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INTRODUCTION	
  
Tissue	
  culture	
  is	
  one	
  of	
  the	
  most	
  widely	
  used	
  biotechnologies	
  in	
  
African	
   agricultural	
   improvement.	
   When	
   coupled	
   with	
   various	
  
therapies	
  it	
  can	
  be	
  used	
  for	
  elimina;on	
  of	
  viruses	
  from	
  plants.	
  
The	
   known	
   therapies	
   include:	
   1.	
   Thermotherapy	
   2.	
  
Chemotherapy	
  and	
  3.	
  Electrotherapy.	
  Thermotherapy	
  combined	
  
with	
  meristem	
  ;p	
  culture	
  has	
  proven	
  to	
  be	
  successful.	
  However,	
  
the	
  rate	
  of	
  success	
  can	
  be	
  improved	
  by	
  combining	
  two	
  or	
  more	
  
different	
  treatments.	
  The	
  Swedish	
  government,	
  through	
  SIDA,	
  is	
  
suppor;ng	
   ;ssue	
   culture	
   and	
   diagnos;cs	
   research	
   of	
   the	
  
following	
   crops:	
   Taro,	
   Yam,	
   Garlic	
   and	
   Passion	
   fruit	
   from	
  
different	
  regions	
  within	
  eastern	
  and	
  central	
  Africa.	
  The	
  aims	
  of	
  
this	
  work	
  are	
  to	
  (1)	
  Iden;fy	
  the	
  viruses	
  present	
  in	
  the	
  plants	
  (2)	
  
Produce	
   clean	
   plan;ng	
   materials	
   through	
   ;ssue	
   culture	
   using	
  
one	
  or	
  more	
  of	
  the	
  above	
  men;oned	
  cleaning	
  methods,	
  (3)	
  pass	
  
clean	
   plantlets	
   to	
   partners	
   for	
   mul;plica;on	
   and	
   subsequent	
  
distribu;on.	
  However,	
  the	
  above	
  cleaning	
  methods	
  can	
  be	
  used	
  
for	
  other	
  clonally	
  propagated	
  crops.	
  
Pictures	
  
DELIVERING	
  SCIENCE	
  AND	
  DEVELOPING	
  CAPACITY	
  
Ø 	
  Virus-­‐free	
  plan;ng	
  materials	
  can	
  be	
  obtained	
  using	
  one	
  or	
  a	
  combina;on	
  of	
  
the	
  known	
  cleaning	
  therapies.	
  	
  	
  
Ø 	
   Famers	
   will	
   have	
   access	
   to	
   disease	
   -­‐free	
   plan;ng	
   materials,	
   leading	
   to	
  
increased	
  crop	
  yields.	
  
Ø 	
  Diagnos;c	
  technologies	
  will	
  be	
  transferred	
  to	
  na;onal	
  as	
  well	
  as	
  regional	
  
partners	
  hence	
  building	
  capacity.	
  	
  
CONCLUSION	
  	
  
The	
  results	
  of	
  this	
  study	
  	
  demonstrate:	
  
Ø 	
  Successful	
  elimina;on	
  of	
  badnavirus	
  from	
  taro	
  using	
  thermotherapy	
  	
  
combined	
  with	
  meristem	
  ;p	
  culture.	
  	
  	
  	
  	
  
Ø 	
  	
  Thermotherapy	
  combined	
  with	
  chemotherapy	
  yielded	
  beRer	
  results	
  hence	
  
the	
  need	
  to	
  combine	
  cleaning	
  therapies	
  for	
  higher	
  success	
  rates.	
  
	
  
	
  
	
  
Dec	
  2012	
  
	
  METHODOLOGY	
  
	
  
	
  
	
  
	
  
	
  
	
  
	
  
	
  
	
  
	
  
	
  
	
  
	
  
	
  
	
  
	
  
	
  
	
  
	
  
	
  
	
  
	
  
	
  
	
  
	
  
Tissue	
  culture	
  and	
  virus	
  indexing	
  for	
  the	
  producFon	
  of	
  clean	
  
planFng	
  materials	
  
P. ASAMI1; C. TOO1; M. MACHARIA1; P. NIYONZIMA2 ; D. BIGIRIMANA3; G. NDARUBAYEMWO3;
D. BEYENE4; J. HARVEY1 and T.A. HOLTON1
1Biosciences eastern and central Africa-International Livestock Research Institute, Nairobi, Kenya (BecA-ILRI);
2Institut des Sciences Agronomiques du Burundi (ISABU); 3University of Burundi, Faculty of Agronomy; 4 Ethiopian Institute of
Agricultural Research (EIAR)
RESULTS	
  (TARO	
  CASE	
  STUDY)	
  
Samples	
  collec;on	
  and	
  ini;a;on	
  in	
  vitro	
  	
  	
  	
  	
  
(before	
  thermotherapy	
  treatment)	
  
Serological	
  test	
  (ELISA)	
  	
  	
  
Molecular	
  diagnos;cs	
  (PCR	
  and	
  RT-­‐PCR)	
  
Thermotherapy	
  treatment	
  of	
  all	
  posi;ves	
  in	
  vitro	
  
plantlets	
  for	
  20	
  days	
  :	
  	
  
§ 	
  	
  daily	
  temperature	
  :	
  38°C	
  
§ 	
  	
  photoperiod:	
  16	
  hours	
  	
  	
  
§ 	
  	
  dark	
  period:	
  8	
  hours	
  at	
  28°C	
  	
  
§ 	
  	
  intensity	
  con;nued	
  light:	
  5000	
  lux	
  
§ 	
  	
  70%	
  rela;ve	
  humidity.	
  
Molecular	
  diagnos;cs	
  (PCR	
  and	
  RT-­‐PCR)	
  a^er	
  
thermotherapy	
  and	
  meristem	
  ;p	
  culture	
  
Sequencing	
  and	
  data	
  analysis	
  
Excising	
  	
  and	
  	
  culturing	
  of	
  meristem	
  
PCR	
  for	
  badna	
  virus	
  using	
  universal	
  	
  
badna	
  primers.	
  Badna	
  amplified:	
  280bp.	
  
	
  	
  	
  M	
  	
  	
  	
  12	
  	
  	
  13	
  	
  	
  	
  	
  14	
  	
  	
  	
  	
  	
  15	
  	
  	
  	
  	
  16	
  	
  	
  	
  	
  	
  17	
  	
  	
  	
  	
  18	
  	
  	
  	
  	
  	
  19	
  	
  	
  	
  	
  	
  W	
  	
  	
  	
  20	
  	
  	
  	
  	
  	
  21	
  	
  	
  	
  22
	
  M	
  	
  	
  	
  	
  	
  	
  12	
  	
  	
  	
  	
  	
  13	
  	
  	
  	
  14	
  	
  	
  	
  	
  	
  	
  	
  	
  15	
  	
  	
  	
  	
  	
  	
  16	
  	
  	
  	
  	
  17	
  	
  	
  	
  	
  18	
  	
  	
  	
  	
  	
  W	
  	
  	
  	
  	
  	
  	
  19	
  	
  	
  	
  	
  	
  	
  	
  20	
  	
  	
  	
  	
  	
  	
  21	
  	
  	
  	
  	
  	
  22
Badna	
   PCR	
   a^er	
   thermotherapy	
   and	
  	
  
meristem	
   ;p	
   culture	
   using	
   universal	
   badna	
  
primers	
  
Virus-­‐free	
  in	
  vitro	
  plantlets	
  
In	
   vitro	
   plantlets	
   a^er	
   combined	
  	
  	
  	
  	
  
thermotherapy	
  and	
  meristem	
  ;p	
  culture	
  	
  	
  
Plant	
  with	
  viral	
  symptoms	
  collected	
  	
  
from	
  a	
  taro-­‐growing	
  field	
  in	
  Burundi.	
  
BEFORE	
  TREATMENT	
   AFTER	
  TREATMENT	
  
§ Badnavirus	
  was	
  detected	
  in	
  diseased	
  plants	
  prior	
  to	
  ;ssue	
  culture.	
  
§ 60	
  in	
  vitro	
  plantlets	
  tested	
  posi;ve	
  for	
  badnavirus:	
  DNA	
  sequencing	
  iden;fied	
  
a	
  new	
  suspected	
  taro	
  virus	
  (Dioscorea	
  bacilliform	
  virus)	
  that	
  has	
  previously	
  been	
  
reported	
  in	
  yam.	
  
	
  
§ Thermotherapy	
   combined	
   with	
   chemotherapy	
   was	
   able	
   to	
   produce	
   clean	
  
plants,	
  confirmed	
  a^er	
  PCR	
  and	
  RT-­‐PCR	
  diagnos;cs.	
  
Unlocking livestock development potential through science, influence and capacity development
ILRI APM, Addis Ababa, 15-17 May 2013

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  • 1. INTRODUCTION   Tissue  culture  is  one  of  the  most  widely  used  biotechnologies  in   African   agricultural   improvement.   When   coupled   with   various   therapies  it  can  be  used  for  elimina;on  of  viruses  from  plants.   The   known   therapies   include:   1.   Thermotherapy   2.   Chemotherapy  and  3.  Electrotherapy.  Thermotherapy  combined   with  meristem  ;p  culture  has  proven  to  be  successful.  However,   the  rate  of  success  can  be  improved  by  combining  two  or  more   different  treatments.  The  Swedish  government,  through  SIDA,  is   suppor;ng   ;ssue   culture   and   diagnos;cs   research   of   the   following   crops:   Taro,   Yam,   Garlic   and   Passion   fruit   from   different  regions  within  eastern  and  central  Africa.  The  aims  of   this  work  are  to  (1)  Iden;fy  the  viruses  present  in  the  plants  (2)   Produce   clean   plan;ng   materials   through   ;ssue   culture   using   one  or  more  of  the  above  men;oned  cleaning  methods,  (3)  pass   clean   plantlets   to   partners   for   mul;plica;on   and   subsequent   distribu;on.  However,  the  above  cleaning  methods  can  be  used   for  other  clonally  propagated  crops.   Pictures   DELIVERING  SCIENCE  AND  DEVELOPING  CAPACITY   Ø   Virus-­‐free  plan;ng  materials  can  be  obtained  using  one  or  a  combina;on  of   the  known  cleaning  therapies.       Ø    Famers   will   have   access   to   disease   -­‐free   plan;ng   materials,   leading   to   increased  crop  yields.   Ø   Diagnos;c  technologies  will  be  transferred  to  na;onal  as  well  as  regional   partners  hence  building  capacity.     CONCLUSION     The  results  of  this  study    demonstrate:   Ø   Successful  elimina;on  of  badnavirus  from  taro  using  thermotherapy     combined  with  meristem  ;p  culture.           Ø     Thermotherapy  combined  with  chemotherapy  yielded  beRer  results  hence   the  need  to  combine  cleaning  therapies  for  higher  success  rates.         Dec  2012    METHODOLOGY                                                     Tissue  culture  and  virus  indexing  for  the  producFon  of  clean   planFng  materials   P. ASAMI1; C. TOO1; M. MACHARIA1; P. NIYONZIMA2 ; D. BIGIRIMANA3; G. NDARUBAYEMWO3; D. BEYENE4; J. HARVEY1 and T.A. HOLTON1 1Biosciences eastern and central Africa-International Livestock Research Institute, Nairobi, Kenya (BecA-ILRI); 2Institut des Sciences Agronomiques du Burundi (ISABU); 3University of Burundi, Faculty of Agronomy; 4 Ethiopian Institute of Agricultural Research (EIAR) RESULTS  (TARO  CASE  STUDY)   Samples  collec;on  and  ini;a;on  in  vitro           (before  thermotherapy  treatment)   Serological  test  (ELISA)       Molecular  diagnos;cs  (PCR  and  RT-­‐PCR)   Thermotherapy  treatment  of  all  posi;ves  in  vitro   plantlets  for  20  days  :     §     daily  temperature  :  38°C   §     photoperiod:  16  hours       §     dark  period:  8  hours  at  28°C     §     intensity  con;nued  light:  5000  lux   §     70%  rela;ve  humidity.   Molecular  diagnos;cs  (PCR  and  RT-­‐PCR)  a^er   thermotherapy  and  meristem  ;p  culture   Sequencing  and  data  analysis   Excising    and    culturing  of  meristem   PCR  for  badna  virus  using  universal     badna  primers.  Badna  amplified:  280bp.        M        12      13          14            15          16            17          18            19            W        20            21        22  M              12            13        14                  15              16          17          18            W              19                20              21            22 Badna   PCR   a^er   thermotherapy   and     meristem   ;p   culture   using   universal   badna   primers   Virus-­‐free  in  vitro  plantlets   In   vitro   plantlets   a^er   combined           thermotherapy  and  meristem  ;p  culture       Plant  with  viral  symptoms  collected     from  a  taro-­‐growing  field  in  Burundi.   BEFORE  TREATMENT   AFTER  TREATMENT   § Badnavirus  was  detected  in  diseased  plants  prior  to  ;ssue  culture.   § 60  in  vitro  plantlets  tested  posi;ve  for  badnavirus:  DNA  sequencing  iden;fied   a  new  suspected  taro  virus  (Dioscorea  bacilliform  virus)  that  has  previously  been   reported  in  yam.     § Thermotherapy   combined   with   chemotherapy   was   able   to   produce   clean   plants,  confirmed  a^er  PCR  and  RT-­‐PCR  diagnos;cs.   Unlocking livestock development potential through science, influence and capacity development ILRI APM, Addis Ababa, 15-17 May 2013