- nucleosomes help to supercoil chromosomes and help to
                                                    38
regulate transcription
In nuclear DNA there are three types:
1. Unique/Single-copy genes:
   - genes with coding functions
   - essential to producing proteins
   - Human Genome Project: to sequence all the coding genes, less than 2% of
   chromosomes are coding genes
   - Coding parts of DNA are not strung together neatly; there are noncoding
   regions interspersed within between coding regions
   - coding parts = EXONS; noncoding parts = INTRONS
   - EXONS are allowed to EXIT the nucleus to be translated into a protein
   - INTRONS must stay IN the nucleus because they don’t code for a protein
2. Highly repetitive sequences:
   - found in eukaryotes
   - from 5%-45% of the total genome
   - 5-300 base pairs per sequence
   - Clustered together? = satellite DNA
   - usually dispersed throughout the
   genome = transposable
         - Barbara McClintock; 1950
                                                                               39
RNA
• Usually single
  strands
• Unlike DNA,
  contains the
  pyrimidine
  base uracil in
  place of
  thymine
• Contains
  ribose sugar
  rather than
  deoxyribose
  sugar
• Three types
  are key players
  in protein        40
  synthesis

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Lipids Functions and Structures

  • 1. Lipids 1
  • 2. Functions of Lipids • Energy storage – In the form of fat in humans and oil in plants • Heat insulation – A layer of fat under the skin reduces heat loss • Buoyancy – Lipids are less dense than water to help animals to float • To provide a layer of protection – Fat on your body – Membranes in cells 2
  • 4. Examples of saturated and unsaturated fats and fatty acids 4
  • 5. The structure of a phospholipid 5
  • 6. Two structures formed by self-assembly of phospholipids in aqueous environments 6
  • 8. Steroids include cholesterol and certain hormones • Steroids are lipids with a carbon skeleton consisting of four fused carbon rings. – Different steroids are created by varying functional groups attached to the rings • Cholesterol, an important steroid, is a component in animal cell membranes. • Cholesterol is also the precursor from which all other steroids are synthesized. www.pearsonsuccessnet.com activity 5.3 page 3 8
  • 9. Using Carbohydrates and Lipids in Energy Storage • Both lipids and Advantages of Advantages of carbs can be used for energy Lipids Carbs storage in living Lipids contain more Carbohydrates are organisms. energy per gram than more easily digested Both types of carbs so stores of than lipids so the storage lipids are lighter than energy stored by them compound have stores of carbs that can be released more advantages. contain the same rapidly Carbohydrates amount of energy 4 kcal/g are usually for 9 kcal/g energy storage Lipids are insoluble in Carbohydrates are over short water, so they do not soluble in water so are periods and cause problems with easier to transport to lipids for long- osmosis in cells and from the storage term storage area 9
  • 10. Proteins 10
  • 11. basic structure of an amino acid R-group changes depending upon the amino acid R O H N C C H OH H amine functional carboxylic acid group functional group 11
  • 12. • The R-group (outlined in white) changes the properties of each amino acid • ex: nonpolar groups are hydrophobic 12
  • 13. • polar R-groups are hydrophilic • electrically charged R-group will interact with molecules of opposite charge 13
  • 14. peptide bond formation amino acid chain = polypeptide chain 14
  • 15. The primary structure of a protein: CHAIN • primary protein structure: – polypeptide chain • The folding of a protein from a chain of amino acids occurs spontaneously • The precise primary structure of a protein is determined by inherited genetic 15 information.
  • 16. • The secondary Secondary Structure: structure of a α Helix and β Pleated Sheets protein results from hydrogen bonds at regular intervals along the polypeptide backbone. • Typical shapes that develop from secondary structure are coils (an alpha helix) or folds (beta pleated sheets). 16
  • 17. Tertiary Structure: Twists in on itself • Tertiary structure is determined by a variety of interactions among R groups and between R groups and the polypeptide backbone. 17
  • 18. The quaternary structure of proteins: multiple chains together 18
  • 19. Spider silk: a structural protein • The structural properties of silk are due to beta pleated sheets. – The presence of so many hydrogen bonds makes each silk fiber stronger than steel. 19 http://www.sciencedaily.com/releases/2008/02/080214114448.htm
  • 20. A protein’s function depends on its specific conformation • A functional proteins consists of one or more polypeptides that have been precisely twisted, folded, and coiled into a unique shape. • It is the order of amino acids that determines what the three-dimensional conformation will be. 20
  • 21. At present, scientists use X-ray crystallography to determine protein conformation. 21
  • 22. Denaturation and renaturation of a protein 22
  • 23. An Overview of Protein Functions 23
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  • 33. The Nucleotide Subunits of DNA • Although DNA is the genetic material of living organisms and is therefore of immense importance, it is made of relatively simple subunits • These are called nucleotides P • Each nucleotide consists of three parts: B S – A sugar, deoxyribose – A phosphate group – And a nitrogen base • DNA nucleotides do not all have the same base • Four different bases are found 33 – Adenine, guanine, cytosine, thymine
  • 34. nucleotide monomer phosphate group PO4 nitrogen base CH2 5’ 4’ 1’ 3’ 2’ OH deoxyribose sugar Numbering the carbons on deoxyribose: 1’ = nitrogen base 3’ = hydroxyl group 34 5’ = phosphate group
  • 35. 35
  • 36. Building DNA Molecules • Two DNA nucleotides can be linked together by a covalent bond between the sugar of one nucleotide and the phosphate group of the other • More nucleotides can be added in a similar way to form a strand of nucleotides • DNA molecules consist of two strands of nucleotides wound together into a double helix • Hydrogen bonds link the two strands together • These form between the bases of the two strands • However, adenine only forms hydrogen bonds with thymine and cytosine only forms hydrogen bonds with guanine • This is called complementary base pairing 36
  • 37. •The bonds between 5’ the phosphate group and the deoxyribose sugar on an individual nucleotide is a covalent bond – phosphodiester bond. •Phosphodiester bonds are arranged  phosphate – oxygen – carbon. •Bonding nucleotides together: occurs between 3’ OH group on one nucleotide and 5’ phosphate group on the other through a •Strands run antiparallel to each condensation other = one strand has the 5’ C on reaction (release of the top, 3’ C on the bottom, and water) the other is reversed 3’ •There will always be a free 5’ end 3’ on 37 each strand of DNA
  • 38. NUCLEOSOME STRUCTURE: - 8 histones, (+) charged, (protein) in the core - 2 molecules of 4 different histones - DNA, (-) charged, wraps around the core 2x - 1 histone holds the 2 ends of the DNA, histone H1 - with 2 ends of linker DNA - nucleosomes help to supercoil chromosomes and help to 38 regulate transcription
  • 39. In nuclear DNA there are three types: 1. Unique/Single-copy genes: - genes with coding functions - essential to producing proteins - Human Genome Project: to sequence all the coding genes, less than 2% of chromosomes are coding genes - Coding parts of DNA are not strung together neatly; there are noncoding regions interspersed within between coding regions - coding parts = EXONS; noncoding parts = INTRONS - EXONS are allowed to EXIT the nucleus to be translated into a protein - INTRONS must stay IN the nucleus because they don’t code for a protein 2. Highly repetitive sequences: - found in eukaryotes - from 5%-45% of the total genome - 5-300 base pairs per sequence - Clustered together? = satellite DNA - usually dispersed throughout the genome = transposable - Barbara McClintock; 1950 39
  • 40. RNA • Usually single strands • Unlike DNA, contains the pyrimidine base uracil in place of thymine • Contains ribose sugar rather than deoxyribose sugar • Three types are key players in protein 40 synthesis