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ENZYMEs
MNR MEDICAL COLLEGE & HOSPITAL
Dr Anurag Yadav
MBBS, MD
Assistant Professor
Department of Biochemistry
Instagram page –biochem365
YouTube – Dr Biochem365
Email: dranurag.y.m@gmail.com
OBJECTIVE
• What are enzymes?
• Definitions
• Characteristics of enzymes
• Classification of enzymes
What Are Enzymes?
Enzymes are biocatalysts
1/8/2021 5
BIOCHEMICAL NATURE OF ENZYME
• All enzymes are proteins except ribozymes.
• They are distinguished from other proteins by
catalytic action.
• The catalytic power of enzyme is d/u primary,
secondary, tertiary & quaternary structure of
the protein molecule.
• Change can affect enzyme activity.
Chemical Nature of Enzymes
• They are high molecular weight compounds
made up principally of chains of amino acids
linked together by peptide bonds.
• Enzymes can be denatured and precipitated
with salts, solvents and other reagents.
Characteristics
• Catalysts for biological reactions
• Most are proteins
• Lower the activation energy
• Increase the rate of reaction
• Heat labile
• Can be precipitated by protein precipitating
agents
• May contain cofactors such as metal ions or
organic (vitamins)
8
Substrate
• The substance upon which an enzyme acts.
Product
• The enzyme will convert the substrate into
product.
1/8/2021 9
Enzymes
Made of protein Present in
all living cells
Converts substrates
into products
Biological
catalysts
Increase the rate of
chemical reactions
Remain unchanged
by chemical reaction
Characteristics of enzymes
Name of Enzymes
• End in –ase
• Identifies a reacting substance
sucrase – reacts sucrose
lipase - reacts lipid
• Describes function of enzyme
oxidase – catalyzes oxidation
hydrolase – catalyzes hydrolysis
• Common names of digestion enzymes still use
–in
Pepsin, Trypsin
11
Enzyme classification
IUBMB System of Classification
• Described by International Union of
Biochemistry and Molecular Biology (IUBMB)
in 1964
CLASSIFICATION (IUBMB)
1.OXIDOREDUCTASES
2.TRANSFERASES
3.HYDROLASES
4.LYASES
5.ISOMERASES
6.LIGASES
Enzyme Code number
• “EC” Enzyme Code number
• 1st digit - main class.
• 2nd digit – subclass. Type of group involved.
• 3rd digit – sub-sub class
• 4th digit – number given to the enzyme in sub-
sub class
E.g. EC(1.1.1.27)
Creatine kinase
Classification of Enzymes
Class Reactions catalyzed
1. Oxidoreductoases Oxidation-reduction
2. Transferases Transfer group of atoms
3. Hydrolases Hydrolysis-cleave & add water
4. Lyases Cleave without adding water
5. Isomerases Rearrange atoms
6. Ligases Combine molecules using ATP
17
EC-1 OXIDOREDUCTASE
• Enzymes involved in oxidation- reduction reactions.
• Catalyze the electron transfer . Oxygen- oxidases.
Hydrogen- dehydrogenases.
Alcohol Dehydrogenase
Alcohol + NAD+ Aldehyde + NADH + H+
Class 1:
ENZYME SUBSTRATE PRODUCT
Lactate dehydrogenase Lactate Pyruvate
Xanthine oxidase Xanthine Uric acid
L Amino acid oxidase D amino acids Keto acids
Cytochrome oxidase Reduced Cytochrome C Oxidized Cytochrome-C
Alcohol dehydrogenase Alcohol Aldehyde
EC-2 TRANSFERASES
• Catalyze the transfer of functional groups.
(amino, carboxyl, methyl, phosphoryl, etc)
(A-X) +B A+(B-X)
A. METHYL group---e.g. Transmethylase
B. ALDEHYDE or KETONIC group e.g. Transaldolase
or transketolase.
C. ACYL GROUP e.g.Aceyltransferase
D. AMINO-KETO GROUP- Aminotransferase
E. KINASES are specialized transferase that
regulate metabolism by transferring phosphate
from ATP to other molecules e.g.
Hexokinase
ATP +Glucose -----G-6-P+ ADP
EC-3 HYDROLASES
• That bring about hydrolysis of compounds.
Catalyze the cleavage of C-O, C-N, C-C, etc by
adding water
A-B + H20 A-OH + B-H
Glucose-6-phoshate+H20  Glucose + Pi
glucose-6-phosphatase
1. LIPASES---e.g.Phospholipases, Lipoprotein lipase
2. PHOSPHATASES------e.g.Glucose-6-Phosphatase
3. CHOLINE ESTERASE -hydrolysases acetylcholine
4. PEPTIDASES-----hydrolyses peptides
5. NUCLEASE --- e.g.nucleotidase, nucleosidase
6. Which break CARBOHYDRATES e.g. Amylase act
on amylose Lactase, Maltase
7. Enzymes acting on C—N linkage --- Urease,
Asparginase. Glutaminase, Arginase
EC-4 LYASES
• Catalyze the cleavage of C-O, C-C & C-N bonds by
means other than hydrolysis, giving rise to
compound with double bonds.
• A-X LYASE A
│ ║ + X-Y
B-Y B
• Ex- Aldolase, Decarboxylase, Carbonic Anhydrase,
Cysteine Desulfurase, HMG Co-A Lyase
EC-5 ISOMERASES
• Catalyze intramolecular (structural or geometric)
changes in a molecule.
ABC CAB
glucose,6,phosphate Fructose,6,phosphate
Phoshohexose isomerase
Triose Phosphate Isomerase
MUTASE
EC-6 LIGASES (Synthetases)
• Catalyze the joining of two molecules coupled with
the hydrolysis of pyrophosphate bond of ATP.
A + B + ATP AB + ADP +Pi
Glutamate+ NH3 + ATP
Glutamine synthatase
Glutamine +ADP+Pi
GLUTAMINE SYNTHETASE
BIOTIN CARBOXYLASE
ZYMOGEN OR PROENZYME
• Enzymes which are present in inactive form, which
must be cleaved to be activated
• Blood & digestive tract- Enzymes present in
precursor form.
E.g. Chymotrypsinogen.
Prothrombin.
Proelastase
• Their synthesis in proenzyme form prevent them
from catalyzing reactions in the cell where they are
synthesized.
Co-enzymes
• Enzyme may be simple protein or complex protein
containing
protein part (Apo-enzyme)
+ Holoenzyme
non-protein part (Co-enzyme)
• Metallo-enzymes: enzymes which requires metal
ions for their activity. Ex: magnesium for
hexokinase
• Co-factors: Co-enzyme+Metal ion
Features of Co-enzymes
• Essential for the biological activity of the enzyme
• Co-enzyme is a low molecular weight organic
Substance
• It is heat stable.
• Combine loosely with the enzyme molecules
• when the reaction is completed, the co-enzyme is
released from the apo-enzyme, and can bind to
another enzyme molecule
• Most of the co-enzymes are derivatives of vitamin
B complex group of substances
08-01-2021 33
Co-enzymes may be divided into two groups
• Those taking part in reactions catalyzed by
oxidoreductases by donating or accepting
hydrogen atoms or electrons
• Those co-enzymes taking part in reactions
transferring groups other than hydrogen
08-01-2021 34
CLASSIFICATION
For transfer of hydrogen:
NAD+, NADP+, FMN, FAD, Lipoic acid,
Coenzyme Q.
For transfer of group other than hydrogen
Co-A-SH,
Thiamin pyrophosphate,
Pyridoxal phosphate,
Tetrahydro folate,
Biotin,
Methyl cobalamine
Deoxy adenosyl cobalamine
Dietary precursor Coenzymes Group transfer
Thiamin (B1) Thiamine
pyrophosphate
Aldehyde
Nicotinic acid
(Niacin )
Nicotinamide
adenine
dinucleotide
Hydride(H+)
Riboflavin (B2) Flavin adenine
dinucleotide
Electron
Panthothinic acid Coenzyme-A Acyl group
Pyridoxine Pyridoxial phosphate Amino group
Metalloenzymes
Metals enzymes
Fe2+ OR Fe3+ Cytochrome oxidase
Catalase, perxidase
Cu2+ Cytochrome oxidase, SOD
Zn2+ Carbonic anhydrase
Alcoholic dehydrogenase
Mg2+ Hexokinase
Glucose-6-phosphatase
Pyruvate kinase
Mn2+ Arginase
Ribonucleotide reductase
LOCALIZATION OF ENZYMES
• Enzymes are located either
-Intracellularly or
-Extracellularly.
• Enzymes are found in all tissues and fluids of the body.
• Intracellular enzymes catalyze the reactions of
metabolic pathways.
• Plasma membrane enzymes regulate catalysis within
cells in response to extracellular signals
• Enzymes of the circulatory system are responsible for
regulating the clotting of blood
Almost every significant life process is dependent on
enzyme activity.
Site where actual reaction
occurs
Substrate –bound by weak
interaction
Specificity of enzyme
depend on arrangement of
atoms in active site
08-01-2021 41
Specificity of Enzyme Action
Specificity of Enzyme Action
• The ability of an enzyme to discriminate b/w two
competing substrates.
• Significance: specificity makes it possible for a
number of enzymes to co-exit in the cell without
interfering in each other’s actions.
• TYPES: - Absolute specificity
-Group specificity
- Reaction specificity
-Bond specificity
-Stereo specificity
Absolute specificity
Group specificity
• One enzyme can catalyse the same reaction
on a group of structurally similar compounds
• Ex- Hexokinase can catalyse phosphorylation
of glucose, galactose and mannose
• Lipase cleaves Various groups of Lipids
Reaction specificity
Almost only one enzyme catalyzes a given specific reaction
• Most of the proteolytic enzymes are showing
group (bond) specificity
• Ex- proteolytic enzymes
Exopeptidases Endopeptidases
-hydrolyzing terminal -centrally located
peptide bond peptide bond
-carboxypeptidase -pepsin, trypsin,
-aminopeptidase - chymotrypsin
Bond specificity
Stereo specificity
• Many enzymes show specificity towards
stereoisomers.
• They act on only one type of isomer
E.g: L-lactate dehydrogenase will act only on
L- lactic acid and not D- lactic acid
How do enzymes Work?
Enzymes work by Lowering of
Activation Energy
1/8/2021 49
 Enzymes accelerate reaction rate by
providing transition states with low
activational energy for formation of
products
 Hence reaction rate is enhanced by many
folds in the presence of enzymes
 The total energy of the system remains
the same and equilibrium state is not
disturbed
• Theories to explain enzyme substrate
interaction
• Michaelis-Menten Theory
• Fischers Template Theory
• Koshland’s Induce Fit Theory
MICHAELIS–MENTEN THEORY
• In 1913 put forward the Enzyme–Substrate
complex theory
• The enzyme (E) combines with the substrate (S),
to form an enzyme-substrate (ES) complex,
which immediately breaks down to the enzyme
and the product (P)
• E + S → E–S Complex → E + P
Ex - Phosphatase
• Glucose-6-P → Glucose + Pi
• The active center of this enzyme contains a serine
residue
a. E-Serine-OH+Glucose-6-P→E-Serine-O-P+Glucose
b. E-Serine-O-P → E-Serine-OH+Pi
FISCHER'S TEMPLATE THEORY
Lock and Key Model
• It states that the three dimensional structure
of the active site of the enzyme is
complementary to the substrate
• Enzyme and substrate fit each other
KOSHLAND'S INDUCED FIT THEORY
• The substrate induces conformational changes
in the enzyme, such that precise orientation of
catalytic groups is effected
• Allosteric regulation can also be explained by
the hypothesis of Koshland
ENZYME KINETICS
• Enzyme kinetics is the study of the chemical
reactions that are catlysed by enzymes.
• In enzyme kinetics, the reaction rate is
measured and the effects of various conditions
of the reaction are investigated
• Velocity or rate of enzyme reaction is assessed
by the rate of change of substrate to product
per unit time
• The velocity is proportional to the conc. of
reacting molecules.
A + B -------------------------→ C + D
V α [A] [B]
FACTORS AFFECTING
ENZYME ACTIVITY
1. Enzyme concentration
2. Substrate concentration
3. Product concentration
4. Temperature
5. Hydrogen ion concentration (pH)
6. Presence of activators
7. Presence of inhibitors
8. Presence of repressor or derepressor
9. Covalent modification
1. Enzyme Concentration
i. Rate of a reaction or velocity (V) is directly
proportional to the enzyme concentration
3. Effect of Concentration of Products
• when product concentration is increased, the
reaction is slowed, stopped or even reversed
E1 E2 E3
A -------→ B ----------→ C -------||------→ D
4. Effect of Temperature
• The temperature coefficient (Q10) is the
factor by which the rate of catalysis is
increased by a rise in 10°C.
• The rate of reaction of most enzymes will
double by a rise in 10°C.
5. Effect of pH
• Enzymes have the optimum pH between 6 and
8.
Exceptions are
• pepsin (with optimum pH 1-2);
• alkaline phosphatase (optimum pH 9-10) and
• acid phosphatase (4-5).
2. Effect of Substrate Concentration
• As substrate concentration is increased, the
velocity is also correspondingly increased in the
initial phases; but the curve flattens afterwards
• The maximum velocity obtained is called Vmax
Substrate Saturation of an Enzyme
A. Low [S] B. 50% [S] or Km C. High, saturating [S]
Michaelis Constant (Km)
• Michaelis theory, the formation of enzyme–
substrate complex is a reversible reaction, while
the breakdown of the complex to enzyme +
product is irreversible
• The Michaelis-Menten equation
• It is relationship between initial reaction velocity
vi and substrate concentration [S]
• Km is Michaelis-Menten constant
• When Vo = ½ Vmax
Km = [S]
Km value is substrate concentration at half-
maximal velocity
Salient Features of Km
1. Km value is substrate concentration (expressed
in moles/L) at half-maximal velocity
2. Km is independent of enzyme concentration
3. It is the Signature of the enzyme
4. It denotes the affinity of the enzyme towards the
substrate
 Low Km - high Affinity for substrate
 High Km –low affinity for substrate
• Useful to compare Km for different substrates
for one enzyme
Hexokinase : D-fructose – 1.5 mM
D-glucose – 0.15 mM
• Useful to compare Km for a common substrate
used by several enzymes
Hexokinase: D-glucose – 0.05 mM
Glucokinase: D-glucose – 10 mM
Uses of Km
• Experimentally, Km is a useful parameter for
characterizing the number and/or types of
substrates that a particular enzyme will utilize
• It is the Km of the rate-limiting enzyme in many
of the biochemical metabolic pathways that
determines the amount of product and overall
regulation of a given pathway
Limitations of Michaelis-Menten equation
• Low [S] have to be used to plot the initial
segment where Vo cannot be measure precisely
• Very high [S] required to to draw a the final
platue
• When the points observed for velocity are too
scattered the hyperbolic graph cannot be drawn
precisely
• It is difficult to extrapolate the hyperbolic graph
if required
• The plot provides a useful graphical method for
analysis of the Michaelis-Menten equation:
• Taking the reciprocal gives
V is the reaction velocity (the reaction rate)
Km is the Michaelis–Menten constant
Vmax is the maximum reaction velocity
[S] is the substrate concentration
80
Lineweaver–Burk Plot or Double Reciprocal
Plot
ENZYME INHIBITION
 Enzyme inhibitors -are molecular agents that
interfere with catalysis; slowing or halting
enzymatic reactions.
 There are two broad classes of enzyme
inhibitors:
reversible and
irreversible
Enzyme
inhibition
reversible
competitive
noncompetitive
irreversible
Reversible Inhibition-
• Reversible Inhibition –activity of enzyme is fully
restored when inhibitor physically removed from
system.
COMPETITIVE INHIBITOR:
competes with the substrate for the active site of an enzyme.
Examples:
• Sulphonamide (PABA) – pteroid synthetase
• Dicoumarol -- Vitamin k epoxide reductase
• Lovastatin -- HMG Co reductase
• Allopurinol – Xanthine oxidase
• Methotrexate – Dihydrofolate reductase
NONCOMPETITIVE INHIBITION
• Binding of the inhibitor does not affect binding of
substrate.
• No competition between substrate & inhibitor.
• Formation of both EI and EIS complexes is therefore
possible.
Examples
• Trypsin inhibitors in Soyabean & raw egg
• Parasite Ascaris contains pepsine & trypsine
inhibitors
IRREVERSIBLE INHIBITION
• The irreversible inhibitors -
- Bind covalently with or destroy a functional group on
an enzyme that is essential for the enzyme’s activity,
Examples
• Cyanide inhibits cytochrome oxidase.
• Fluoride will inhibit the enzyme, enolase, and consequently the
glycolysis.
• Iodoacetate inhibits enzymes having-SH group in their active
centers.
• BAL (British Anti Lewisite; dimercaprol) is used as an antidote for
heavy metal poisoning. The heavy metals act as enzyme poisons
by reacting with the SH group. BAL has several SH groups with
which the heavy metal ions can react and thereby their
poisonous effects are reduced
Effect of inhibitors…
Type of inhibitor Km Vmax
Irreversible No effect Decreased
Reversible
competitive
Increased No effect
Reversible
noncompetitive
No effect Decreased
Reversible
uncompetitive
Decreased Decreased
• Increasing the substrate concentration will
abolish the competitive inhibition, but will not
abolish noncompetitive inhibition
Suicide inhibition
• It is a special type of irreversible inhibition of
enzyme activity. It is also known as mechanism based
inactivation.
• The inhibitor makes use of the enzyme's own
reaction mechanism to inactivate it (mechanism
based inactivation).
• the structural analog is converted to a more
effective inhibitor with the help of the enzyme to be
inhibited.
• This new product irreversibly binds to the enzyme
and inhibits further reactions
Examples:
• DFMO (difluromethylornithine) in treatment
of trypanosomia.
• Allopurinol in gout
• Aspirin as anti-inflammatory.
Therapeutic
applications
Enzyme
inhibition
of
Competitive inhibition
Therapeutic agent Enzyme inhibited Clinical use
Acetazolamide Carbonic anhydrase Diuretic
Methotrexate Folate reductase Anti cancer
Captopril Angiotensin converting
enzyme
Hypertension
Statins HMG CoA reductase Hypercholesterolemia
Allopurinol Xanthine oxidase Gout
Dicoumarol Vit K epoxide reductase Anti coagulant
Sulphonamide Pteroid synthetase Antibiotic
Acyclovir DNAP of virus antiviral
Competetive inhibitors
Azaserine Phosphoribosyl
amidotransferace
Anti cancer
Cytosine arabinoside DNA polymerase Anti cancer
Neostigmine Ach esterase Myasthenia gravis
Osteltamivir Neuraminidase Influenza
Penicillin Transpeptidase Anti bacterial
Isonicotinic acid hydrazide Anti tubercular
Irreversible Inhibitors
Therapeutic agent Enzyme inhibited Clinical use
Cyanide Cytochrome oxidase
Fluoride Enolase Glycolysis inhibition
BAL (dimercaprol) Thiol group enzymes Heavy metal poisoning
Iodoacetate SH group containing enzymes Heavy metal poisoning
Suicide inhbition
Allopurinol Xanthine oxidase Gout
MAO inhibitors
(deprenyl)
Mono amine oxidase Mood stabilizers,
antidepressant .
Enzyme regulation
• The facility to increase or reduce the rate of an enzyme
catalysed reaction is a crucial part of metabolic control
and therefore the adaptability of metabolism as this
allows optimal utilization of possibly scarce resources.
• In short, a cell must be able to control its metabolic
activities in order to meet a challenge from the
environment.
Enzyme regulation …
• Rate limiting step of a metabolic pathway is
that reaction which determines the rate and
direction of the entire pathway
Criteria for rate limiting enzyme
• Regulated enzyme its activity and /or synthesis should be
regulated in vivo
• Rate limiting step is catalysed practically unidirectionally
or irreversible by the enzyme in vivo
• Determines the direction of the entire pathway
• Usually the initial step of a pathway so that the
intermediates of earlier steps would not accumulate in
case of feed back inhibition or repression of the rate
limiting enzyme.
Pathways Rate limiting enzymes
Adipose tissue lipolysis Hs triacylglycerol lipase
Cholesterol synthesis HMG CoA reductase
TCA cycle alpha KG dehydrogenase
Fatty acid synthesis Acetyl CoA carboxylase
Gluconeogenesis Fructose 1,6 bisphosphatase , PEP
caboxylase
Glycogenolysis Glycogen phosphorylase
Glycogenesis Glycogen synthase
Urea synthesis Carbamoyl phosphate synthase
Pentose phosphate pathway Glucose 6 phosphate dehydrogenase
Purine biosynthesis PP ribosyl -P glutamyl amidotransferase
Enzyme regulation
Short term
Covalent
Non covalent
/ allosteric
modification
Long term
Hormonal
Gene
regulation
Enzyme regulation types
Allosteric regulation
Covalent modification
Feedback inhibition/regulation
Induction
Repression
Compartmentalization
Covalent modification
• Irreversible covalent modification
• Activation of inactive proenzymes or zymogens by
the action of partial Proteolysis (hydrolysis).
• Ex: trypsinogen, chymotrypsinogen, pepsinogen,
proinsulin, clotting factors, procollagen
Covalent modification
• Reversible covalent modification
• This is by the process of phosphorylation of
proteins on seryl, threonyl, or tyrosyl residues,
catalyzed by protein kinases, is
thermodynamically spontaneous.
• Equally spontaneous is the hydrolytic removal
of these phosphoryl groups by enzymes called
protein phosphatases.
Feedback regulation
• Feedback regulation, a phenomenologic term
devoid of mechanistic implications
• Ex: Dietary cholesterol decreases hepatic
synthesis of cholesterol
– Regulation in response to dietary cholesterol involves
curtailment by cholesterol or a cholesterol metabolite of the
expression of the gene that encodes HMG-CoA reductase
(enzyme repression)
Allosteric Enzymes
• An important group of
enzymes that do not obey
Michaelis- Menten kinetics
comprises the allosteric
enzymes.
• These enzymes consist of
multiple subunits and
multiple active sites.
• The activity of an allosteric enzyme may be altered
by regulatory molecules that are reversibly bound to
specific sites other than the catalytic sites.
• The catalytic properties of allosteric enzymes can
thus be adjusted to meet the immediate needs of a
cell.
• Allosteric enzymes are key regulators of metabolic
pathways in the cell.
Allosteric modulation
• The binding of substrate to one active site can
affect the properties of other active sites in
the same enzyme molecule.
• A possible outcome of this interaction
between subunits is that the binding of
substrate becomes cooperative : positive
allosteric effect
Allosteric modulation
• Negative cooperativity,
– in which the binding of substrate to one active site
decreases the affinity of other sites for substrate
• Negative allosteric modulation (also known
as allosteric inhibition) For example, when 2,3-
BPG binds to an allosteric site on hemoglobin,
the affinity for oxygen of all subunits
decreases
Allosteric modulators
Enzymes Activators Inhibitors
Acetyl CoA caboxylase Citrate Palmitoyl CoA
Aspartate
transcarbamoylase
ATP CTP
Carbamoyl phosphate
synthase (mitochondria)
N acetyl glutamate
(cytoplasm) PP ribose P, ATP UMP, UDP, UTP, CTP
Fructose 1,6 bisphosphate Fructose 2,6 bisphosphate
Glycogen synthase Glucose 6 phosphate
Phosphofructokinase 1 Fructose 2, 6 bisphosphate ATP
Pyruvate carboxylase Acetyl CoA
Compartmentalization
• Pathways in eukaryotic cells are often
compartmentalized within cytoplasmic organelles by
intracellular membranes.
• Thus we find particular pathways associated with
the mitochondria, the lysosomes, the peroxisomes,
the endoplasmic reticulum
Compartmentalization
• Enzymes that degrade proteins and
polysaccharides reside inside lysosomes
• Fatty acid biosynthesis occurs in the cytosol,
whereas fatty acid oxidation takes place within
mitochondria
Induction
• Induction is effected through the process of derepression.
• The inducer will relieve the repression on the operator site
and will remove the block on the biosynthesis of the enzyme
molecules.
• Tryptophan pyrrolase and transaminases are induced by
glucocorticoids.
• Glucokinase is induced by insulin.
• ALA synthase is induced by barbiturates.
Repression
• repressor acts at the gene level.
• Whereas inhibition at enzyme level.
• key enzyme of heme synthesis, ALA synthase is autoregulated
by heme by means of repression
DIAGNOSTIC
ENZYMOLOGY
ENZYMES OF DIAGNOSTIC IMPORTANCE
ENZYMES TISSUE ORIGIN CLINICAL SIGNIFICANCE
1. Acid phosphatase Prostate, RBC Ca prostate
2. ALT Liver ,Muscle , heart liver disease
3. ALP Brain, Liver Bone & Hepatobiliary D
4. Amylase Pancreas Pancreatic disease
5. AST Heart, Liver MI, Hepatitis
6. Aldolase Skeletal muscle Muscular dystrophy
7. Cholinesterase Liver OP poisoning
8. Creatine kinase SM, Heart MI, Muscular dystrophy
9. GGT Hepatobiliary sys Hepatobiliary D, Alcohol
10. LDH Heart, Liver ,SM, RBC MI, Hemolysis
11. 5’-NTS Hepatobiliary tract Hepatobiliary disease
12. Prostate specific Ag Prostate Ca prostate
13. Lipase Pancreas Pancreatitis
14. Trypsin Pancreas Cystic fibrosis
ENZYME PATTERNS IN DISEASES
Hepatic disease –
ALT , AST, NTP, ALP, GGT
Pancreatic diseases-
Amylase, lipase, Trypsin, &
Chymotrypsin
Myocardial infarction -
CK-MB, AST, LDH
CARDIAC MARKERS
SL NO ENZYMES START
APPEARS
PEAK
LEVEL
RETURNS
NORMAL
1 Myoglobin 1 hr 6-12 hr 24 hr
2 Troponin- I 4-6 hr 14-24 hr 3-5 days
3 Troponin-T 6hrs 72hrs 7-14 days
3 CK-MB 3-6 hr 12-24 hr 2-3 days
4 AST/SGOT 6-12 hr 24-48 hr 4-5 days
5 LDH 2 8-16 hr 48-72 hr 7-12 days
CARDIAC MARKERS
- MB
FEATURES OF LD SIOENZYMES
ISOENZYME EP
MOBILITY
TISSUE OF
ORIGIN
%AGE IN
SERUM
LD-1 Fastest Heart, RBC,
kidney
30%
LD-2 Faster Heart, RBC
kidney
35%
LD-3 Fast Brain 20%
LD-4 Slow Liver 10%
LD-5 Slowest Skeletal
muscle
5%
ENZYME PATTERNS IN DISEASES
Hepatic disease –
ALT , AST, NTP, ALP, GGT
Pancreatic diseases-
Amylase, lipase, Trypsin, &
Chymotrypsin
Myocardial infarction -
CK-MB, AST, LDH
Hepatic disease
TRANSAMINASES
Normal ranges:
• ALT/SGPT – 10-40 IU/L
• AST/SGOT - 10-30 U/L
AST
• Increased in parenchymal liver diseases
• Hepatitis, malignancies
• AST increased in MI
• ALT
• High increase (300-1000) – Toxic Hepatitis, Viral
Hepatitis
• Moderate increase (50-100) – Chronic liver
disease, Cirrhosis, Hepatitis
• In carcinoma of liver 5-10 fold increase (AST &
ALT) AST higher than ALT
1/8/2021 143
ENZYMES IN BILIARY
TRACT DISEASES
• 5’-NTD
• GGT
• ALP
ALKALINE PHOSPHATASE
 Ecto enzyme - Cell membrane
 Metaloenzyme –Zinc
 Optimum PH – 9- 10
 Present in Intestinal epithelial cells,bone
osteoblasts, liver, kidney, placenta
 Normal range – 40-125 U/L
Elevated
 Children's – 2.5 times
 Pregnancy
CLINICAL SIGNIFICANCE
 Moderate increase (2-3 Times)
 Alcoholic hepatitis
 Infective hepatitis
 High increase (10-12 Times)
 Obstructive jaundice - Gall Stone
- Ca head pancreas
Very High Levels (10-25 Times)
-bone cancer
- Paget's disease
- Rickets
- Healing bone #
5’-Nucleotidase/Nucleotide
phosphatase
• Ribonucleotide phosphohydralase
• Ecto-enzyme – present on cell membrane
• Marker enzyme for PM
• Optimum PH – 6.6 – 7
• Normal level – 2-10 U/L
CLINICAL SIGNIFICANCE OF NTP
Moderate elevation – Hepatitis
Highly Elevated – Biliary obstruction
g-Glutamyl transferase GGT
FUNCTIONS
- Transfer of AA’s from one peptide to
another peptide
- Synthesis of glutathione
- Transport of aa across the cell
membrane
• Location:
-Liver, Kidney, Placenta
• Normal range : 10-30 U/L
CLINICAL SIGNIFICANCE
• More sensitive than ALP, NTP & AST, ALT
• Moderate increase – infective hepatitis
• Increased in Alcoholics – proportional to
Alcohol intake
• Liver carcinoma increased earlier than other
enzymes
CARDIAC MARKERS
• CK
• AST/SGOT
• LDH
• CK-MB
• CTn = TnI & TnT
OLD CM
NEW CM
CARDIAC MARKERS
SL NO ENZYMES START
APPEARS
PEAK
LEVEL
RETURNS
NORMAL
1 Myoglobin 1 hr 6-12 hr 24 hr
2 Troponin- I 4-6 hr 14-24 hr 3-5 days
3 Troponin-T 6hrs 72hrs 7-14 days
3 CK-MB 3-6 hr 12-24 hr 2-3 days
4 AST/SGOT 6-12 hr 24-48 hr 4-5 days
5 LDH 2 8-16 hr 48-72 hr 7-12 days
CARDIAC MARKERS
- MB
CREATINE KINASE
Creatine CK Creatine phosphate
ATP ADP
• N Males -15-100U/L
• Females – 10-80U/L
• CK-MM – 80%
• CK-MB – 5%
• CK-BB – 1%
Clinical Significance
• CK-MB increased in MI
• CK-MM increased Mascular Dystrophies,
Crush Injuries
• CK-BB increased in Cerebrovascular accidents
LACTATE DEHYDROGENASE
PYRUVATE LDH LACTATE
• N- 100-200IU/L
• LDH levels are 100 times more inside the RBC
than in the Plasma
–Hemolysis – false +ve reasults
CLINICAL SIGNIFICANCE
• Increased in hemolytic anemia, hepatocellular
damage, mascular dystrophy, carcinomas,
leukemias , MI
• ISOENZYMES
ISOENZYME SUBUNITS TISSUE OF ORIGIN % IN SERUM
LDH-1 H4 HEART 30%
LDH-2 H3M1 RBC 35%
LDH-3 H2M2 BRAIN 20%
LDH-4 H1M3 LIVER 10%
LDH-5 M4 SKELETAL MUSCLE 5%
LDH FLIPPED PATERN IN MI
NORMAL
MI
CARDIAC SPECIFIC TROPONINS
• Contractile proteins of all myofibrils
Troponin-I
• N- 1-10 microgm/L
• Not increased in muscle injury
Troponin-T
• N- <50ngm/L
PANCREATIC ENZYMES
• Amylase
• Lipase
• PROENZYMES
– Trypsinogen
- Chymotrypsinogen
AMYLASE
Amylase splits starch to dextrins,
maltose
Types – Salivary & Pancreatic
Normal range :
Serum - 50-120 U/L
urine - < 375 U/L
M W = 55,000
Optimum PH = 6.9 – 7
Calcium activates the enzyme
CLINICAL SIGNIFICANCE
Acute pancreatitis:
• 1000 times increase
• Rise within 2-12 hr
Peak – 12-72 hr
Normal – 3-4 days
• Moderate increase – chronic pancreatitis, mumps,
obstruction of pancreatic duct
• Urinary amylase increased in acute pancreatitis
increased on 1st day & remains increased for 7-10
LIPASE
• Hydrolyse Triglycerides
• Requires Colipase, bile salts
• N- 10-60U/L
• Location :
- Pancreas
• Increased in acute pancreatitis
• Increases within 4-8hrs, peaks 24hrs,
persists for 7-14 days
THERAPEUTIC ENZYMES
SL NO ENZYMES APPLICATION
1 Asperginase ALL
2 Streptokinase Lyse clot on MI
3 Pepsin & trypsin Used in GI disorders
4 Fibrinolysin Used on wounds
5 α1-antitrypsin Emphysema
6 Collagenase Debridement of dermal ulcers/burns
ENZYMES OF DIAGNOSTIC IMPORTANCE
ENZYMES TISSUE ORIGIN CLINICAL SIGNIFICANCE
1. Acid phosphatase Prostate, RBC Ca prostate
2. ALT Liver ,Muscle , heart liver disease
3. ALP Brain, Liver Bone & Hepatobiliary D
4. Amylase Pancreas Pancreatic disease
5. AST Heart, Liver MI, Hepatitis
6. Aldolase Skeletal muscle Muscular dystrophy
7. Cholinesterase Liver OP poisoning
8. Creatine kinase SM, Heart MI, Muscular dystrophy
9. GGT Hepatobiliary sys Hepatobiliary D, Alcohol
10. LDH Heart, Liver ,SM, RBC MI, Hemolysis
11. 5’-NTS Hepatobiliary tract Hepatobiliary disease
12. Prostate specific Ag Prostate Ca prostate
13. Lipase Pancreas Pancreatitis
14. Trypsin Pancreas Cystic fibrosis
ISOENZYMES
1/8/2021 168
DEFINITION
• Physically distinct forms of the same enzyme
catalyzing same chemical reaction but differ in
their physical & chemical properties.
DIAGNOSTICALLY IMPORTANT ISOENZYMES
 Creatine phosphokinase (CK/ CPK)
 Lactate dehydrogenase (LDH)
 Alkaline phosphatase (ALP)
CREATINE PHOSPHOKINASE
Cytosolic enzyme
Dimeric – M chain & B chain
 CK-1 = BB = Brain
CK-2 = MB =Cardiac
CK-3 = MM =Muscle
ISOENZYME EP MOBILITY TISSUE OF
ORIGIN
MEAN %AGE
IN BLOOD
CK – 3
=MM
LEAST SKELETAL
MUSCLE
94%
CK – 2
=MB
INTERMEDI
ATE
HEART 5%
CK – 1
=BB
MAXIMUM BRAIN 1%
CHARECTERISTICS OF CK ISOENZYMES
LACTATE DEHYDROGENASE (LDH)
LD levels in tissues 500 times greater than
serum
levels (cytosolic)
Liver - 145 U/gm
Heart - 124 U/gm
Kidney - 106 U/gm
Skeletal muscle - 147 U/gm
RBC - 36 U/gm of Hb
MW 134 Kda
 4 polypeptide chains of 2 types – M chain &
H chain
5 isoenzymes
LD-1 : HHHH (H4)
LD-2 : HHHM (H3M1)
LD-3 : HHMM (H2M2)
LD-4 : HMMM (H1M3)
LD-5 : MMMM (M4)
Enzymes & isoenzymes by Dr. Anurag Yadav

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Enzymes & isoenzymes by Dr. Anurag Yadav

  • 1. ENZYMEs MNR MEDICAL COLLEGE & HOSPITAL Dr Anurag Yadav MBBS, MD Assistant Professor Department of Biochemistry Instagram page –biochem365 YouTube – Dr Biochem365 Email: dranurag.y.m@gmail.com
  • 2. OBJECTIVE • What are enzymes? • Definitions • Characteristics of enzymes • Classification of enzymes
  • 3. What Are Enzymes? Enzymes are biocatalysts 1/8/2021 5
  • 4. BIOCHEMICAL NATURE OF ENZYME • All enzymes are proteins except ribozymes. • They are distinguished from other proteins by catalytic action. • The catalytic power of enzyme is d/u primary, secondary, tertiary & quaternary structure of the protein molecule. • Change can affect enzyme activity.
  • 5. Chemical Nature of Enzymes • They are high molecular weight compounds made up principally of chains of amino acids linked together by peptide bonds. • Enzymes can be denatured and precipitated with salts, solvents and other reagents.
  • 6. Characteristics • Catalysts for biological reactions • Most are proteins • Lower the activation energy • Increase the rate of reaction • Heat labile • Can be precipitated by protein precipitating agents • May contain cofactors such as metal ions or organic (vitamins) 8
  • 7. Substrate • The substance upon which an enzyme acts. Product • The enzyme will convert the substrate into product. 1/8/2021 9
  • 8. Enzymes Made of protein Present in all living cells Converts substrates into products Biological catalysts Increase the rate of chemical reactions Remain unchanged by chemical reaction Characteristics of enzymes
  • 9. Name of Enzymes • End in –ase • Identifies a reacting substance sucrase – reacts sucrose lipase - reacts lipid • Describes function of enzyme oxidase – catalyzes oxidation hydrolase – catalyzes hydrolysis • Common names of digestion enzymes still use –in Pepsin, Trypsin 11
  • 10. Enzyme classification IUBMB System of Classification • Described by International Union of Biochemistry and Molecular Biology (IUBMB) in 1964
  • 12. Enzyme Code number • “EC” Enzyme Code number • 1st digit - main class. • 2nd digit – subclass. Type of group involved. • 3rd digit – sub-sub class • 4th digit – number given to the enzyme in sub- sub class E.g. EC(1.1.1.27)
  • 14.
  • 15. Classification of Enzymes Class Reactions catalyzed 1. Oxidoreductoases Oxidation-reduction 2. Transferases Transfer group of atoms 3. Hydrolases Hydrolysis-cleave & add water 4. Lyases Cleave without adding water 5. Isomerases Rearrange atoms 6. Ligases Combine molecules using ATP 17
  • 16. EC-1 OXIDOREDUCTASE • Enzymes involved in oxidation- reduction reactions. • Catalyze the electron transfer . Oxygen- oxidases. Hydrogen- dehydrogenases. Alcohol Dehydrogenase Alcohol + NAD+ Aldehyde + NADH + H+
  • 17. Class 1: ENZYME SUBSTRATE PRODUCT Lactate dehydrogenase Lactate Pyruvate Xanthine oxidase Xanthine Uric acid L Amino acid oxidase D amino acids Keto acids Cytochrome oxidase Reduced Cytochrome C Oxidized Cytochrome-C Alcohol dehydrogenase Alcohol Aldehyde
  • 18. EC-2 TRANSFERASES • Catalyze the transfer of functional groups. (amino, carboxyl, methyl, phosphoryl, etc) (A-X) +B A+(B-X)
  • 19. A. METHYL group---e.g. Transmethylase B. ALDEHYDE or KETONIC group e.g. Transaldolase or transketolase. C. ACYL GROUP e.g.Aceyltransferase D. AMINO-KETO GROUP- Aminotransferase E. KINASES are specialized transferase that regulate metabolism by transferring phosphate from ATP to other molecules e.g. Hexokinase ATP +Glucose -----G-6-P+ ADP
  • 20. EC-3 HYDROLASES • That bring about hydrolysis of compounds. Catalyze the cleavage of C-O, C-N, C-C, etc by adding water A-B + H20 A-OH + B-H Glucose-6-phoshate+H20  Glucose + Pi glucose-6-phosphatase
  • 21. 1. LIPASES---e.g.Phospholipases, Lipoprotein lipase 2. PHOSPHATASES------e.g.Glucose-6-Phosphatase 3. CHOLINE ESTERASE -hydrolysases acetylcholine 4. PEPTIDASES-----hydrolyses peptides 5. NUCLEASE --- e.g.nucleotidase, nucleosidase 6. Which break CARBOHYDRATES e.g. Amylase act on amylose Lactase, Maltase 7. Enzymes acting on C—N linkage --- Urease, Asparginase. Glutaminase, Arginase
  • 22. EC-4 LYASES • Catalyze the cleavage of C-O, C-C & C-N bonds by means other than hydrolysis, giving rise to compound with double bonds. • A-X LYASE A │ ║ + X-Y B-Y B • Ex- Aldolase, Decarboxylase, Carbonic Anhydrase, Cysteine Desulfurase, HMG Co-A Lyase
  • 23. EC-5 ISOMERASES • Catalyze intramolecular (structural or geometric) changes in a molecule. ABC CAB glucose,6,phosphate Fructose,6,phosphate Phoshohexose isomerase
  • 26. EC-6 LIGASES (Synthetases) • Catalyze the joining of two molecules coupled with the hydrolysis of pyrophosphate bond of ATP. A + B + ATP AB + ADP +Pi Glutamate+ NH3 + ATP Glutamine synthatase Glutamine +ADP+Pi
  • 29. ZYMOGEN OR PROENZYME • Enzymes which are present in inactive form, which must be cleaved to be activated • Blood & digestive tract- Enzymes present in precursor form. E.g. Chymotrypsinogen. Prothrombin. Proelastase • Their synthesis in proenzyme form prevent them from catalyzing reactions in the cell where they are synthesized.
  • 30. Co-enzymes • Enzyme may be simple protein or complex protein containing protein part (Apo-enzyme) + Holoenzyme non-protein part (Co-enzyme) • Metallo-enzymes: enzymes which requires metal ions for their activity. Ex: magnesium for hexokinase • Co-factors: Co-enzyme+Metal ion
  • 31. Features of Co-enzymes • Essential for the biological activity of the enzyme • Co-enzyme is a low molecular weight organic Substance • It is heat stable. • Combine loosely with the enzyme molecules • when the reaction is completed, the co-enzyme is released from the apo-enzyme, and can bind to another enzyme molecule • Most of the co-enzymes are derivatives of vitamin B complex group of substances 08-01-2021 33
  • 32. Co-enzymes may be divided into two groups • Those taking part in reactions catalyzed by oxidoreductases by donating or accepting hydrogen atoms or electrons • Those co-enzymes taking part in reactions transferring groups other than hydrogen 08-01-2021 34
  • 33. CLASSIFICATION For transfer of hydrogen: NAD+, NADP+, FMN, FAD, Lipoic acid, Coenzyme Q. For transfer of group other than hydrogen Co-A-SH, Thiamin pyrophosphate, Pyridoxal phosphate, Tetrahydro folate, Biotin, Methyl cobalamine Deoxy adenosyl cobalamine
  • 34. Dietary precursor Coenzymes Group transfer Thiamin (B1) Thiamine pyrophosphate Aldehyde Nicotinic acid (Niacin ) Nicotinamide adenine dinucleotide Hydride(H+) Riboflavin (B2) Flavin adenine dinucleotide Electron Panthothinic acid Coenzyme-A Acyl group Pyridoxine Pyridoxial phosphate Amino group
  • 35. Metalloenzymes Metals enzymes Fe2+ OR Fe3+ Cytochrome oxidase Catalase, perxidase Cu2+ Cytochrome oxidase, SOD Zn2+ Carbonic anhydrase Alcoholic dehydrogenase Mg2+ Hexokinase Glucose-6-phosphatase Pyruvate kinase Mn2+ Arginase Ribonucleotide reductase
  • 36. LOCALIZATION OF ENZYMES • Enzymes are located either -Intracellularly or -Extracellularly. • Enzymes are found in all tissues and fluids of the body. • Intracellular enzymes catalyze the reactions of metabolic pathways. • Plasma membrane enzymes regulate catalysis within cells in response to extracellular signals • Enzymes of the circulatory system are responsible for regulating the clotting of blood Almost every significant life process is dependent on enzyme activity.
  • 37. Site where actual reaction occurs Substrate –bound by weak interaction Specificity of enzyme depend on arrangement of atoms in active site
  • 38.
  • 40. Specificity of Enzyme Action • The ability of an enzyme to discriminate b/w two competing substrates. • Significance: specificity makes it possible for a number of enzymes to co-exit in the cell without interfering in each other’s actions. • TYPES: - Absolute specificity -Group specificity - Reaction specificity -Bond specificity -Stereo specificity
  • 42. Group specificity • One enzyme can catalyse the same reaction on a group of structurally similar compounds • Ex- Hexokinase can catalyse phosphorylation of glucose, galactose and mannose • Lipase cleaves Various groups of Lipids
  • 43. Reaction specificity Almost only one enzyme catalyzes a given specific reaction
  • 44. • Most of the proteolytic enzymes are showing group (bond) specificity • Ex- proteolytic enzymes Exopeptidases Endopeptidases -hydrolyzing terminal -centrally located peptide bond peptide bond -carboxypeptidase -pepsin, trypsin, -aminopeptidase - chymotrypsin Bond specificity
  • 45. Stereo specificity • Many enzymes show specificity towards stereoisomers. • They act on only one type of isomer E.g: L-lactate dehydrogenase will act only on L- lactic acid and not D- lactic acid
  • 46.
  • 47. How do enzymes Work? Enzymes work by Lowering of Activation Energy 1/8/2021 49
  • 48.
  • 49.
  • 50.  Enzymes accelerate reaction rate by providing transition states with low activational energy for formation of products  Hence reaction rate is enhanced by many folds in the presence of enzymes  The total energy of the system remains the same and equilibrium state is not disturbed
  • 51.
  • 52. • Theories to explain enzyme substrate interaction • Michaelis-Menten Theory • Fischers Template Theory • Koshland’s Induce Fit Theory
  • 53. MICHAELIS–MENTEN THEORY • In 1913 put forward the Enzyme–Substrate complex theory • The enzyme (E) combines with the substrate (S), to form an enzyme-substrate (ES) complex, which immediately breaks down to the enzyme and the product (P) • E + S → E–S Complex → E + P
  • 54. Ex - Phosphatase • Glucose-6-P → Glucose + Pi • The active center of this enzyme contains a serine residue a. E-Serine-OH+Glucose-6-P→E-Serine-O-P+Glucose b. E-Serine-O-P → E-Serine-OH+Pi
  • 55. FISCHER'S TEMPLATE THEORY Lock and Key Model • It states that the three dimensional structure of the active site of the enzyme is complementary to the substrate • Enzyme and substrate fit each other
  • 56. KOSHLAND'S INDUCED FIT THEORY • The substrate induces conformational changes in the enzyme, such that precise orientation of catalytic groups is effected • Allosteric regulation can also be explained by the hypothesis of Koshland
  • 57. ENZYME KINETICS • Enzyme kinetics is the study of the chemical reactions that are catlysed by enzymes. • In enzyme kinetics, the reaction rate is measured and the effects of various conditions of the reaction are investigated
  • 58. • Velocity or rate of enzyme reaction is assessed by the rate of change of substrate to product per unit time • The velocity is proportional to the conc. of reacting molecules. A + B -------------------------→ C + D V α [A] [B]
  • 59. FACTORS AFFECTING ENZYME ACTIVITY 1. Enzyme concentration 2. Substrate concentration 3. Product concentration 4. Temperature 5. Hydrogen ion concentration (pH) 6. Presence of activators 7. Presence of inhibitors 8. Presence of repressor or derepressor 9. Covalent modification
  • 60. 1. Enzyme Concentration i. Rate of a reaction or velocity (V) is directly proportional to the enzyme concentration
  • 61. 3. Effect of Concentration of Products • when product concentration is increased, the reaction is slowed, stopped or even reversed E1 E2 E3 A -------→ B ----------→ C -------||------→ D
  • 62. 4. Effect of Temperature
  • 63. • The temperature coefficient (Q10) is the factor by which the rate of catalysis is increased by a rise in 10°C. • The rate of reaction of most enzymes will double by a rise in 10°C.
  • 65. • Enzymes have the optimum pH between 6 and 8. Exceptions are • pepsin (with optimum pH 1-2); • alkaline phosphatase (optimum pH 9-10) and • acid phosphatase (4-5).
  • 66. 2. Effect of Substrate Concentration • As substrate concentration is increased, the velocity is also correspondingly increased in the initial phases; but the curve flattens afterwards • The maximum velocity obtained is called Vmax
  • 67.
  • 68. Substrate Saturation of an Enzyme A. Low [S] B. 50% [S] or Km C. High, saturating [S]
  • 69. Michaelis Constant (Km) • Michaelis theory, the formation of enzyme– substrate complex is a reversible reaction, while the breakdown of the complex to enzyme + product is irreversible
  • 70. • The Michaelis-Menten equation • It is relationship between initial reaction velocity vi and substrate concentration [S] • Km is Michaelis-Menten constant
  • 71. • When Vo = ½ Vmax Km = [S] Km value is substrate concentration at half- maximal velocity
  • 72. Salient Features of Km 1. Km value is substrate concentration (expressed in moles/L) at half-maximal velocity 2. Km is independent of enzyme concentration 3. It is the Signature of the enzyme 4. It denotes the affinity of the enzyme towards the substrate  Low Km - high Affinity for substrate  High Km –low affinity for substrate
  • 73. • Useful to compare Km for different substrates for one enzyme Hexokinase : D-fructose – 1.5 mM D-glucose – 0.15 mM • Useful to compare Km for a common substrate used by several enzymes Hexokinase: D-glucose – 0.05 mM Glucokinase: D-glucose – 10 mM
  • 74. Uses of Km • Experimentally, Km is a useful parameter for characterizing the number and/or types of substrates that a particular enzyme will utilize • It is the Km of the rate-limiting enzyme in many of the biochemical metabolic pathways that determines the amount of product and overall regulation of a given pathway
  • 75. Limitations of Michaelis-Menten equation • Low [S] have to be used to plot the initial segment where Vo cannot be measure precisely • Very high [S] required to to draw a the final platue • When the points observed for velocity are too scattered the hyperbolic graph cannot be drawn precisely • It is difficult to extrapolate the hyperbolic graph if required
  • 76.
  • 77. • The plot provides a useful graphical method for analysis of the Michaelis-Menten equation: • Taking the reciprocal gives V is the reaction velocity (the reaction rate) Km is the Michaelis–Menten constant Vmax is the maximum reaction velocity [S] is the substrate concentration 80
  • 78. Lineweaver–Burk Plot or Double Reciprocal Plot
  • 79. ENZYME INHIBITION  Enzyme inhibitors -are molecular agents that interfere with catalysis; slowing or halting enzymatic reactions.  There are two broad classes of enzyme inhibitors: reversible and irreversible
  • 81. Reversible Inhibition- • Reversible Inhibition –activity of enzyme is fully restored when inhibitor physically removed from system.
  • 82. COMPETITIVE INHIBITOR: competes with the substrate for the active site of an enzyme.
  • 83.
  • 84.
  • 85. Examples: • Sulphonamide (PABA) – pteroid synthetase • Dicoumarol -- Vitamin k epoxide reductase • Lovastatin -- HMG Co reductase • Allopurinol – Xanthine oxidase • Methotrexate – Dihydrofolate reductase
  • 86. NONCOMPETITIVE INHIBITION • Binding of the inhibitor does not affect binding of substrate. • No competition between substrate & inhibitor. • Formation of both EI and EIS complexes is therefore possible.
  • 87.
  • 88.
  • 89. Examples • Trypsin inhibitors in Soyabean & raw egg • Parasite Ascaris contains pepsine & trypsine inhibitors
  • 90. IRREVERSIBLE INHIBITION • The irreversible inhibitors - - Bind covalently with or destroy a functional group on an enzyme that is essential for the enzyme’s activity,
  • 91.
  • 92. Examples • Cyanide inhibits cytochrome oxidase. • Fluoride will inhibit the enzyme, enolase, and consequently the glycolysis. • Iodoacetate inhibits enzymes having-SH group in their active centers. • BAL (British Anti Lewisite; dimercaprol) is used as an antidote for heavy metal poisoning. The heavy metals act as enzyme poisons by reacting with the SH group. BAL has several SH groups with which the heavy metal ions can react and thereby their poisonous effects are reduced
  • 93.
  • 94. Effect of inhibitors… Type of inhibitor Km Vmax Irreversible No effect Decreased Reversible competitive Increased No effect Reversible noncompetitive No effect Decreased Reversible uncompetitive Decreased Decreased
  • 95. • Increasing the substrate concentration will abolish the competitive inhibition, but will not abolish noncompetitive inhibition
  • 96. Suicide inhibition • It is a special type of irreversible inhibition of enzyme activity. It is also known as mechanism based inactivation. • The inhibitor makes use of the enzyme's own reaction mechanism to inactivate it (mechanism based inactivation). • the structural analog is converted to a more effective inhibitor with the help of the enzyme to be inhibited. • This new product irreversibly binds to the enzyme and inhibits further reactions
  • 97. Examples: • DFMO (difluromethylornithine) in treatment of trypanosomia. • Allopurinol in gout • Aspirin as anti-inflammatory.
  • 99. Competitive inhibition Therapeutic agent Enzyme inhibited Clinical use Acetazolamide Carbonic anhydrase Diuretic Methotrexate Folate reductase Anti cancer Captopril Angiotensin converting enzyme Hypertension Statins HMG CoA reductase Hypercholesterolemia Allopurinol Xanthine oxidase Gout Dicoumarol Vit K epoxide reductase Anti coagulant Sulphonamide Pteroid synthetase Antibiotic Acyclovir DNAP of virus antiviral
  • 100. Competetive inhibitors Azaserine Phosphoribosyl amidotransferace Anti cancer Cytosine arabinoside DNA polymerase Anti cancer Neostigmine Ach esterase Myasthenia gravis Osteltamivir Neuraminidase Influenza Penicillin Transpeptidase Anti bacterial Isonicotinic acid hydrazide Anti tubercular
  • 101. Irreversible Inhibitors Therapeutic agent Enzyme inhibited Clinical use Cyanide Cytochrome oxidase Fluoride Enolase Glycolysis inhibition BAL (dimercaprol) Thiol group enzymes Heavy metal poisoning Iodoacetate SH group containing enzymes Heavy metal poisoning Suicide inhbition Allopurinol Xanthine oxidase Gout MAO inhibitors (deprenyl) Mono amine oxidase Mood stabilizers, antidepressant .
  • 102.
  • 103.
  • 104. Enzyme regulation • The facility to increase or reduce the rate of an enzyme catalysed reaction is a crucial part of metabolic control and therefore the adaptability of metabolism as this allows optimal utilization of possibly scarce resources. • In short, a cell must be able to control its metabolic activities in order to meet a challenge from the environment.
  • 105. Enzyme regulation … • Rate limiting step of a metabolic pathway is that reaction which determines the rate and direction of the entire pathway
  • 106. Criteria for rate limiting enzyme • Regulated enzyme its activity and /or synthesis should be regulated in vivo • Rate limiting step is catalysed practically unidirectionally or irreversible by the enzyme in vivo • Determines the direction of the entire pathway • Usually the initial step of a pathway so that the intermediates of earlier steps would not accumulate in case of feed back inhibition or repression of the rate limiting enzyme.
  • 107. Pathways Rate limiting enzymes Adipose tissue lipolysis Hs triacylglycerol lipase Cholesterol synthesis HMG CoA reductase TCA cycle alpha KG dehydrogenase Fatty acid synthesis Acetyl CoA carboxylase Gluconeogenesis Fructose 1,6 bisphosphatase , PEP caboxylase Glycogenolysis Glycogen phosphorylase Glycogenesis Glycogen synthase Urea synthesis Carbamoyl phosphate synthase Pentose phosphate pathway Glucose 6 phosphate dehydrogenase Purine biosynthesis PP ribosyl -P glutamyl amidotransferase
  • 108. Enzyme regulation Short term Covalent Non covalent / allosteric modification Long term Hormonal Gene regulation
  • 109. Enzyme regulation types Allosteric regulation Covalent modification Feedback inhibition/regulation Induction Repression Compartmentalization
  • 110. Covalent modification • Irreversible covalent modification • Activation of inactive proenzymes or zymogens by the action of partial Proteolysis (hydrolysis). • Ex: trypsinogen, chymotrypsinogen, pepsinogen, proinsulin, clotting factors, procollagen
  • 111. Covalent modification • Reversible covalent modification • This is by the process of phosphorylation of proteins on seryl, threonyl, or tyrosyl residues, catalyzed by protein kinases, is thermodynamically spontaneous. • Equally spontaneous is the hydrolytic removal of these phosphoryl groups by enzymes called protein phosphatases.
  • 112.
  • 113.
  • 114. Feedback regulation • Feedback regulation, a phenomenologic term devoid of mechanistic implications • Ex: Dietary cholesterol decreases hepatic synthesis of cholesterol – Regulation in response to dietary cholesterol involves curtailment by cholesterol or a cholesterol metabolite of the expression of the gene that encodes HMG-CoA reductase (enzyme repression)
  • 115.
  • 116. Allosteric Enzymes • An important group of enzymes that do not obey Michaelis- Menten kinetics comprises the allosteric enzymes. • These enzymes consist of multiple subunits and multiple active sites.
  • 117.
  • 118. • The activity of an allosteric enzyme may be altered by regulatory molecules that are reversibly bound to specific sites other than the catalytic sites. • The catalytic properties of allosteric enzymes can thus be adjusted to meet the immediate needs of a cell. • Allosteric enzymes are key regulators of metabolic pathways in the cell.
  • 119. Allosteric modulation • The binding of substrate to one active site can affect the properties of other active sites in the same enzyme molecule. • A possible outcome of this interaction between subunits is that the binding of substrate becomes cooperative : positive allosteric effect
  • 120. Allosteric modulation • Negative cooperativity, – in which the binding of substrate to one active site decreases the affinity of other sites for substrate • Negative allosteric modulation (also known as allosteric inhibition) For example, when 2,3- BPG binds to an allosteric site on hemoglobin, the affinity for oxygen of all subunits decreases
  • 121.
  • 122.
  • 123.
  • 124. Allosteric modulators Enzymes Activators Inhibitors Acetyl CoA caboxylase Citrate Palmitoyl CoA Aspartate transcarbamoylase ATP CTP Carbamoyl phosphate synthase (mitochondria) N acetyl glutamate (cytoplasm) PP ribose P, ATP UMP, UDP, UTP, CTP Fructose 1,6 bisphosphate Fructose 2,6 bisphosphate Glycogen synthase Glucose 6 phosphate Phosphofructokinase 1 Fructose 2, 6 bisphosphate ATP Pyruvate carboxylase Acetyl CoA
  • 125. Compartmentalization • Pathways in eukaryotic cells are often compartmentalized within cytoplasmic organelles by intracellular membranes. • Thus we find particular pathways associated with the mitochondria, the lysosomes, the peroxisomes, the endoplasmic reticulum
  • 126. Compartmentalization • Enzymes that degrade proteins and polysaccharides reside inside lysosomes • Fatty acid biosynthesis occurs in the cytosol, whereas fatty acid oxidation takes place within mitochondria
  • 127. Induction • Induction is effected through the process of derepression. • The inducer will relieve the repression on the operator site and will remove the block on the biosynthesis of the enzyme molecules. • Tryptophan pyrrolase and transaminases are induced by glucocorticoids. • Glucokinase is induced by insulin. • ALA synthase is induced by barbiturates.
  • 128. Repression • repressor acts at the gene level. • Whereas inhibition at enzyme level. • key enzyme of heme synthesis, ALA synthase is autoregulated by heme by means of repression
  • 130. ENZYMES OF DIAGNOSTIC IMPORTANCE ENZYMES TISSUE ORIGIN CLINICAL SIGNIFICANCE 1. Acid phosphatase Prostate, RBC Ca prostate 2. ALT Liver ,Muscle , heart liver disease 3. ALP Brain, Liver Bone & Hepatobiliary D 4. Amylase Pancreas Pancreatic disease 5. AST Heart, Liver MI, Hepatitis 6. Aldolase Skeletal muscle Muscular dystrophy 7. Cholinesterase Liver OP poisoning 8. Creatine kinase SM, Heart MI, Muscular dystrophy 9. GGT Hepatobiliary sys Hepatobiliary D, Alcohol 10. LDH Heart, Liver ,SM, RBC MI, Hemolysis 11. 5’-NTS Hepatobiliary tract Hepatobiliary disease 12. Prostate specific Ag Prostate Ca prostate 13. Lipase Pancreas Pancreatitis 14. Trypsin Pancreas Cystic fibrosis
  • 131. ENZYME PATTERNS IN DISEASES Hepatic disease – ALT , AST, NTP, ALP, GGT Pancreatic diseases- Amylase, lipase, Trypsin, & Chymotrypsin Myocardial infarction - CK-MB, AST, LDH
  • 132. CARDIAC MARKERS SL NO ENZYMES START APPEARS PEAK LEVEL RETURNS NORMAL 1 Myoglobin 1 hr 6-12 hr 24 hr 2 Troponin- I 4-6 hr 14-24 hr 3-5 days 3 Troponin-T 6hrs 72hrs 7-14 days 3 CK-MB 3-6 hr 12-24 hr 2-3 days 4 AST/SGOT 6-12 hr 24-48 hr 4-5 days 5 LDH 2 8-16 hr 48-72 hr 7-12 days
  • 134. FEATURES OF LD SIOENZYMES ISOENZYME EP MOBILITY TISSUE OF ORIGIN %AGE IN SERUM LD-1 Fastest Heart, RBC, kidney 30% LD-2 Faster Heart, RBC kidney 35% LD-3 Fast Brain 20% LD-4 Slow Liver 10% LD-5 Slowest Skeletal muscle 5%
  • 135. ENZYME PATTERNS IN DISEASES Hepatic disease – ALT , AST, NTP, ALP, GGT Pancreatic diseases- Amylase, lipase, Trypsin, & Chymotrypsin Myocardial infarction - CK-MB, AST, LDH
  • 136. Hepatic disease TRANSAMINASES Normal ranges: • ALT/SGPT – 10-40 IU/L • AST/SGOT - 10-30 U/L
  • 137. AST • Increased in parenchymal liver diseases • Hepatitis, malignancies • AST increased in MI
  • 138. • ALT • High increase (300-1000) – Toxic Hepatitis, Viral Hepatitis • Moderate increase (50-100) – Chronic liver disease, Cirrhosis, Hepatitis • In carcinoma of liver 5-10 fold increase (AST & ALT) AST higher than ALT 1/8/2021 143
  • 139. ENZYMES IN BILIARY TRACT DISEASES • 5’-NTD • GGT • ALP
  • 140. ALKALINE PHOSPHATASE  Ecto enzyme - Cell membrane  Metaloenzyme –Zinc  Optimum PH – 9- 10  Present in Intestinal epithelial cells,bone osteoblasts, liver, kidney, placenta  Normal range – 40-125 U/L Elevated  Children's – 2.5 times  Pregnancy
  • 141. CLINICAL SIGNIFICANCE  Moderate increase (2-3 Times)  Alcoholic hepatitis  Infective hepatitis  High increase (10-12 Times)  Obstructive jaundice - Gall Stone - Ca head pancreas Very High Levels (10-25 Times) -bone cancer - Paget's disease - Rickets - Healing bone #
  • 142. 5’-Nucleotidase/Nucleotide phosphatase • Ribonucleotide phosphohydralase • Ecto-enzyme – present on cell membrane • Marker enzyme for PM • Optimum PH – 6.6 – 7 • Normal level – 2-10 U/L
  • 143. CLINICAL SIGNIFICANCE OF NTP Moderate elevation – Hepatitis Highly Elevated – Biliary obstruction
  • 144. g-Glutamyl transferase GGT FUNCTIONS - Transfer of AA’s from one peptide to another peptide - Synthesis of glutathione - Transport of aa across the cell membrane • Location: -Liver, Kidney, Placenta • Normal range : 10-30 U/L
  • 145. CLINICAL SIGNIFICANCE • More sensitive than ALP, NTP & AST, ALT • Moderate increase – infective hepatitis • Increased in Alcoholics – proportional to Alcohol intake • Liver carcinoma increased earlier than other enzymes
  • 146. CARDIAC MARKERS • CK • AST/SGOT • LDH • CK-MB • CTn = TnI & TnT OLD CM NEW CM
  • 147. CARDIAC MARKERS SL NO ENZYMES START APPEARS PEAK LEVEL RETURNS NORMAL 1 Myoglobin 1 hr 6-12 hr 24 hr 2 Troponin- I 4-6 hr 14-24 hr 3-5 days 3 Troponin-T 6hrs 72hrs 7-14 days 3 CK-MB 3-6 hr 12-24 hr 2-3 days 4 AST/SGOT 6-12 hr 24-48 hr 4-5 days 5 LDH 2 8-16 hr 48-72 hr 7-12 days
  • 149. CREATINE KINASE Creatine CK Creatine phosphate ATP ADP • N Males -15-100U/L • Females – 10-80U/L • CK-MM – 80% • CK-MB – 5% • CK-BB – 1%
  • 150. Clinical Significance • CK-MB increased in MI • CK-MM increased Mascular Dystrophies, Crush Injuries • CK-BB increased in Cerebrovascular accidents
  • 151. LACTATE DEHYDROGENASE PYRUVATE LDH LACTATE • N- 100-200IU/L • LDH levels are 100 times more inside the RBC than in the Plasma –Hemolysis – false +ve reasults CLINICAL SIGNIFICANCE • Increased in hemolytic anemia, hepatocellular damage, mascular dystrophy, carcinomas, leukemias , MI
  • 152. • ISOENZYMES ISOENZYME SUBUNITS TISSUE OF ORIGIN % IN SERUM LDH-1 H4 HEART 30% LDH-2 H3M1 RBC 35% LDH-3 H2M2 BRAIN 20% LDH-4 H1M3 LIVER 10% LDH-5 M4 SKELETAL MUSCLE 5%
  • 153. LDH FLIPPED PATERN IN MI NORMAL MI
  • 154. CARDIAC SPECIFIC TROPONINS • Contractile proteins of all myofibrils
  • 155. Troponin-I • N- 1-10 microgm/L • Not increased in muscle injury Troponin-T • N- <50ngm/L
  • 156. PANCREATIC ENZYMES • Amylase • Lipase • PROENZYMES – Trypsinogen - Chymotrypsinogen
  • 157. AMYLASE Amylase splits starch to dextrins, maltose Types – Salivary & Pancreatic Normal range : Serum - 50-120 U/L urine - < 375 U/L M W = 55,000 Optimum PH = 6.9 – 7 Calcium activates the enzyme
  • 158. CLINICAL SIGNIFICANCE Acute pancreatitis: • 1000 times increase • Rise within 2-12 hr Peak – 12-72 hr Normal – 3-4 days • Moderate increase – chronic pancreatitis, mumps, obstruction of pancreatic duct • Urinary amylase increased in acute pancreatitis increased on 1st day & remains increased for 7-10
  • 159. LIPASE • Hydrolyse Triglycerides • Requires Colipase, bile salts • N- 10-60U/L • Location : - Pancreas • Increased in acute pancreatitis • Increases within 4-8hrs, peaks 24hrs, persists for 7-14 days
  • 160. THERAPEUTIC ENZYMES SL NO ENZYMES APPLICATION 1 Asperginase ALL 2 Streptokinase Lyse clot on MI 3 Pepsin & trypsin Used in GI disorders 4 Fibrinolysin Used on wounds 5 α1-antitrypsin Emphysema 6 Collagenase Debridement of dermal ulcers/burns
  • 161. ENZYMES OF DIAGNOSTIC IMPORTANCE ENZYMES TISSUE ORIGIN CLINICAL SIGNIFICANCE 1. Acid phosphatase Prostate, RBC Ca prostate 2. ALT Liver ,Muscle , heart liver disease 3. ALP Brain, Liver Bone & Hepatobiliary D 4. Amylase Pancreas Pancreatic disease 5. AST Heart, Liver MI, Hepatitis 6. Aldolase Skeletal muscle Muscular dystrophy 7. Cholinesterase Liver OP poisoning 8. Creatine kinase SM, Heart MI, Muscular dystrophy 9. GGT Hepatobiliary sys Hepatobiliary D, Alcohol 10. LDH Heart, Liver ,SM, RBC MI, Hemolysis 11. 5’-NTS Hepatobiliary tract Hepatobiliary disease 12. Prostate specific Ag Prostate Ca prostate 13. Lipase Pancreas Pancreatitis 14. Trypsin Pancreas Cystic fibrosis
  • 163. DEFINITION • Physically distinct forms of the same enzyme catalyzing same chemical reaction but differ in their physical & chemical properties.
  • 164. DIAGNOSTICALLY IMPORTANT ISOENZYMES  Creatine phosphokinase (CK/ CPK)  Lactate dehydrogenase (LDH)  Alkaline phosphatase (ALP)
  • 165. CREATINE PHOSPHOKINASE Cytosolic enzyme Dimeric – M chain & B chain  CK-1 = BB = Brain CK-2 = MB =Cardiac CK-3 = MM =Muscle
  • 166. ISOENZYME EP MOBILITY TISSUE OF ORIGIN MEAN %AGE IN BLOOD CK – 3 =MM LEAST SKELETAL MUSCLE 94% CK – 2 =MB INTERMEDI ATE HEART 5% CK – 1 =BB MAXIMUM BRAIN 1% CHARECTERISTICS OF CK ISOENZYMES
  • 167. LACTATE DEHYDROGENASE (LDH) LD levels in tissues 500 times greater than serum levels (cytosolic) Liver - 145 U/gm Heart - 124 U/gm Kidney - 106 U/gm Skeletal muscle - 147 U/gm RBC - 36 U/gm of Hb
  • 168. MW 134 Kda  4 polypeptide chains of 2 types – M chain & H chain 5 isoenzymes LD-1 : HHHH (H4) LD-2 : HHHM (H3M1) LD-3 : HHMM (H2M2) LD-4 : HMMM (H1M3) LD-5 : MMMM (M4)