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Analysis of ‘Unstructured’ Data Seth Grimes Alta Plana Corporation 301-270-0795 --  http://altaplana.com ASA Chicago Chapter Proliferation of Digital Information and Recent Uses in Statistical Applications  May 15, 2009
Introduction ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Perspectives ,[object Object],[object Object],[object Object],[object Object],[object Object]
Context ,[object Object],[object Object],[object Object],[object Object],[object Object]
Are these data sets? “ Unstructured” data
Are these data sets? “ Unstructured” data
www.stanford.edu/%7ernusse/wntwindow.html Axin and Frat1 interact with dvl and GSK, bridging Dvl to GSK in Wnt-mediated regulation of LEF-1. Wnt proteins transduce their signals through dishevelled (Dvl) proteins to inhibit glycogen synthase kinase 3beta (GSK), leading to the accumulation of cytosolic beta-catenin and activation of TCF/LEF-1 transcription factors. To understand the mechanism by which Dvl acts through GSK to regulate LEF-1, we investigated the roles of Axin and Frat1 in Wnt-mediated activation of LEF-1 in mammalian cells. We found that Dvl interacts with Axin and with Frat1, both of which interact with GSK. Similarly, the Frat1 homolog GBP binds Xenopus Dishevelled in an interaction that requires GSK. We also found that Dvl, Axin and GSK can form a ternary complex bridged by Axin, and that Frat1 can be recruited into this complex probably by Dvl. The observation that the Dvl-binding domain of either Frat1 or Axin was able to inhibit Wnt-1-induced LEF-1 activation suggests that the interactions between Dvl and Axin and between Dvl and Frat may be important for this signaling pathway. Furthermore, Wnt-1 appeared to promote the disintegration of the Frat1-Dvl-GSK-Axin complex, resulting in the dissociation of GSK from Axin. Thus, formation of the quaternary complex may be an important step in Wnt signaling, by which Dvl recruits Frat1, leading to Frat1-mediated dissociation of GSK from Axin. www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Retrieve&list_uids=10428961&dopt=Abstract More “unstructured” data
 
 
Text descriptive statistics ,[object Object],[object Object],[object Object],[object Object]
New York Times , September 8, 1957
“ Statistical information derived from word frequency and distribution is used by the machine to compute a relative measure of significance, first for individual words and then for sentences. Sentences scoring highest in significance are extracted and printed out to become the auto-abstract.” H.P. Luhn,  The Automatic Creation of Literature Abstracts ,  IBM Journal , 1958.
Text-BI:  Back to the Future ,[object Object],[object Object],[object Object]
Document input and processing Knowledge handling is key
 
Text modelling The text content of a document can be considered an unordered “bag of words.” Particular documents are points in a high-dimensional vector space. Salton, Wong & Yang, “A Vector Space Model for Automatic Indexing,” November 1975.
Text modelling ,[object Object],[object Object],[object Object],[object Object],[object Object],http://en.wikipedia.org/wiki/Term-document_matrix I like hate databases D1 1 1 0 1 D2 1 0 2 1
Text modelling ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Text modelling ,[object Object],[object Object],[object Object]
[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Unstructured sources
Unstructured sources ,[object Object],[object Object],[object Object]
The “unstructured” data challenge ,[object Object],[object Object],[object Object]
Applications ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Search is not the answer Relevance? Concepts? Articles from a forum site Articles from 1987
Search ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Search ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Smarter search Text analytics enables results that suit the information and the user, e.g., answers –
Presentation of search results can be enhanced by discovery. This slide and the next show dynamic, clustered search results from Grokker… live.grokker.com/grokker.html?query=text%20analytics&Yahoo=true&Wikipedia=true&numResults=250
… with a zoomable display. Clustering here utilizes statistical (text) data mining techniques to identifying cohesive groupings of retrieved documents.
More results clustering... A dynamic network viz.: the Touch-Graph Google-Browser applet touchgraph.com/ TGGoogleBrowser.php ?start=text%20analytics
Beyond search
Data  Mining Text  Mining Data Retrieval Information Retrieval Search/Query (goal-oriented) ‏ Discovery (opportunistic) ‏ Fielded Data Documents Based on Je Wei Liang,  www.database.cis.nctu.edu.tw/seminars/2003F/TWM/slides/p.ppt Text mining
Semantic Search BI Search Data  Mining Text  Mining Data Retrieval Information Retrieval Search/Query (goal-oriented) Discovery (opportunistic) Fielded Data Documents Where’s Text Analytics? Text analytics
Text analytics ,[object Object],[object Object],[object Object],[object Object]
Text analytics ,[object Object],[object Object],[object Object],[object Object],[object Object]
Text analytics ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
New York Times , September 8, 1957 Anaphora / coreference External reference
 
 
 
Information extraction When we understand, for instance, parts of speech – <subject> <verb> <object> – we’re in a position to discern facts and relationships. Let's see text augmentation (tagging) in action.  We'll use GATE, an open-source tool...
 
 
 
 
Example: E-mail ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Example: E-mail ,[object Object],[object Object],[object Object]
Example: Survey The respondent is invited to explain his/her attitude:
Example: Survey ,[object Object],[object Object],[object Object],[object Object]
[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Attitudinal data
[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Attitudinal data
[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Sentiment and opinion
[object Object],[object Object],[object Object],Example: law enforcement
Example: law enforcement An Attensity  law- enforcement  example –  NLP to  identify roles and relationships.
Example: law enforcement
[object Object],[object Object],[object Object],[object Object],Case study: IBM’s MedTAKMI
MEDLINE from the National Center for Biotechnology Information hosts links to many widely used information sources such as the  PubMed database of 18 million biomedical journal abstracts.  Visit  www.ncbi.nlm.nih.gov . Case study: IBM’s MedTAKMI
 
 
[object Object],[object Object],[object Object],VOC research study
Information analyzed
ROI measured, planned & achieved
Solution providers What should a prospective user look for? Response Percent deep sentiment/opinion extraction  80% ability to use specialized dictionaries or taxonomies 76% broad information extraction capability 60% adaptation for particular sectors, e.g., hospitality, retail, health care,  communications 56% predictive-analytics integration 48% BI (business intelligence) integration 48% support for multiple languages 48% ability to create custom workflows 32% low cost 32% hosted or &quot;as a service&quot; option 32% specialized VoC analysis interface 24%
Key message ,[object Object],[object Object],[object Object],[object Object],[object Object]
The vendor marketplace

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Analysis of ‘Unstructured’ Data

  • 1. Analysis of ‘Unstructured’ Data Seth Grimes Alta Plana Corporation 301-270-0795 -- http://altaplana.com ASA Chicago Chapter Proliferation of Digital Information and Recent Uses in Statistical Applications May 15, 2009
  • 2.
  • 3.
  • 4.
  • 5. Are these data sets? “ Unstructured” data
  • 6. Are these data sets? “ Unstructured” data
  • 7. www.stanford.edu/%7ernusse/wntwindow.html Axin and Frat1 interact with dvl and GSK, bridging Dvl to GSK in Wnt-mediated regulation of LEF-1. Wnt proteins transduce their signals through dishevelled (Dvl) proteins to inhibit glycogen synthase kinase 3beta (GSK), leading to the accumulation of cytosolic beta-catenin and activation of TCF/LEF-1 transcription factors. To understand the mechanism by which Dvl acts through GSK to regulate LEF-1, we investigated the roles of Axin and Frat1 in Wnt-mediated activation of LEF-1 in mammalian cells. We found that Dvl interacts with Axin and with Frat1, both of which interact with GSK. Similarly, the Frat1 homolog GBP binds Xenopus Dishevelled in an interaction that requires GSK. We also found that Dvl, Axin and GSK can form a ternary complex bridged by Axin, and that Frat1 can be recruited into this complex probably by Dvl. The observation that the Dvl-binding domain of either Frat1 or Axin was able to inhibit Wnt-1-induced LEF-1 activation suggests that the interactions between Dvl and Axin and between Dvl and Frat may be important for this signaling pathway. Furthermore, Wnt-1 appeared to promote the disintegration of the Frat1-Dvl-GSK-Axin complex, resulting in the dissociation of GSK from Axin. Thus, formation of the quaternary complex may be an important step in Wnt signaling, by which Dvl recruits Frat1, leading to Frat1-mediated dissociation of GSK from Axin. www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Retrieve&list_uids=10428961&dopt=Abstract More “unstructured” data
  • 8.  
  • 9.  
  • 10.
  • 11. New York Times , September 8, 1957
  • 12. “ Statistical information derived from word frequency and distribution is used by the machine to compute a relative measure of significance, first for individual words and then for sentences. Sentences scoring highest in significance are extracted and printed out to become the auto-abstract.” H.P. Luhn, The Automatic Creation of Literature Abstracts , IBM Journal , 1958.
  • 13.
  • 14. Document input and processing Knowledge handling is key
  • 15.  
  • 16. Text modelling The text content of a document can be considered an unordered “bag of words.” Particular documents are points in a high-dimensional vector space. Salton, Wong & Yang, “A Vector Space Model for Automatic Indexing,” November 1975.
  • 17.
  • 18.
  • 19.
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  • 21.
  • 22.
  • 23.
  • 24. Search is not the answer Relevance? Concepts? Articles from a forum site Articles from 1987
  • 25.
  • 26.
  • 27. Smarter search Text analytics enables results that suit the information and the user, e.g., answers –
  • 28. Presentation of search results can be enhanced by discovery. This slide and the next show dynamic, clustered search results from Grokker… live.grokker.com/grokker.html?query=text%20analytics&Yahoo=true&Wikipedia=true&numResults=250
  • 29. … with a zoomable display. Clustering here utilizes statistical (text) data mining techniques to identifying cohesive groupings of retrieved documents.
  • 30. More results clustering... A dynamic network viz.: the Touch-Graph Google-Browser applet touchgraph.com/ TGGoogleBrowser.php ?start=text%20analytics
  • 32. Data Mining Text Mining Data Retrieval Information Retrieval Search/Query (goal-oriented) ‏ Discovery (opportunistic) ‏ Fielded Data Documents Based on Je Wei Liang, www.database.cis.nctu.edu.tw/seminars/2003F/TWM/slides/p.ppt Text mining
  • 33. Semantic Search BI Search Data Mining Text Mining Data Retrieval Information Retrieval Search/Query (goal-oriented) Discovery (opportunistic) Fielded Data Documents Where’s Text Analytics? Text analytics
  • 34.
  • 35.
  • 36.
  • 37. New York Times , September 8, 1957 Anaphora / coreference External reference
  • 38.  
  • 39.  
  • 40.  
  • 41. Information extraction When we understand, for instance, parts of speech – <subject> <verb> <object> – we’re in a position to discern facts and relationships. Let's see text augmentation (tagging) in action. We'll use GATE, an open-source tool...
  • 42.  
  • 43.  
  • 44.  
  • 45.  
  • 46.
  • 47.
  • 48. Example: Survey The respondent is invited to explain his/her attitude:
  • 49.
  • 50.
  • 51.
  • 52.
  • 53.
  • 54. Example: law enforcement An Attensity law- enforcement example – NLP to identify roles and relationships.
  • 56.
  • 57. MEDLINE from the National Center for Biotechnology Information hosts links to many widely used information sources such as the PubMed database of 18 million biomedical journal abstracts. Visit www.ncbi.nlm.nih.gov . Case study: IBM’s MedTAKMI
  • 58.  
  • 59.  
  • 60.
  • 62. ROI measured, planned & achieved
  • 63. Solution providers What should a prospective user look for? Response Percent deep sentiment/opinion extraction 80% ability to use specialized dictionaries or taxonomies 76% broad information extraction capability 60% adaptation for particular sectors, e.g., hospitality, retail, health care, communications 56% predictive-analytics integration 48% BI (business intelligence) integration 48% support for multiple languages 48% ability to create custom workflows 32% low cost 32% hosted or &quot;as a service&quot; option 32% specialized VoC analysis interface 24%
  • 64.

Notas do Editor

  1. This course is, in essence, about the information enterprises have and how they use it and how they could better use it. First we look at enterprise information in light of business goals in order to characterize the “unstructured” information gap. We then look at how that information, or at least the textual variety, may be structured for use. Then we look at a few uses, at enriching search, surely one of today’s killer apps, and at enhancing business intelligence via search.
  2. This course is, in essence, about the information enterprises have and how they use it and how they could better use it. First we look at enterprise information in light of business goals in order to characterize the “unstructured” information gap. We then look at how that information, or at least the textual variety, may be structured for use. Then we look at a few uses, at enriching search, surely one of today’s killer apps, and at enhancing business intelligence via search.
  3. We earlier used a diagram that showed the relationship between search and discovery and operations on fielded data and on free-text documents. We will take those two methods, search and discovery, and add a third, analysis to the picture. In the intersection of search and analysis we have BI search and in the intersection of search and discovery we have semantic search.