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SEMINAR ON
X-RAY CRYSTALLOGRAPHY
Presented By
Mounik Rout
M.Pharm (Ph.technology)
Guided By
Dr. Sasmita Kumari Acharjya
1
ROLAND INSTITUTE OF PHARMACEUTICAL SCIENCES
CONTENT
INTRODUCTION
PRODUCTION OF X-RAY
BRAGG’S LAW
INSTRUMENTATION
DIFFERENT X-RAY DIFFRACTION METHODS
APPLICATION OF X-RAY DIFFRACTION
2
INTRODUCTION
X-ray crystallography is a non-destructive technique for determining the molecular
structure of a crystal .
X-ray crystallography uses the principle of X-ray diffraction to analyze the sample .
We can get 3d structure or any sample because it rotates in the sample cell and faces the
X-ray beam in different directions .
This technique helps in analyzing 3d crystal structure of biological materials .
Based on the radiations, X-ray spectroscopy is categorized in 3 type :
1. X-ray diffraction
2. X-ray Absorption
3. X-ray Fluorescence 3
.
 Diagram of x-ray passing through sample
Diffracted radiation –It is the most accurate method of analysis with high degree of
specificity than any other X-ray spectroscopy method .
X-ray diffraction(XRD) is the diffraction of incident radiation produced by crystalline
sample according to the atom present in it . 4
DIFFRACTED RADIATION
FLUORESCENCE RADIATION
INCIDENT RADIATION
TRANSMITTED(Absorbed) RADIATION
Sample
X-ray Absorption :-
When incident beam is passed through the sample then some fraction of X-ray photons
are absorbed .
 So the no of photons absorbed by the sample is used to measure the concentration of
the sample .
This is similar to any other absorption method like UV-Visible / IR spectroscopy by
giving the information about the absorbing material in the sample .
X-ray Fluorescence :-
When incident beam is passed through the sample then the electrons of the atoms of
sample gets excited by absorbing some energy , when those electrons come to ground
state from exited state they emitt some radiation which have longer wavelength than
incident beam .
By measuring the wavelength and intensity of the generated radiation analyst can
perform qualitative as well as quantitative analysis .
5
Schematic diagram of diffraction pattern
6
Production of X-ray
When high velocity of electrons will strike on metal target then X-ray will produce .
It can explain by Bohr’s atomic model .
Bohr’s atomic model
Energy of the outer shell is higher than inner shell .
7
e¯
e¯
e¯
K SHELL
L SHELL
M SHELL
N SHELL
Principle :-
If one high velocity electron will strike the atom then it knock one electron completely
from that atom and get out from that by producing a void space .
An electron from higher shell falls on the void space .
It will release energy in the form of X-ray because of coming from higher orbit to lower
orbit .
The energy of released X-ray will be equal to the difference in the energy between 2
shells .
Ex-ray = EL – EK (if e¯ falls from L shell)
=EM – EK(if e¯ falls from M shell)
=EN – EK(if e¯ falls from N shell) 8
Theory of production of X-ray:-
The high velocity eˉ will strike the anode material in a discharge tube , which leads to
production of X-ray .
The striking eˉ interact with the strong electric field of the atomic nuclei constituting
the anode material , which results deacceleration of the striking eˉ and release of energy
due to loosing of kinetic energy and radiation of photons which are responsible for
production of X-rays .
9
eˉ
X-rays
Atomic nuclei
10
The process by which photons are emitted by an eˉ is known as ‘Bremsstrahlung’ which
means deacceleration of radiation .
Initial energy of striking eˉ = Ei
Energy for X-rays(Photons) =Ex-rays
Final energy of eˉ after deacceleration = Ef
Ef = Ei - Ex-rays
Ei = Ef + Ex-rays
If all initial kinetic energy (Ei) will convert into X-rays ,then velocity of the eˉ become 0 .
So Ef = 0 ,and Ei = Ex-ray
This is the condition which will give the X-rays of highest energy and low wavelength .
11
Bragg’s law
X-ray diffraction based on Bragg’s law:-
When the X-ray is incident onto a crystal surface, its angle of incidence θ, will reflect
with the same angle of scattering, θ. And, when the path difference, d is equal to a whole
number, n, of wavelength, constructive interference will occur.
Bragg’s equation = n λ = 2dsin θ , where n is order of diffraction 12
β
α
d
A
B
C
D
θ θ
θ
θ
θ
θ
O
Y
X Z Parallel planes of crystal surface
d= Inter planner distance
Θ= Glancing angle
C , D = Diffracted X-rays
A ,B = Incident X-rays
Derivation of the equation :-
As per the fig. when X-ray falls on the crystal at angle θ then some rays will reflect from
upper plane at same angle θ .
After extrapolating the reflection line then found that there are 2 angle :-
<XOY=θ , <ZOY =θ
And AO=BX , CO=DZ so the path difference
will be XY+YZ ----- 1
Path diff. is defined as an integral multiple of
wavelength =n λ----- 2
So that n λ=XY+YZ---- 3
Taking Sin θ =
So in ∆XOY , Sin θ=
XY=OY×SIN θ
=>XY= d × SIN θ----- 4
13
L
H
L= Length of perpendicular
H= Hypotenuse
XY
OY
In ∆ZOY , SIN θ=
ZY=OY×SIN θ
ZY= d×SIN θ---- 5
Putting equ.5 in equ.3
n λ= d×SIN θ + d×SIN θ
n λ= 2d×SIN θ ----- 6------ Bragg’s equation
where n = Order of diffraction
λ = wavelength ,
d = interplanar distance
Bragg’s equation gives the relationship between:-
1.wavelength of X-rays
2. Interplanar distance in crystal planes
3.Angle of reflection
14
ZY
OY
θ =Glancing angle
SIN θ values = 0 30 45 60 90
0 ½ 1/√2 √3/2 1
15
X-ray spectrometer instrument
INSTRUMENTATION:-
.
16
e¯
Detector
Amplifier
Recorder
Monochromator
Collimator
Be window
Focusing cup
Filament heating circuit
Cathode
Anode
X-ray tube
Tungsten filament
Working & Instruments :-
High voltage electric current supplied to heat the tungsten filament to emitt electron
from cathode .
Electrons from cathode striking on anode forms X-ray which will go through Beryllium
window towards the sample through a Collimator reducing undesirable radiation .
Then it passes to Monochromator which gives required X-ray beam to the sample .
Sample have the crystal surface which diffract the X-ray beam to detector made up of
photographic type or counter types .
Detector detects the beam intensity and proceed the signal to amplifier .
Amplifier amplifies the given signal and then the signal proceeds to the recorder screen .
17
X-ray tube :- It is a large vaccum tube containing a heated cathode of Tungsten filament &
a Cu or Mo(Molybdenum) operated at higher voltage up to 60kv .
Collimator :- It passes narrow beam of X-ray by arrangement of 2 closely packed metal
plates separated by a small gap .
Monochromator:- It has 2 type :
1.Filter type – X-ray beam will partially monochromatize passing required radiation by
absorbing undesirable radiation .
2.Crystal type – It is made up of suitable crystalline materials like-NaCl , Quartz , etc.
Detector :- 1. Photographic method – A film is exposed and developed in X-rays passed
through the sample .
2. Counter Method – 1.Geiger Muller counter
2.Propertional Counter
3.Scintillation Detector
4.Solid-state semi-conductor Detector
5.Semi-conductor Detector
18
19
Detailed image of Bragg’s X-ray spectrometer
Bragg’s X-ray spectrometer method
Bragg designed a spectrometer to measure the intensity of x-ray beam following Bragg's
equation i.e. n λ = 2dsin θ
20
G
θ
θ
Crystal(sample
)
Pb slit
Ionization chamber
CH3Br
Working:-
High voltage current is applied on the tungsten filament generating heat which helps the
cathode to emitt electron .
Later the electron strikes on the anode surface producing X-rays which passes through
Beryllium window to the sample.
Collimator placed right after Be window absorbs undesirable radiation and passes
required X-ray beam towards monochromator .
Monochromator converts polychromatic beam to monochromatic beam and then passes
it to sample surface.
The crystalline sample reflect the beam at glancing angle to ionization chamber through
lead slits .
The reflected X-rays ionizes Ch3Br gas to allow current flow in the chamber by
electrodes .
Galvanometer present outside to measure the ionization current, which is require to
form a peak in respective to the intensity of X-ray reflected by the crystal .
The ionization current is measured for different values of glancing angle . A graph is
drawn between the glancing angle and ionization current. 21
.
22
θ
θ
θ
θ
θ θ
θ3
θ1 θ2
Intensity
Reflection by Crystal Graph
Rotating crystal method
.
23
Photographic film Cylindrical Camera
Motor
Rotating shaft
Crystal
Working
X-ray is generated in the X-ray tube and X-ray beam is made Monochromatic .
Monochromatic radiation will fall on the crystal Mounted on a shaft which can be
rotated at uniform angular rate .
Shaft will rotate the crystal at slow rate so that planes of crystal surface coming
successfully onto their reflecting positions .
The incident X-ray beam will diffract in many angle and fall on photographic film and
some rays will be transmitted .
In case of any rotated angle of the crystal plane the diffraction of X-ray occurs and
directed it into photographic film and no change in case when plane is parallel to the
incident X-ray . 24
Parallel to plane In a rotated angle
Each diffracted radiation produces a spot inside the photographic film present in camera .
Photographic film will be fixed perpendicular to the incident ray beam inside the
cylindrical camera .
There is 2 type of photography :- 1.Complete rotation
2.Oscillation method
Complete rotation :- series of complete revolution will takes place .
-Each plane in the crystal diffracts 4 times during rotation of 360º .
Oscillation Method :- Crystal is oscillated through an angle of 15º to 20º .
- The photographic plate is also moved accordingly .
- This method can be use to determine the size of unit cell in crystal .
25
26
Powder crystal analysis instrument
POWDER CRYSTAL OR DEBYE METHOD
This technique is a rapid analytical technique used for identification of a crystalline
material by converting it into fine powdered particles .
27
Unwrapped film
Spot formation on film
Cylindrical camera
Working :-
Powdered sample is taken in a Capillary tube inside the axis of the camera .
The transmitted beam will pass through a hole to minimize the fogging due to direct beam.
On the photographic film diffraction and reflection pattern will be recorded .
Powder particles having different orientation of plane and they will show different pattern
of cone shape whose interaction with photographic film takes place .
From the shape and distance from 2 similar pattern the identification can be done .
And the equation to get this is l= 2πr × or θ =
Here θ = Incident angle , Reflection/diffraction =2 θ(∵ of taking 2 angle in that cone)
r = radius of the film , circumference= 2πr .
Corresponds to the scattering angle = 360º
l = Length of arc of a circle or length of any 2 similar pattern .
28
Θ
360º
360l
4πr
APPLICATION
Used for the identification of unknown crystalline materials .
For characterization of crystalline materials .
Polymer characterization can be done .
Used to identify impurity .
Determine the unit cell dimensions .
Measurement of sample purity .
Used to carried out drug excipient incompatibility study .
Uses to analyze 3d crystal structure of biological materials .
The powder method is used to determine the value of the lattice parameters accurately .
Now a days often used to probe specific ways in how the structure of a material , drug
will interact in certain environments .
29
1. REFERENCES
2. Critchley, Liam. (2020, October 16). The Applications & Principles of
X-Ray Crystallography.
3. AZoM. Retrieved on March 10, 2022 from
https://www.azom.com/article.aspx?ArticleID=18684.
4. https://youtu.be/HjKI4Kh1RgU
5. Critchley, Liam. 2020. The Applications & Principles of X-Ray
Crystallography. AZoM, viewed 10
6. March 2022, https://www.azom.com/article.aspx?ArticleID=18684.
7. Instrumental methods of analysis –Willards, 7th ed . ISBN:
9788123909431
8. Modern analytical techniques in failure analysis of aerospace,
chemical, and oil and gas industries, ISBN 9780081001172
30
THANK YOU
31

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XRD.pptx

  • 1. SEMINAR ON X-RAY CRYSTALLOGRAPHY Presented By Mounik Rout M.Pharm (Ph.technology) Guided By Dr. Sasmita Kumari Acharjya 1 ROLAND INSTITUTE OF PHARMACEUTICAL SCIENCES
  • 2. CONTENT INTRODUCTION PRODUCTION OF X-RAY BRAGG’S LAW INSTRUMENTATION DIFFERENT X-RAY DIFFRACTION METHODS APPLICATION OF X-RAY DIFFRACTION 2
  • 3. INTRODUCTION X-ray crystallography is a non-destructive technique for determining the molecular structure of a crystal . X-ray crystallography uses the principle of X-ray diffraction to analyze the sample . We can get 3d structure or any sample because it rotates in the sample cell and faces the X-ray beam in different directions . This technique helps in analyzing 3d crystal structure of biological materials . Based on the radiations, X-ray spectroscopy is categorized in 3 type : 1. X-ray diffraction 2. X-ray Absorption 3. X-ray Fluorescence 3
  • 4. .  Diagram of x-ray passing through sample Diffracted radiation –It is the most accurate method of analysis with high degree of specificity than any other X-ray spectroscopy method . X-ray diffraction(XRD) is the diffraction of incident radiation produced by crystalline sample according to the atom present in it . 4 DIFFRACTED RADIATION FLUORESCENCE RADIATION INCIDENT RADIATION TRANSMITTED(Absorbed) RADIATION Sample
  • 5. X-ray Absorption :- When incident beam is passed through the sample then some fraction of X-ray photons are absorbed .  So the no of photons absorbed by the sample is used to measure the concentration of the sample . This is similar to any other absorption method like UV-Visible / IR spectroscopy by giving the information about the absorbing material in the sample . X-ray Fluorescence :- When incident beam is passed through the sample then the electrons of the atoms of sample gets excited by absorbing some energy , when those electrons come to ground state from exited state they emitt some radiation which have longer wavelength than incident beam . By measuring the wavelength and intensity of the generated radiation analyst can perform qualitative as well as quantitative analysis . 5
  • 6. Schematic diagram of diffraction pattern 6
  • 7. Production of X-ray When high velocity of electrons will strike on metal target then X-ray will produce . It can explain by Bohr’s atomic model . Bohr’s atomic model Energy of the outer shell is higher than inner shell . 7 e¯ e¯ e¯ K SHELL L SHELL M SHELL N SHELL
  • 8. Principle :- If one high velocity electron will strike the atom then it knock one electron completely from that atom and get out from that by producing a void space . An electron from higher shell falls on the void space . It will release energy in the form of X-ray because of coming from higher orbit to lower orbit . The energy of released X-ray will be equal to the difference in the energy between 2 shells . Ex-ray = EL – EK (if e¯ falls from L shell) =EM – EK(if e¯ falls from M shell) =EN – EK(if e¯ falls from N shell) 8
  • 9. Theory of production of X-ray:- The high velocity eˉ will strike the anode material in a discharge tube , which leads to production of X-ray . The striking eˉ interact with the strong electric field of the atomic nuclei constituting the anode material , which results deacceleration of the striking eˉ and release of energy due to loosing of kinetic energy and radiation of photons which are responsible for production of X-rays . 9 eˉ X-rays Atomic nuclei
  • 10. 10
  • 11. The process by which photons are emitted by an eˉ is known as ‘Bremsstrahlung’ which means deacceleration of radiation . Initial energy of striking eˉ = Ei Energy for X-rays(Photons) =Ex-rays Final energy of eˉ after deacceleration = Ef Ef = Ei - Ex-rays Ei = Ef + Ex-rays If all initial kinetic energy (Ei) will convert into X-rays ,then velocity of the eˉ become 0 . So Ef = 0 ,and Ei = Ex-ray This is the condition which will give the X-rays of highest energy and low wavelength . 11
  • 12. Bragg’s law X-ray diffraction based on Bragg’s law:- When the X-ray is incident onto a crystal surface, its angle of incidence θ, will reflect with the same angle of scattering, θ. And, when the path difference, d is equal to a whole number, n, of wavelength, constructive interference will occur. Bragg’s equation = n λ = 2dsin θ , where n is order of diffraction 12 β α d A B C D θ θ θ θ θ θ O Y X Z Parallel planes of crystal surface d= Inter planner distance Θ= Glancing angle C , D = Diffracted X-rays A ,B = Incident X-rays
  • 13. Derivation of the equation :- As per the fig. when X-ray falls on the crystal at angle θ then some rays will reflect from upper plane at same angle θ . After extrapolating the reflection line then found that there are 2 angle :- <XOY=θ , <ZOY =θ And AO=BX , CO=DZ so the path difference will be XY+YZ ----- 1 Path diff. is defined as an integral multiple of wavelength =n λ----- 2 So that n λ=XY+YZ---- 3 Taking Sin θ = So in ∆XOY , Sin θ= XY=OY×SIN θ =>XY= d × SIN θ----- 4 13 L H L= Length of perpendicular H= Hypotenuse XY OY
  • 14. In ∆ZOY , SIN θ= ZY=OY×SIN θ ZY= d×SIN θ---- 5 Putting equ.5 in equ.3 n λ= d×SIN θ + d×SIN θ n λ= 2d×SIN θ ----- 6------ Bragg’s equation where n = Order of diffraction λ = wavelength , d = interplanar distance Bragg’s equation gives the relationship between:- 1.wavelength of X-rays 2. Interplanar distance in crystal planes 3.Angle of reflection 14 ZY OY θ =Glancing angle SIN θ values = 0 30 45 60 90 0 ½ 1/√2 √3/2 1
  • 17. Working & Instruments :- High voltage electric current supplied to heat the tungsten filament to emitt electron from cathode . Electrons from cathode striking on anode forms X-ray which will go through Beryllium window towards the sample through a Collimator reducing undesirable radiation . Then it passes to Monochromator which gives required X-ray beam to the sample . Sample have the crystal surface which diffract the X-ray beam to detector made up of photographic type or counter types . Detector detects the beam intensity and proceed the signal to amplifier . Amplifier amplifies the given signal and then the signal proceeds to the recorder screen . 17
  • 18. X-ray tube :- It is a large vaccum tube containing a heated cathode of Tungsten filament & a Cu or Mo(Molybdenum) operated at higher voltage up to 60kv . Collimator :- It passes narrow beam of X-ray by arrangement of 2 closely packed metal plates separated by a small gap . Monochromator:- It has 2 type : 1.Filter type – X-ray beam will partially monochromatize passing required radiation by absorbing undesirable radiation . 2.Crystal type – It is made up of suitable crystalline materials like-NaCl , Quartz , etc. Detector :- 1. Photographic method – A film is exposed and developed in X-rays passed through the sample . 2. Counter Method – 1.Geiger Muller counter 2.Propertional Counter 3.Scintillation Detector 4.Solid-state semi-conductor Detector 5.Semi-conductor Detector 18
  • 19. 19 Detailed image of Bragg’s X-ray spectrometer
  • 20. Bragg’s X-ray spectrometer method Bragg designed a spectrometer to measure the intensity of x-ray beam following Bragg's equation i.e. n λ = 2dsin θ 20 G θ θ Crystal(sample ) Pb slit Ionization chamber CH3Br
  • 21. Working:- High voltage current is applied on the tungsten filament generating heat which helps the cathode to emitt electron . Later the electron strikes on the anode surface producing X-rays which passes through Beryllium window to the sample. Collimator placed right after Be window absorbs undesirable radiation and passes required X-ray beam towards monochromator . Monochromator converts polychromatic beam to monochromatic beam and then passes it to sample surface. The crystalline sample reflect the beam at glancing angle to ionization chamber through lead slits . The reflected X-rays ionizes Ch3Br gas to allow current flow in the chamber by electrodes . Galvanometer present outside to measure the ionization current, which is require to form a peak in respective to the intensity of X-ray reflected by the crystal . The ionization current is measured for different values of glancing angle . A graph is drawn between the glancing angle and ionization current. 21
  • 23. Rotating crystal method . 23 Photographic film Cylindrical Camera Motor Rotating shaft Crystal
  • 24. Working X-ray is generated in the X-ray tube and X-ray beam is made Monochromatic . Monochromatic radiation will fall on the crystal Mounted on a shaft which can be rotated at uniform angular rate . Shaft will rotate the crystal at slow rate so that planes of crystal surface coming successfully onto their reflecting positions . The incident X-ray beam will diffract in many angle and fall on photographic film and some rays will be transmitted . In case of any rotated angle of the crystal plane the diffraction of X-ray occurs and directed it into photographic film and no change in case when plane is parallel to the incident X-ray . 24 Parallel to plane In a rotated angle
  • 25. Each diffracted radiation produces a spot inside the photographic film present in camera . Photographic film will be fixed perpendicular to the incident ray beam inside the cylindrical camera . There is 2 type of photography :- 1.Complete rotation 2.Oscillation method Complete rotation :- series of complete revolution will takes place . -Each plane in the crystal diffracts 4 times during rotation of 360º . Oscillation Method :- Crystal is oscillated through an angle of 15º to 20º . - The photographic plate is also moved accordingly . - This method can be use to determine the size of unit cell in crystal . 25
  • 27. POWDER CRYSTAL OR DEBYE METHOD This technique is a rapid analytical technique used for identification of a crystalline material by converting it into fine powdered particles . 27 Unwrapped film Spot formation on film Cylindrical camera
  • 28. Working :- Powdered sample is taken in a Capillary tube inside the axis of the camera . The transmitted beam will pass through a hole to minimize the fogging due to direct beam. On the photographic film diffraction and reflection pattern will be recorded . Powder particles having different orientation of plane and they will show different pattern of cone shape whose interaction with photographic film takes place . From the shape and distance from 2 similar pattern the identification can be done . And the equation to get this is l= 2πr × or θ = Here θ = Incident angle , Reflection/diffraction =2 θ(∵ of taking 2 angle in that cone) r = radius of the film , circumference= 2πr . Corresponds to the scattering angle = 360º l = Length of arc of a circle or length of any 2 similar pattern . 28 Θ 360º 360l 4πr
  • 29. APPLICATION Used for the identification of unknown crystalline materials . For characterization of crystalline materials . Polymer characterization can be done . Used to identify impurity . Determine the unit cell dimensions . Measurement of sample purity . Used to carried out drug excipient incompatibility study . Uses to analyze 3d crystal structure of biological materials . The powder method is used to determine the value of the lattice parameters accurately . Now a days often used to probe specific ways in how the structure of a material , drug will interact in certain environments . 29
  • 30. 1. REFERENCES 2. Critchley, Liam. (2020, October 16). The Applications & Principles of X-Ray Crystallography. 3. AZoM. Retrieved on March 10, 2022 from https://www.azom.com/article.aspx?ArticleID=18684. 4. https://youtu.be/HjKI4Kh1RgU 5. Critchley, Liam. 2020. The Applications & Principles of X-Ray Crystallography. AZoM, viewed 10 6. March 2022, https://www.azom.com/article.aspx?ArticleID=18684. 7. Instrumental methods of analysis –Willards, 7th ed . ISBN: 9788123909431 8. Modern analytical techniques in failure analysis of aerospace, chemical, and oil and gas industries, ISBN 9780081001172 30