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Genome editing
The regulatory landscape
N Ferry
Department of cell therapy
Hopital Saint Louis, Paris
Eurordis Workshopon genome editing
Paris, Friday 4th November 2016
• Classificationof gene editing
• Orphan similarity
Agenda
Overview of the present regulation
The definition of ATMPs (Advanced Therapy Medicinal
Products) is laid down in Reg 1394/2007 modifying Dir
2001/83
Four Different types of ATMPs:
1. Gene Therapy medicinal products
2. Cell Therapy medicinal products
3. Tissue engineered products
4. Combined ATMPs
Gene therapy medicinal product means a biological medicinal
product which has the following characteristics:
(a)it contains an active substance which containsor consists of
a recombinant nucleic acid used in or administered to human
beings with a view to regulating, repairing, replacing, adding or
deleting a genetic sequence;
(b) its therapeutic, prophylactic or diagnostic effect relates
directly to the recombinant nucleic acid sequence it
contains, or to the product of genetic expression of this
sequence.
Gene therapy medicinal products shall not includevaccines
against infectiousdiseases.
Gene therapy medicinal product
Classification of ATMPs
ATMP classification is a procedure performed by the Committee
for Advanced Therapies
• open to all applicants
• scientific recommendationfrom CAT on the regulatory
classification of their ATMP (non binding)
• 60-day procedure (often shorter)
• publication of summary information on classification
• >150 procedures finalised
• list accessible on EMA web site
How to classify gene editing?
Prom gene pA
Prom gene pA
1. Modificationof the coding sequence: additionor deletion
Initialgenome
Prom gene pA
2. Modificationof non coding sequence: promoter or polyA
Prom gene pA
3. Modificationof regulatory sequences or splice sites
Ex vivo
Gene editing
Therapeutic gene
Therapeutic gene
In vivo
Gene editing
Gene edited cells
Two types of gene editing applications
ex vivo gene editing
The product is the modified
cells
in vivo gene editing
The product is a biologic
YES the product is the
modified cells
The product containsor
consists of a recombinant
nucleic acid
YES
The therapeuticeffect
relates directly to the
recombinantnucleic acid
sequence
YES (coding sequences)/
NO (non coding sequences)
Does gene editing meet the requirement of a
gene therapy product?
Regulation of globin genes
Re-expression of fetal globin after gene editing of the SOX6
regulatory protein
Direct effect of the recombinant nucleotide sequence?
ex vivo gene editing
The product is the modified
cells
in vivo gene editing
The product is a biologic YES YES usually
The product containsor
consists of a recombinant
nucleic acid
YES YES or NO
The therapeuticeffect
relates directly to the
recombinantnucleic acid
sequence
YES (coding sequences)/
NO (non coding sequences)
Does gene editing meet the requirement of a
gene therapy product?
Recombinant DNA (Wikipedia)
• Recombinant DNA (rDNA) molecules are DNA
molecules formed by laboratory methods of
genetic recombination (such as molecular
cloning) to bring together genetic material
from multiple sources, creating sequences
that would not otherwise be found in the
genome.
ZFN and TALEN are proteins acting
directly on the genome
Delivery of proteins can be achieved
with virus like particles without DNA
ex vivo gene editing
The product is the modified
cells
in vivo gene editing
The product is a biologic YES YES usually
The product containsor
consists of a recombinant
nucleic acid
YES YES or NO
The therapeuticeffect
relates directly to the
recombinantnucleic acid
sequence
YES (coding sequences)/
NO (non coding sequences)
NO if no nucleic acid
Does gene editing meet the requirement of a
gene therapy product?
Conclusion (1)
• Gene editing cannot always be classified as
gene therapy medicinal product
• It could also be a biological product which
should comply with different guidelines
• Classificationof gene editing
• Orphan similarity
Agenda
The present regulation
According to the present regulation:
• Two related cell therapy products
• Or two polynucleotide substances when the
differences are in the vector or transfer system
Should be considered as orphan similar
Gene therapy results in addition of a therapeutic sequence:
Gene edited cells vs genetically transduced cells
CD 34+ cell
transduced with a
retroviral vector
expressing ADA
protein
CD 34+ cell
transduced with
a lentivirall
vector expressing
ADA protein
CD 34+ cell with
ADA gene edited
expressing ADA
protein
The therapeutic nucleic acid sequence is the same
Conclusion (2)
Orphan similarity regulation should be modified
to take gene editing in consideration
EMA issued a Consultationdocument (until
November 4, 2016):
CONCEPT OF ‘SIMILAR MEDICINAL PRODUCT’ IN THE
CONTEXT OF THE ORPHAN LEGISLATION: ADAPTATION
TO TECHNICAL PROGRESS
Conclusion (2)
An active substance is not considered similar in cases of:
(aa) ATMPs for which principal molecular structural features cannot be fully
defined and the similarity between two active substances needs to be
assessedon the basis of biological and functional characteristics.
(bb) Two gene therapy medicinal products when there are differences in the
therapeutic sequence, viral vector, transfer system or regulatory sequences
that significantly affect the biological characteristics and/or activity relevant
for the intended therapeutic effect of the product. Minor differences in the
therapeutic sequence without a significant impact on the intended
therapeutic effect are not sufficient to support the claim that two gene
therapy medicinal products are non-similar.
(cc) Genetically modified cells. The considerations under (aa) and (bb) apply.
Thank you

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3.nf

  • 1. Genome editing The regulatory landscape N Ferry Department of cell therapy Hopital Saint Louis, Paris Eurordis Workshopon genome editing Paris, Friday 4th November 2016
  • 2. • Classificationof gene editing • Orphan similarity Agenda
  • 3. Overview of the present regulation The definition of ATMPs (Advanced Therapy Medicinal Products) is laid down in Reg 1394/2007 modifying Dir 2001/83 Four Different types of ATMPs: 1. Gene Therapy medicinal products 2. Cell Therapy medicinal products 3. Tissue engineered products 4. Combined ATMPs
  • 4. Gene therapy medicinal product means a biological medicinal product which has the following characteristics: (a)it contains an active substance which containsor consists of a recombinant nucleic acid used in or administered to human beings with a view to regulating, repairing, replacing, adding or deleting a genetic sequence; (b) its therapeutic, prophylactic or diagnostic effect relates directly to the recombinant nucleic acid sequence it contains, or to the product of genetic expression of this sequence. Gene therapy medicinal products shall not includevaccines against infectiousdiseases. Gene therapy medicinal product
  • 5. Classification of ATMPs ATMP classification is a procedure performed by the Committee for Advanced Therapies • open to all applicants • scientific recommendationfrom CAT on the regulatory classification of their ATMP (non binding) • 60-day procedure (often shorter) • publication of summary information on classification • >150 procedures finalised • list accessible on EMA web site
  • 6. How to classify gene editing? Prom gene pA Prom gene pA 1. Modificationof the coding sequence: additionor deletion Initialgenome Prom gene pA 2. Modificationof non coding sequence: promoter or polyA Prom gene pA 3. Modificationof regulatory sequences or splice sites
  • 7. Ex vivo Gene editing Therapeutic gene Therapeutic gene In vivo Gene editing Gene edited cells Two types of gene editing applications
  • 8. ex vivo gene editing The product is the modified cells in vivo gene editing The product is a biologic YES the product is the modified cells The product containsor consists of a recombinant nucleic acid YES The therapeuticeffect relates directly to the recombinantnucleic acid sequence YES (coding sequences)/ NO (non coding sequences) Does gene editing meet the requirement of a gene therapy product?
  • 10. Re-expression of fetal globin after gene editing of the SOX6 regulatory protein Direct effect of the recombinant nucleotide sequence?
  • 11. ex vivo gene editing The product is the modified cells in vivo gene editing The product is a biologic YES YES usually The product containsor consists of a recombinant nucleic acid YES YES or NO The therapeuticeffect relates directly to the recombinantnucleic acid sequence YES (coding sequences)/ NO (non coding sequences) Does gene editing meet the requirement of a gene therapy product?
  • 12. Recombinant DNA (Wikipedia) • Recombinant DNA (rDNA) molecules are DNA molecules formed by laboratory methods of genetic recombination (such as molecular cloning) to bring together genetic material from multiple sources, creating sequences that would not otherwise be found in the genome.
  • 13. ZFN and TALEN are proteins acting directly on the genome
  • 14. Delivery of proteins can be achieved with virus like particles without DNA
  • 15. ex vivo gene editing The product is the modified cells in vivo gene editing The product is a biologic YES YES usually The product containsor consists of a recombinant nucleic acid YES YES or NO The therapeuticeffect relates directly to the recombinantnucleic acid sequence YES (coding sequences)/ NO (non coding sequences) NO if no nucleic acid Does gene editing meet the requirement of a gene therapy product?
  • 16. Conclusion (1) • Gene editing cannot always be classified as gene therapy medicinal product • It could also be a biological product which should comply with different guidelines
  • 17. • Classificationof gene editing • Orphan similarity Agenda
  • 19.
  • 20. According to the present regulation: • Two related cell therapy products • Or two polynucleotide substances when the differences are in the vector or transfer system Should be considered as orphan similar
  • 21. Gene therapy results in addition of a therapeutic sequence:
  • 22. Gene edited cells vs genetically transduced cells CD 34+ cell transduced with a retroviral vector expressing ADA protein CD 34+ cell transduced with a lentivirall vector expressing ADA protein CD 34+ cell with ADA gene edited expressing ADA protein The therapeutic nucleic acid sequence is the same
  • 23. Conclusion (2) Orphan similarity regulation should be modified to take gene editing in consideration EMA issued a Consultationdocument (until November 4, 2016): CONCEPT OF ‘SIMILAR MEDICINAL PRODUCT’ IN THE CONTEXT OF THE ORPHAN LEGISLATION: ADAPTATION TO TECHNICAL PROGRESS
  • 24. Conclusion (2) An active substance is not considered similar in cases of: (aa) ATMPs for which principal molecular structural features cannot be fully defined and the similarity between two active substances needs to be assessedon the basis of biological and functional characteristics. (bb) Two gene therapy medicinal products when there are differences in the therapeutic sequence, viral vector, transfer system or regulatory sequences that significantly affect the biological characteristics and/or activity relevant for the intended therapeutic effect of the product. Minor differences in the therapeutic sequence without a significant impact on the intended therapeutic effect are not sufficient to support the claim that two gene therapy medicinal products are non-similar. (cc) Genetically modified cells. The considerations under (aa) and (bb) apply.