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Getting data into the repository:
things to ponder
Indira Yerramareddy, Manger of Knowledge Management and Web
Nilam Prasai, Senior Data Curator
International Food Policy Research Institute (IFPRI)
May 16, 2019
Research data management
Care and maintenance of the data that is produced
during the research
Describes collection, organization, storage,
documentation, dissemination and preservation of
research data
Defines the quality and after-life of research data
Should be considered in each and every steps of
research
Research data lifecycle
 The principles emphasise machine-actionability (i.e., the capacity of
computational systems to find, access, interoperate, and reuse data with
none or minimal human intervention) because humans increasingly rely on
computational support to deal with data as a result of the increase in
volume, complexity, and creation speed of data.
Fig. Research Data Lifecycle
FAIR principles (what)
set of guiding principles for scientific data management
and stewardship to ensure that data are
oFINDABLE (F)
oACCESSIBLE (A)
oINTEROPERABLE (I)
oREUSABLE (R)
developed and endorsed by researchers, publishers,
funding agencies and others
put emphasis on machine-actionability on datasets
FAIR principles (why)
help to increase the visibility of research
help to save time and resources by minimizing
duplicate data collection and research
help to innovate and discover by providing data needed
to answer research questions
help to attain maximum potential of any data assets
help to achieve maximum impact of research
help to improve the reproducibility of research
help to follow international standards, protocols and
best practices
FAIR principles (how)
Findable
• Metadata
• Persistent
identifier
• Repository
Accessible
• Machine and
human
readable
metadata
and data
• Long term
storage and
preservation
Interoperable
• Metadata
schema
• Standard
vocabulary
and ontology
• Interoperable
repository
Reusable
• Data use
license
• Metadata
with accurate
and relevant
attributes
https://www.force11.org/group/fairgroup/fairprinciples
Key things to ponder when publishing
research data
Informed consent
Data anonymization
Intellectual property, ownership and copyrights
Contractual and legal compliance
Data files, documentations and metadata
Do I have informed consent to share
data?
Scientists are required to protect the confidentiality
of the respondents
Language in informed consent can limit scientist’s
ability to share data
Use language in informed consent: such as “We
may share de-identified data we collect from
you…”
Identified and sensitive datasets can be shared
only under restrictive settings
Is the data completely deidentified?
Should not compromise confidentiality/privacy
of respondents
Direct and indirect identifiers should not be
present in datasets that are openly public
Controlled sharing should be done for datasets
that can’t be deidentified completely
Always use non-disclosure agreement while
sharing identified datasets
Who owns the data? Intellectual
property and copyrights
Confirm who has the rights and ownership to
the data
Confirm what intellectual property and
copyrights applies to data
Confirm if you plan to apply patent for the
dataset, data collection methodology etc
Is their any legal and contractual
provision related to data publishing?
Provisions in the contract
oData security, protection, retention, transfer,
sharing
oConfirm if permission is needed from
collaborators for data publishing
Legal regulations
oData security, protection, retention, transfer,
sharing
Preparing data for publishing
Preparing data files
Preparing documentations
Preparing metadata
Preparing data files
File format
File name
Variable name
Data values and codes
Special types of data
Anonymization
Preparing documentation: key
elements to consider
Context
Data collection methods
Structure of data
Quality controls
Versions
Access and use conditions
Preparing documentation: key
documents to include
Codebook(s)
Data collection instruments
Sampling methodology
Interviewer manual
Summary report
Working papers
Project reports and publications
Preparing metadata: minimum
metadata elements
Title
Authors/Contributors
Description
Funder
Keywords
Topics
Sample and sampling
procedure
Data collection date
Time period covered in
the datasets
Geographic coverage
Geographic unit
Producer
Production place
Distributor
Preparing metadata: optional
metadata elements
 Related publications
 Related datasets
 Universe
 Unit of analysis
 Time method
 Data collector
 Collector training
 Frequency
 Target sample size
 Major deviations from the sample
design
 Data collection mode
 Types of research instrument
 Characteristics of data collection
situation
 Weighting
 Response rate
 Error notes
 Estimates of sampling error
 Cleaning operations
Preparing metadata: don’t forget
Persistent identifier
Terms of use
Data license
Access conditions (if any)
Data citation and Metadata Example from IFPRI Dataverse
Thank you: Questions and comments(?)

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Getting data into the data repository

  • 1. Getting data into the repository: things to ponder Indira Yerramareddy, Manger of Knowledge Management and Web Nilam Prasai, Senior Data Curator International Food Policy Research Institute (IFPRI) May 16, 2019
  • 2. Research data management Care and maintenance of the data that is produced during the research Describes collection, organization, storage, documentation, dissemination and preservation of research data Defines the quality and after-life of research data Should be considered in each and every steps of research
  • 3. Research data lifecycle  The principles emphasise machine-actionability (i.e., the capacity of computational systems to find, access, interoperate, and reuse data with none or minimal human intervention) because humans increasingly rely on computational support to deal with data as a result of the increase in volume, complexity, and creation speed of data. Fig. Research Data Lifecycle
  • 4. FAIR principles (what) set of guiding principles for scientific data management and stewardship to ensure that data are oFINDABLE (F) oACCESSIBLE (A) oINTEROPERABLE (I) oREUSABLE (R) developed and endorsed by researchers, publishers, funding agencies and others put emphasis on machine-actionability on datasets
  • 5. FAIR principles (why) help to increase the visibility of research help to save time and resources by minimizing duplicate data collection and research help to innovate and discover by providing data needed to answer research questions help to attain maximum potential of any data assets help to achieve maximum impact of research help to improve the reproducibility of research help to follow international standards, protocols and best practices
  • 6. FAIR principles (how) Findable • Metadata • Persistent identifier • Repository Accessible • Machine and human readable metadata and data • Long term storage and preservation Interoperable • Metadata schema • Standard vocabulary and ontology • Interoperable repository Reusable • Data use license • Metadata with accurate and relevant attributes https://www.force11.org/group/fairgroup/fairprinciples
  • 7. Key things to ponder when publishing research data Informed consent Data anonymization Intellectual property, ownership and copyrights Contractual and legal compliance Data files, documentations and metadata
  • 8. Do I have informed consent to share data? Scientists are required to protect the confidentiality of the respondents Language in informed consent can limit scientist’s ability to share data Use language in informed consent: such as “We may share de-identified data we collect from you…” Identified and sensitive datasets can be shared only under restrictive settings
  • 9. Is the data completely deidentified? Should not compromise confidentiality/privacy of respondents Direct and indirect identifiers should not be present in datasets that are openly public Controlled sharing should be done for datasets that can’t be deidentified completely Always use non-disclosure agreement while sharing identified datasets
  • 10. Who owns the data? Intellectual property and copyrights Confirm who has the rights and ownership to the data Confirm what intellectual property and copyrights applies to data Confirm if you plan to apply patent for the dataset, data collection methodology etc
  • 11. Is their any legal and contractual provision related to data publishing? Provisions in the contract oData security, protection, retention, transfer, sharing oConfirm if permission is needed from collaborators for data publishing Legal regulations oData security, protection, retention, transfer, sharing
  • 12. Preparing data for publishing Preparing data files Preparing documentations Preparing metadata
  • 13. Preparing data files File format File name Variable name Data values and codes Special types of data Anonymization
  • 14. Preparing documentation: key elements to consider Context Data collection methods Structure of data Quality controls Versions Access and use conditions
  • 15. Preparing documentation: key documents to include Codebook(s) Data collection instruments Sampling methodology Interviewer manual Summary report Working papers Project reports and publications
  • 16. Preparing metadata: minimum metadata elements Title Authors/Contributors Description Funder Keywords Topics Sample and sampling procedure Data collection date Time period covered in the datasets Geographic coverage Geographic unit Producer Production place Distributor
  • 17. Preparing metadata: optional metadata elements  Related publications  Related datasets  Universe  Unit of analysis  Time method  Data collector  Collector training  Frequency  Target sample size  Major deviations from the sample design  Data collection mode  Types of research instrument  Characteristics of data collection situation  Weighting  Response rate  Error notes  Estimates of sampling error  Cleaning operations
  • 18. Preparing metadata: don’t forget Persistent identifier Terms of use Data license Access conditions (if any)
  • 19. Data citation and Metadata Example from IFPRI Dataverse
  • 20. Thank you: Questions and comments(?)