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GENE THERAPY
        BY
    B.E.N 2012
(1)   Introduction
(2)   Classes of gene therapy
(3)   Strategies for gene therapy
(4)   Methods used for gene therapy
(5)   Factors that have kept gene therapy ineffective for
      treatment of genetic diseases
(6)   Developments in gene therapy research
(7)   RNA interference
(8)   Ethical concerns
Introduction
 Gene therapy is a technique that involves insertion of
  normal genes to correct defective genes responsible
  for disease development.

   It is the use of DNA as a pharmaceutical agent to treat
    disease.

    It derives its name from the idea that DNA can be
    used to supplement or alter genes within an
    individual's cells as a therapy to treat disease
   The most common form of gene therapy
    involves using DNA that encodes a functional,
    therapeutic gene in order to replace a mutated
    gene.

   Other forms involve directly correcting a
    mutation or using DNA that encodes a
    therapeutic protein drug (rather than a natural
    human gene) to provide treatment.
   Gene therapy was first conceptualized in
    1972, with the authors urging caution before
    commencing gene therapy studies in
    humans.

      The first FDA-approved gene therapy
    experiment in the United States occurred in
    1990, when Ashanti DeSilva was treated for
    ADA-SCID. Since then, over 1,700 clinical
    trials have been conducted using a number
    of techniques for gene therapy.
Researchers may use one of several approaches
          for correcting faulty genes,

     A normal gene may be inserted into a
    nonspecific location within the genome to
    replace a nonfunctional gene. This approach is
    most common
   An abnormal gene could be swapped for a
    normal gene through homologous
    recombination.

   The abnormal gene could be repaired
    through selective reverse mutation, which
    returns the gene to its normal function.

   The regulation (the degree to which a gene is
    turned on or off) of a particular gene could
    be altered
   Somatic Gene Therapy
   In somatic gene therapy, the therapeutic genes are
    transferred into the somatic cells or body of a patient.

   Any modifications and effects will be restricted to the
    individual patient only and will not be inherited by the
    patient's offspring or later generations.

    Somatic gene therapy represents the mainstream line
    of current basic and clinical research, where mRNA is
    used to treat a disease in an individual.
   In germ line gene therapy, Germ cells, i.e., sperm or eggs,
    are modified by the introduction of functional genes, which
    are integrated into their genomes.

   This would allow the therapy to be heritable and passed on
    to later generations (offsprings).

   Although this should, in theory, be highly effective in
    counteracting genetic disorders and hereditary diseases,
    many jurisdictions prohibit this for application in human
    beings for a variety of technical and ethical reasons
Pronuclear (PI) Injection
(3) Strategies for Gene Therapy
1. Ex vivo, which means “outside the body”
 Cells from the patient’s blood or bone marrow are
   removed and grown in the laboratory.

   They are then exposed to a virus carrying the
    desired gene. The virus enters the cells, and the
    desired gene becomes part of the DNA of the cells.

   The cells are allowed to grow in the laboratory
    before being returned to the patient by injection into
    a vein or bone marrow.
2. In vivo, which means “inside the body”
 No cells are removed from the patient’s body.
   Instead, vectors are used to deliver the desired
   gene to cells in the patient’s body.

3. In Situ
   Vector is placed directly into the affected tissues.
List of Common Genetic Disorders
      Disorder           Mutation      Chromosome

Angelman syndrome          DCP                 15

Color blindness             P                  X

Cystic fibrosis             P                  7

Down syndrome               C                  21

Haemophilia                 P                  X


Klinefelter's syndrome      C                  X
Two methods are involved
(ii) Non-viral mediated gene delivery method

(iii) Viral mediated gene delivery method
(I)Non-viral mediated gene delivery method
(i)Direct injection of therapeutic DNA into target cells
This approach is limited in its application because it can
   be used only with certain tissues and requires large
   amounts of DNA

 (ii) Liposomes
Creation of an artificial lipid sphere with an aqueous core
In this method, the liposome, which carries the
    therapeutic DNA, is capable of passing the DNA
    through the target cell's membrane
(iii) Inorganic nanoparticles.
Chemically linking the DNA to a molecule that will bind to special
     cell receptors. Once bound to these receptors, the therapeutic
     DNA constructs are engulfed by the cell membrane and passed
     into the interior of the target cell

(iv) Researchers also are experimenting with introducing a
     47th (artificial human) chromosome into target cells.
This chromosome would exist autonomously alongside the
   standard 46, not affecting their workings or causing any
   mutations.
A problem with this potential method is the difficulty in delivering
   such a large molecule to the nucleus of a target cell.
   There                    are                     other
    several methods for non-viral gene therapy, including,
    electroporation, the gene gun, sonoporation,
    magnetofection etc.

   E.g In 2003 a University of California, Los Angeles research team
    inserted genes into the brain using liposomes coated in a polymer called
    polyethylene glycol. The transfer of genes into the brain is a significant
    achievement because viral vectors are too big to get across the
    blood-brain barrier. This method has potential for treating
    Parkinson's disease.
Gene gun
               OR
  microprojectile
  bombardment
  “biolistics”


Tiny DNA-
coated particles
are shot into
the cells
The Gene Gun                       Helium chamber


                                        Rupture disk



                                          Macrocarrier


                                        DNA coated
                                        gold particle


                                        Stopping screen



                                        Focusing device



PDS1000 Microparticle Delivery System     Target tissue
This method employs viruses as vehicles to transport
the desired genes to the target cells (These are
recombinant viruses (sometimes called
biological nanoparticles

    Different types of viruses used as vectors
                   for gene therapy
Retroviruses

A class of viruses that can create double-stranded
DNA copies of their RNA genomes
   Adenoviruses - A class of viruses with double-
    stranded DNA genomes that cause respiratory,
    intestinal, and eye infections in humans

   Adeno-associated viruses - A class of small, single-
    stranded DNA viruses that can insert their genetic
    material at a specific site on chromosome 19

Herpes simplex viruses
A class of double-stranded DNA viruses that infect a
 particular cell type, eg. Neurons
   In most gene therapy studies, a "normal" gene is
    inserted into the genome to replace an "abnormal,"
    disease-causing gene

   A carrier molecule called a vector must be used to
    deliver the therapeutic gene to the patient's target
    cells

   Currently, the most common vector is a virus that has
    been genetically altered to carry normal human DNA
   Scientists have manipulated the virus genome to
    remove disease-causing genes and insert therapeutic
    genes.

   When target cells are infected with the viral vector.
    The vector then unloads its genetic material
    containing the therapeutic human gene

   Then, generation of a functional protein product from
    the therapeutic gene restores the target cell to a
    normal state.
(i) Short-lived nature of gene therapy
       -Problems with integrating therapeutic DNA into the
   genome and the mortal nature of many cells prevent gene
   therapy from achieving any long-term benefits. Patients
   will have to undergo multiple rounds of gene therapy
(ii) Immune response
      - Anytime a foreign object is introduced into human
   tissues, the immune system is designed to attack the
   invader
Furthermore, the immune system's enhanced response
  to invaders it has seen before makes it difficult for
  gene therapy to be repeated in patients

(iii) Problems with viral vectors
   -Though viruses are the carriers of choice in most gene
   therapy studies, there some possible potential
   problems to the patient; toxicity, immune and
   inflammatory responses and the fear that the viral
   vector, once inside the patient, may recover its ability
   to cause disease.
(iv) Multigene disorders
   -Conditions or disorders that arise from
 mutations in a single gene are the best
 candidates for gene therapy
  -Unfortunately, some of the most commonly
 occurring disorders, such as heart disease,
 HBP, arthritis, and diabetes, are caused by the
 combined effects of variations in many genes.

 - Multigene or multifactorial disorders such as
 these would be especially difficult to treat
 effectively using gene therapy.
    If the DNA is integrated in the wrong place in the
    genome, for example in a tumor suppressor gene, it
    could induce a tumor

   This has occurred in clinical trials for X-linked severe
    combined immunodeficiency (X-SCID) patients, in
    which hematopoietic stem cells were transduced with a
    corrective transgene using a retrovirus and this led to
    the development of T cell leukemia in 3 of 20 patients.
   Since gene therapy is relatively new and at an
    experimental stage, it is an expensive treatment to
    undertake.;

   This explains why current studies are focused on
    illnesses commonly found in developed countries,
    where more people can afford to pay for treatment.

    It may take decades before developing countries
    can take advantage of this technology.
   Scientists currently know the functions of
    only a few genes. Hence, gene therapy can
    address only some genes that cause a
    particular disease.

   Worse, it is not known exactly whether genes
    have more than one function, which creates
    uncertainty as to whether replacing such
    genes is indeed desirable.
Generally, Gene therapy is very promising

Sickle cell was successfully treated in mice.
 (2002)
 Thalassaemia, cystic fibrosis, and some
 cancers. (October 11, 2002).
   Nanotechnology + gene therapy yields treatment
    to cancer. March, 2009. The School of Pharmacy
    in London is tested a treatment in mice, which
    delivers genes wrapped in nanoparticles to target
    and destroy hard-to-reach cancer cells

   Results of world's first gene therapy for inherited
    blindness show sight improvement. 28 April
    2008. UK researchers from the UCL Institute of
    Ophthalmology and Biomedical Research Centre
    announced results from the world’s first clinical
    trial
   Leber's congenital amaurosis, a type of inherited
    childhood blindness caused by a single abnormal gene.
    The procedure has already been successful at restoring
    vision for dogs. This is the first trial to use gene therapy
    in an operation to treat blindness in humans.

   Gene Therapy cured deafness in guinea pigs(Feb
    2005)-A gene, called Atoh1, which stimulates the hair
    cells' growth, was delivered to the cochlea by an
    adenovirus
 Aug. 24, 2011 -- Nine years after getting gene therapy
  for "bubble boy disease," 14 out of 16 children are doing
  well, UK researchers report.
 "Bubble boy disease" — more accurately called severe
  combined immunodeficiency, or SCID — results from a
  malfunctioning gene in the bone marrow, which
  produces immune cells.
 Because the immune system is so severely weakened,
  any infection or disease could result in death. The
  children are therefore forced to live very sheltered,
  isolated lives.
11 children with “bubble boy disease.”
1 child did not respond to treatment
8 children cured
2 children came down with leukemia
THERAPY IN NEWS

            ‘Slimming Gene’
             Discovered That
             Regulates Body
             Fat
(7) RNA INTERFERENCE OR GENE SILENCING
May be a new way to treat Huntington's d’se.
Basic mechanism
 Short pieces of double-stranded RNA (siRNAs) are
  used by cells to degrade mRNA of a particular
  sequence.

   If a siRNA is designed to match the mRNA copied
    from a faulty gene, then the abnormal protein product
    of that gene will not be produced. (March 13, 2003).
   RNAi is an RNA-dependent gene silencing process that is
    controlled by the RNA-induced silencing complex (RISC)
    and is initiated by short double-stranded RNA molecules in
    a cell's cytoplasm, where they interact with the catalytic
    RISC component argonaute.

   RNAi is initiated by the enzyme Dicer, which cleaves long
    double-stranded RNA (dsRNA) molecules into short
    fragments of ~20 nucleotides that are called siRNAs.
   Each siRNA is unwound into two single-stranded (ss)
    ssRNAs, namely the passenger strand and the guide
    strand.
   The passenger strand will be degraded, and the
    guide strand is incorporated into the RNA-induced
    silencing complex (RISC)

   The most well-studied outcome is post-
    transcriptional gene silencing, which occurs when
    the guide strand base pairs with a complementary
    sequence of a messenger RNA molecule and
    induces cleavage by Argonaute, the catalytic
    component of the RISC complex.
   In 2006, Andrew Fire and Craig C. Mello shared the
    Nobel Prize in Physiology for their work on RNAi
    interference in the nematode worm C. elegans,
    which they published in 1998.
Some Questions to Consider
 What is normal and what is a disability or disorder,
  and who decides?

   Are disabilities diseases? Do they need to be cured
    or prevented?

   Does searching for a cure demean the lives of
    individuals presently affected by disabilities?
Ethical Considerations cont…
 Who should pay?

 Preliminary attempts at gene therapy are exorbitantly
  expensive. Who will have access to these therapies?
  Who will pay for their use?
 Gene therapy currently cost up to $200,000 per
  treatment.

  Unforeseen consequences
Is it possible that eliminating defective genes from
our genome may have unforeseen consequences
 Religious Objections
 Majority of the world believes in some type of

  higher power.

   The majority of religions states that everyone
     should be happy with what they have.

   Do we have the right to play GOD?
1. gene therapy

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1. gene therapy

  • 1. GENE THERAPY BY B.E.N 2012
  • 2. (1) Introduction (2) Classes of gene therapy (3) Strategies for gene therapy (4) Methods used for gene therapy (5) Factors that have kept gene therapy ineffective for treatment of genetic diseases (6) Developments in gene therapy research (7) RNA interference (8) Ethical concerns
  • 3. Introduction  Gene therapy is a technique that involves insertion of normal genes to correct defective genes responsible for disease development.  It is the use of DNA as a pharmaceutical agent to treat disease.  It derives its name from the idea that DNA can be used to supplement or alter genes within an individual's cells as a therapy to treat disease
  • 4. The most common form of gene therapy involves using DNA that encodes a functional, therapeutic gene in order to replace a mutated gene.  Other forms involve directly correcting a mutation or using DNA that encodes a therapeutic protein drug (rather than a natural human gene) to provide treatment.
  • 5. Gene therapy was first conceptualized in 1972, with the authors urging caution before commencing gene therapy studies in humans.  The first FDA-approved gene therapy experiment in the United States occurred in 1990, when Ashanti DeSilva was treated for ADA-SCID. Since then, over 1,700 clinical trials have been conducted using a number of techniques for gene therapy.
  • 6. Researchers may use one of several approaches for correcting faulty genes,  A normal gene may be inserted into a nonspecific location within the genome to replace a nonfunctional gene. This approach is most common
  • 7. An abnormal gene could be swapped for a normal gene through homologous recombination.  The abnormal gene could be repaired through selective reverse mutation, which returns the gene to its normal function.  The regulation (the degree to which a gene is turned on or off) of a particular gene could be altered
  • 8. Somatic Gene Therapy  In somatic gene therapy, the therapeutic genes are transferred into the somatic cells or body of a patient.  Any modifications and effects will be restricted to the individual patient only and will not be inherited by the patient's offspring or later generations.  Somatic gene therapy represents the mainstream line of current basic and clinical research, where mRNA is used to treat a disease in an individual.
  • 9. In germ line gene therapy, Germ cells, i.e., sperm or eggs, are modified by the introduction of functional genes, which are integrated into their genomes.  This would allow the therapy to be heritable and passed on to later generations (offsprings).  Although this should, in theory, be highly effective in counteracting genetic disorders and hereditary diseases, many jurisdictions prohibit this for application in human beings for a variety of technical and ethical reasons
  • 10.
  • 12. (3) Strategies for Gene Therapy 1. Ex vivo, which means “outside the body”  Cells from the patient’s blood or bone marrow are removed and grown in the laboratory.  They are then exposed to a virus carrying the desired gene. The virus enters the cells, and the desired gene becomes part of the DNA of the cells.  The cells are allowed to grow in the laboratory before being returned to the patient by injection into a vein or bone marrow.
  • 13. 2. In vivo, which means “inside the body”  No cells are removed from the patient’s body. Instead, vectors are used to deliver the desired gene to cells in the patient’s body. 3. In Situ Vector is placed directly into the affected tissues.
  • 14. List of Common Genetic Disorders Disorder Mutation Chromosome Angelman syndrome DCP 15 Color blindness P X Cystic fibrosis P 7 Down syndrome C 21 Haemophilia P X Klinefelter's syndrome C X
  • 15.
  • 16. Two methods are involved (ii) Non-viral mediated gene delivery method (iii) Viral mediated gene delivery method
  • 17. (I)Non-viral mediated gene delivery method (i)Direct injection of therapeutic DNA into target cells This approach is limited in its application because it can be used only with certain tissues and requires large amounts of DNA (ii) Liposomes Creation of an artificial lipid sphere with an aqueous core In this method, the liposome, which carries the therapeutic DNA, is capable of passing the DNA through the target cell's membrane
  • 18. (iii) Inorganic nanoparticles. Chemically linking the DNA to a molecule that will bind to special cell receptors. Once bound to these receptors, the therapeutic DNA constructs are engulfed by the cell membrane and passed into the interior of the target cell (iv) Researchers also are experimenting with introducing a 47th (artificial human) chromosome into target cells. This chromosome would exist autonomously alongside the standard 46, not affecting their workings or causing any mutations. A problem with this potential method is the difficulty in delivering such a large molecule to the nucleus of a target cell.
  • 19. There are other several methods for non-viral gene therapy, including, electroporation, the gene gun, sonoporation, magnetofection etc.  E.g In 2003 a University of California, Los Angeles research team inserted genes into the brain using liposomes coated in a polymer called polyethylene glycol. The transfer of genes into the brain is a significant achievement because viral vectors are too big to get across the blood-brain barrier. This method has potential for treating Parkinson's disease.
  • 20. Gene gun OR microprojectile bombardment “biolistics” Tiny DNA- coated particles are shot into the cells
  • 21. The Gene Gun Helium chamber Rupture disk Macrocarrier DNA coated gold particle Stopping screen Focusing device PDS1000 Microparticle Delivery System Target tissue
  • 22. This method employs viruses as vehicles to transport the desired genes to the target cells (These are recombinant viruses (sometimes called biological nanoparticles Different types of viruses used as vectors for gene therapy Retroviruses A class of viruses that can create double-stranded DNA copies of their RNA genomes
  • 23. Adenoviruses - A class of viruses with double- stranded DNA genomes that cause respiratory, intestinal, and eye infections in humans  Adeno-associated viruses - A class of small, single- stranded DNA viruses that can insert their genetic material at a specific site on chromosome 19 Herpes simplex viruses A class of double-stranded DNA viruses that infect a particular cell type, eg. Neurons
  • 24. In most gene therapy studies, a "normal" gene is inserted into the genome to replace an "abnormal," disease-causing gene  A carrier molecule called a vector must be used to deliver the therapeutic gene to the patient's target cells  Currently, the most common vector is a virus that has been genetically altered to carry normal human DNA
  • 25. Scientists have manipulated the virus genome to remove disease-causing genes and insert therapeutic genes.  When target cells are infected with the viral vector. The vector then unloads its genetic material containing the therapeutic human gene  Then, generation of a functional protein product from the therapeutic gene restores the target cell to a normal state.
  • 26.
  • 27. (i) Short-lived nature of gene therapy -Problems with integrating therapeutic DNA into the genome and the mortal nature of many cells prevent gene therapy from achieving any long-term benefits. Patients will have to undergo multiple rounds of gene therapy (ii) Immune response - Anytime a foreign object is introduced into human tissues, the immune system is designed to attack the invader
  • 28. Furthermore, the immune system's enhanced response to invaders it has seen before makes it difficult for gene therapy to be repeated in patients (iii) Problems with viral vectors -Though viruses are the carriers of choice in most gene therapy studies, there some possible potential problems to the patient; toxicity, immune and inflammatory responses and the fear that the viral vector, once inside the patient, may recover its ability to cause disease.
  • 29. (iv) Multigene disorders -Conditions or disorders that arise from mutations in a single gene are the best candidates for gene therapy -Unfortunately, some of the most commonly occurring disorders, such as heart disease, HBP, arthritis, and diabetes, are caused by the combined effects of variations in many genes. - Multigene or multifactorial disorders such as these would be especially difficult to treat effectively using gene therapy.
  • 30. If the DNA is integrated in the wrong place in the genome, for example in a tumor suppressor gene, it could induce a tumor  This has occurred in clinical trials for X-linked severe combined immunodeficiency (X-SCID) patients, in which hematopoietic stem cells were transduced with a corrective transgene using a retrovirus and this led to the development of T cell leukemia in 3 of 20 patients.
  • 31. Since gene therapy is relatively new and at an experimental stage, it is an expensive treatment to undertake.;  This explains why current studies are focused on illnesses commonly found in developed countries, where more people can afford to pay for treatment.  It may take decades before developing countries can take advantage of this technology.
  • 32.
  • 33. Scientists currently know the functions of only a few genes. Hence, gene therapy can address only some genes that cause a particular disease.  Worse, it is not known exactly whether genes have more than one function, which creates uncertainty as to whether replacing such genes is indeed desirable.
  • 34. Generally, Gene therapy is very promising Sickle cell was successfully treated in mice. (2002)  Thalassaemia, cystic fibrosis, and some cancers. (October 11, 2002).
  • 35. Nanotechnology + gene therapy yields treatment to cancer. March, 2009. The School of Pharmacy in London is tested a treatment in mice, which delivers genes wrapped in nanoparticles to target and destroy hard-to-reach cancer cells  Results of world's first gene therapy for inherited blindness show sight improvement. 28 April 2008. UK researchers from the UCL Institute of Ophthalmology and Biomedical Research Centre announced results from the world’s first clinical trial
  • 36. Leber's congenital amaurosis, a type of inherited childhood blindness caused by a single abnormal gene. The procedure has already been successful at restoring vision for dogs. This is the first trial to use gene therapy in an operation to treat blindness in humans.  Gene Therapy cured deafness in guinea pigs(Feb 2005)-A gene, called Atoh1, which stimulates the hair cells' growth, was delivered to the cochlea by an adenovirus
  • 37.  Aug. 24, 2011 -- Nine years after getting gene therapy for "bubble boy disease," 14 out of 16 children are doing well, UK researchers report.  "Bubble boy disease" — more accurately called severe combined immunodeficiency, or SCID — results from a malfunctioning gene in the bone marrow, which produces immune cells.  Because the immune system is so severely weakened, any infection or disease could result in death. The children are therefore forced to live very sheltered, isolated lives.
  • 38. 11 children with “bubble boy disease.” 1 child did not respond to treatment 8 children cured 2 children came down with leukemia
  • 39. THERAPY IN NEWS ‘Slimming Gene’ Discovered That Regulates Body Fat
  • 40. (7) RNA INTERFERENCE OR GENE SILENCING May be a new way to treat Huntington's d’se. Basic mechanism  Short pieces of double-stranded RNA (siRNAs) are used by cells to degrade mRNA of a particular sequence.  If a siRNA is designed to match the mRNA copied from a faulty gene, then the abnormal protein product of that gene will not be produced. (March 13, 2003).
  • 41. RNAi is an RNA-dependent gene silencing process that is controlled by the RNA-induced silencing complex (RISC) and is initiated by short double-stranded RNA molecules in a cell's cytoplasm, where they interact with the catalytic RISC component argonaute.  RNAi is initiated by the enzyme Dicer, which cleaves long double-stranded RNA (dsRNA) molecules into short fragments of ~20 nucleotides that are called siRNAs.  Each siRNA is unwound into two single-stranded (ss) ssRNAs, namely the passenger strand and the guide strand.
  • 42. The passenger strand will be degraded, and the guide strand is incorporated into the RNA-induced silencing complex (RISC)  The most well-studied outcome is post- transcriptional gene silencing, which occurs when the guide strand base pairs with a complementary sequence of a messenger RNA molecule and induces cleavage by Argonaute, the catalytic component of the RISC complex.  In 2006, Andrew Fire and Craig C. Mello shared the Nobel Prize in Physiology for their work on RNAi interference in the nematode worm C. elegans, which they published in 1998.
  • 43. Some Questions to Consider  What is normal and what is a disability or disorder, and who decides?  Are disabilities diseases? Do they need to be cured or prevented?  Does searching for a cure demean the lives of individuals presently affected by disabilities?
  • 44. Ethical Considerations cont…  Who should pay?  Preliminary attempts at gene therapy are exorbitantly expensive. Who will have access to these therapies? Who will pay for their use?  Gene therapy currently cost up to $200,000 per treatment.  Unforeseen consequences Is it possible that eliminating defective genes from our genome may have unforeseen consequences
  • 45.  Religious Objections  Majority of the world believes in some type of higher power.  The majority of religions states that everyone should be happy with what they have.  Do we have the right to play GOD?