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PHARMACO GENETICS
Dr. Anu Chandran
Department of pharmacology
Trivandrum medical college
Personalized Medicine
Personalized Medicine
 We are all different..
 This is why personalized medicine is important to everyone.
 Why does someone need twice the standard dose to be effective?
 Why does this drug work for you but not me?
 Why do I have side-effects and you don’t?
 Why do some people get cancer and others dont
Is Medicine a Science or an Art?
If it were not for the great variability among individuals,
medicine might well be a science, not an art.
Sir William Osler, Physician 1892
Father of modern medicine
The Goal of Personalized Medicine
The Right Dose of
The Right Drug for
The Right Indication for
The Right Patient at
The Right Time.
Pharmacogenetics & Pharmacogenomics
 Pharmacogenetics is the study of the genetic basis for variation in drug
response.
 Pharmacogenetics: The role of genetics in drug responses.
 F. Vogel. 1959
 Pharmacogenomics: The science that allows us to predict a response to drugs
based on an individuals genetic makeup
 Felix Frueh, Associate Director of Genomics, FDA
 Pharmacogenomics 
 employs tools for surveying the entire genome &
 Assess multigenic determinants of drug response.
Pharmacogenetics
Due to genetic polymorphism
Types of genetic polymorphism
Single nucleotide polymorphism (SNP) 
more common, less serious
Insertion/ deletions (indels)  less
common, serious
Examples of Genetic Polymorphisms Influencing Drug Response
GENE PRODUCT
(GENE) DRUGSRESPONSES AFFECTED
Drug Metabolism and Transport
CYP2C9 Tolbutamide, warfarin,phenytoin, Anticoagulant effect of warfarin
nonsteroidal anti-inflammatory
CYP2C19 Mephenytoin, omeprazole, voriconazole, Peptic ulcer response to omeprazole;
cardiovascular
hexobarbital, mephobarbital, propranolol, events after clopidogrel
proguanil, phenytoin, clopidogrel
CYP2D6 blockers, antidepressants, anti-psychotics, Tardive dyskinesia from antipsychotics,
narcotic
codeine, debrisoquine, atomoxetine, side effects, codeine efficacy, imipramine dose
dextromethorphan, encainide, flecainide, requirement, blocker effect; breast cancer
fluoxetine, guanoxan, N-propylajmaline, recurrence after tamoxifen
perhexiline, phenacetin, phenformin,
propafenone, sparteine, tamoxifen
CYP3A4/3A5/3A7 Macrolides, cyclosporine, tacrolimus, Efficacy of immunosuppressive
effects of
Ca2+ channel blockers, midazolam, tacrolimus
terfenadine, lidocaine, dapsone, quinidine,
triazolam, etoposide, teniposide, lovastatin,
alfentanil, tamoxifen, steroids
Single Nucleotide Polymorphism(SNP)
Pharmacokinetic
Variations
( involving drug
metabolism )
Pharmacodynamic
Variations
(involving drug-receptor
interactions)
Phase I Phase II
Consequences of polymorphism
Pharmacokinetic Variations
Succinyl choline
PsuedocholinesteraseAtypical Psuedocholinesterase
Pharmacokinetic Variations
Atypical pseudocholinesterase
Slow hydrolysis of Succinyl choline 
prolonged apnea
Pharmacokinetic Variations
Isoniazid
N Acetyl
transferase
Fast Acetylators
Slow Acetylators
Pharmacokinetic Variations
Acetylation
Polymorphism of N-acetyl transferase
Acetylation of Isoniazid
Fast acetylators slow acetylators
hepatotoxicity peripheral neuropathy
Pharmacodynamic variations
Halothane induced hyperthermia
Abnormal rynodine receptor on
sarcoplasmic reticulum
Genetic polymorphism
Excessive release of calcium
Other examples
 Precipitation of PORPHYRIA by
barbiturates
Haemolysis due to G6PD
deficiency.
Insulin resistance due to receptor
mutations
IDIOSYNCRACY
 Genetically mediated abnormal reactivity to a
chemical in a small minority of individuals for
which no definite genotype has been
described.
 Cause unknown.
 Not found in majority of population.
 Aplastic aneamia due to chloramphenicol
Applications of pharmaco genetic
knowledge
Personalise medicine
1. To enhance effectiveness
2. Decrease ADR
3. To make clinical trials faster &
cost effective
LIMITATIONS
 Expensive and time consuming.
 Influence of environmental factors
 Ethical issues
Dr. Anu Chandran
TERMS
Greek “teras” meaning "malformation”
 Teratogen: Any chemical, substance, or
exposure given to the pregnant mother that
may cause birth defects to the developing
fetus.
 Teratogenesis: The formation of an abnormal
embryo.
Teratogenicity
It refers to capacity of a exogenous
agents to cause foetal abnormalities
when administered to the mother at
any stage of pregnancy.
The placenta - not strictly barrier -
drugs can cross  effect n fetus.
COMMON TERATOGENS
Effects of Teratogens on the
Fetus
Spontaneous abortion
Malformations (major or minor)
Intrauterine growth retardation
Mental retardation
Carcinogenesis
Mutagenesis (causing genetic mutation)
Factors That Determine the Effects
of Teratogens
Dose reaching fetus
Time of pregnancy during which
drug exposure occurs
Duration of exposure
Effect of drugs on fetus during
pregnancy
 Fertilization & implantation
conception to 17 days- Failure of pregnancy
 Organogenesis
18 to 55 days- Congenital malformations
 Growth & development
56 days onwards-Developmental & functional abnormalities.
Most
vulnerable
period
THALIDOMIDE
PHOCOMELIA : 'seal limbs'
Consists of an absence of development
of the long bones of the arms and legs
 Tetracyclines  staining of teeth
 Androgens  musculaniasation of female
fetus
 Lithium  Ebstein’s anomaly
 Phenytoin  Fetal Hydantoin syndrome
 Alcohol  Fetal Alchohol syndrome
 Valproate  Neural tube defects
PHENYTOIN
Cleft lip/palate
Microcephaly
Mental retardation
VALPROATE- NEURAL TUBE DEFECTS
ISOTRETINOIN
Mental retardation and
learning disabilities
Eye & ear deformities
Cleft lip, cleft palate & other
facial abnormalities
Heart defects
Microcephaly & Hydrocephaly
FETAL ALCOHOL SYNDROME
FETAL WARFARIN SYNDROME
• Saddle nose
• Retarded growth
• Defects of limbs,
eyes and central
nervous system
Tetracycline- Teeth and bone damage
Yellow staining
Enamel hypoplasia
Caries and pigmentation
 of permanent teeth
United States FDA
Pharmaceutical Pregnancy Categories
A Controlled human studies show no risk Inj MgSO4
Thyroxine
B
No confirmatory evidence of risk in
humans
Penicillin
Paracetamol
C Risk cannot be ruled out
Morphine
codiene
D Positive evidence of risk
Phenytoin
valproate
X Contraindicated in pregnancy isotretinoin
Counseling women about teratogenic risk
The baseline teratogenic risk in
pregnancy (ie,even in the absence of
any known teratogenic exposure)
about 3%.
It is also critical to address the
maternal-fetal risks of the untreated
condition if a medication is avoided.
Summary
 Pharmacogenetics is the study of variation in drug response due to genetic
variation
 Genetic variations can lead to decreased drug response or enhanced toxicity
 So study of Pharmacogenetics is important
 Teratogenicity- Fetal abnormalities caused by exogenous agents
 Most vulnerable period- organogenesis
 Patient education and Proper selection of drugs
Personalized Medicine
(Individualized therapy)
Science concerned with providing medical care
based the genomic and molecular profile of the
individual patient
Patient requires Treatment
Examination by the Physician
Genomic testing Traditional
investigations
EXPERT SYSTEM
Decision making by Physician, assisted by an Expert System
(interactive interpretation)
Prescribes individualized drug treatment
Here is my sequence
Doctors will be able to select the best drug to treat the disease and the appropriate
dose based on knowledge of patients specific genetic makeup!
Is personalized medicine
finally arriving?
Economic impact on patients…
Genotyping
cost
Treatment failure
cost
Pharmacogenetics

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Pharmacogenetics

  • 1. PHARMACO GENETICS Dr. Anu Chandran Department of pharmacology Trivandrum medical college
  • 3. Personalized Medicine  We are all different..  This is why personalized medicine is important to everyone.  Why does someone need twice the standard dose to be effective?  Why does this drug work for you but not me?  Why do I have side-effects and you don’t?  Why do some people get cancer and others dont
  • 4. Is Medicine a Science or an Art? If it were not for the great variability among individuals, medicine might well be a science, not an art. Sir William Osler, Physician 1892 Father of modern medicine
  • 5. The Goal of Personalized Medicine The Right Dose of The Right Drug for The Right Indication for The Right Patient at The Right Time.
  • 6. Pharmacogenetics & Pharmacogenomics  Pharmacogenetics is the study of the genetic basis for variation in drug response.  Pharmacogenetics: The role of genetics in drug responses.  F. Vogel. 1959  Pharmacogenomics: The science that allows us to predict a response to drugs based on an individuals genetic makeup  Felix Frueh, Associate Director of Genomics, FDA  Pharmacogenomics   employs tools for surveying the entire genome &  Assess multigenic determinants of drug response.
  • 7. Pharmacogenetics Due to genetic polymorphism Types of genetic polymorphism Single nucleotide polymorphism (SNP)  more common, less serious Insertion/ deletions (indels)  less common, serious
  • 8. Examples of Genetic Polymorphisms Influencing Drug Response GENE PRODUCT (GENE) DRUGSRESPONSES AFFECTED Drug Metabolism and Transport CYP2C9 Tolbutamide, warfarin,phenytoin, Anticoagulant effect of warfarin nonsteroidal anti-inflammatory CYP2C19 Mephenytoin, omeprazole, voriconazole, Peptic ulcer response to omeprazole; cardiovascular hexobarbital, mephobarbital, propranolol, events after clopidogrel proguanil, phenytoin, clopidogrel CYP2D6 blockers, antidepressants, anti-psychotics, Tardive dyskinesia from antipsychotics, narcotic codeine, debrisoquine, atomoxetine, side effects, codeine efficacy, imipramine dose dextromethorphan, encainide, flecainide, requirement, blocker effect; breast cancer fluoxetine, guanoxan, N-propylajmaline, recurrence after tamoxifen perhexiline, phenacetin, phenformin, propafenone, sparteine, tamoxifen CYP3A4/3A5/3A7 Macrolides, cyclosporine, tacrolimus, Efficacy of immunosuppressive effects of Ca2+ channel blockers, midazolam, tacrolimus terfenadine, lidocaine, dapsone, quinidine, triazolam, etoposide, teniposide, lovastatin, alfentanil, tamoxifen, steroids
  • 10. Pharmacokinetic Variations ( involving drug metabolism ) Pharmacodynamic Variations (involving drug-receptor interactions) Phase I Phase II Consequences of polymorphism
  • 12. Pharmacokinetic Variations Atypical pseudocholinesterase Slow hydrolysis of Succinyl choline  prolonged apnea
  • 14. Pharmacokinetic Variations Acetylation Polymorphism of N-acetyl transferase Acetylation of Isoniazid Fast acetylators slow acetylators hepatotoxicity peripheral neuropathy
  • 15. Pharmacodynamic variations Halothane induced hyperthermia Abnormal rynodine receptor on sarcoplasmic reticulum Genetic polymorphism Excessive release of calcium
  • 16. Other examples  Precipitation of PORPHYRIA by barbiturates Haemolysis due to G6PD deficiency. Insulin resistance due to receptor mutations
  • 17. IDIOSYNCRACY  Genetically mediated abnormal reactivity to a chemical in a small minority of individuals for which no definite genotype has been described.  Cause unknown.  Not found in majority of population.  Aplastic aneamia due to chloramphenicol
  • 18. Applications of pharmaco genetic knowledge Personalise medicine 1. To enhance effectiveness 2. Decrease ADR 3. To make clinical trials faster & cost effective
  • 19. LIMITATIONS  Expensive and time consuming.  Influence of environmental factors  Ethical issues
  • 21. TERMS Greek “teras” meaning "malformation”  Teratogen: Any chemical, substance, or exposure given to the pregnant mother that may cause birth defects to the developing fetus.  Teratogenesis: The formation of an abnormal embryo.
  • 22. Teratogenicity It refers to capacity of a exogenous agents to cause foetal abnormalities when administered to the mother at any stage of pregnancy. The placenta - not strictly barrier - drugs can cross  effect n fetus.
  • 24. Effects of Teratogens on the Fetus Spontaneous abortion Malformations (major or minor) Intrauterine growth retardation Mental retardation Carcinogenesis Mutagenesis (causing genetic mutation)
  • 25. Factors That Determine the Effects of Teratogens Dose reaching fetus Time of pregnancy during which drug exposure occurs Duration of exposure
  • 26. Effect of drugs on fetus during pregnancy  Fertilization & implantation conception to 17 days- Failure of pregnancy  Organogenesis 18 to 55 days- Congenital malformations  Growth & development 56 days onwards-Developmental & functional abnormalities. Most vulnerable period
  • 27. THALIDOMIDE PHOCOMELIA : 'seal limbs' Consists of an absence of development of the long bones of the arms and legs
  • 28.  Tetracyclines  staining of teeth  Androgens  musculaniasation of female fetus  Lithium  Ebstein’s anomaly  Phenytoin  Fetal Hydantoin syndrome  Alcohol  Fetal Alchohol syndrome  Valproate  Neural tube defects
  • 31. ISOTRETINOIN Mental retardation and learning disabilities Eye & ear deformities Cleft lip, cleft palate & other facial abnormalities Heart defects Microcephaly & Hydrocephaly
  • 33. FETAL WARFARIN SYNDROME • Saddle nose • Retarded growth • Defects of limbs, eyes and central nervous system
  • 34. Tetracycline- Teeth and bone damage Yellow staining Enamel hypoplasia Caries and pigmentation  of permanent teeth
  • 35. United States FDA Pharmaceutical Pregnancy Categories A Controlled human studies show no risk Inj MgSO4 Thyroxine B No confirmatory evidence of risk in humans Penicillin Paracetamol C Risk cannot be ruled out Morphine codiene D Positive evidence of risk Phenytoin valproate X Contraindicated in pregnancy isotretinoin
  • 36. Counseling women about teratogenic risk The baseline teratogenic risk in pregnancy (ie,even in the absence of any known teratogenic exposure) about 3%. It is also critical to address the maternal-fetal risks of the untreated condition if a medication is avoided.
  • 37. Summary  Pharmacogenetics is the study of variation in drug response due to genetic variation  Genetic variations can lead to decreased drug response or enhanced toxicity  So study of Pharmacogenetics is important  Teratogenicity- Fetal abnormalities caused by exogenous agents  Most vulnerable period- organogenesis  Patient education and Proper selection of drugs
  • 38. Personalized Medicine (Individualized therapy) Science concerned with providing medical care based the genomic and molecular profile of the individual patient
  • 39. Patient requires Treatment Examination by the Physician Genomic testing Traditional investigations EXPERT SYSTEM Decision making by Physician, assisted by an Expert System (interactive interpretation) Prescribes individualized drug treatment
  • 40. Here is my sequence Doctors will be able to select the best drug to treat the disease and the appropriate dose based on knowledge of patients specific genetic makeup!
  • 42. Economic impact on patients… Genotyping cost Treatment failure cost