Discussing EBI's role within barcoding collection, and its submission services.

1. Core European (& Australian) barcoding data services
Guy Cochrane, EMBL-EBI
EBI is an Outstation of the European Molecular Biology Laboratory.

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3. EBI’s role
• Broader dissemination of barcoding data as part of
INSDC
• Development of data structures
• New INSDC fields
• Minimal reporting standards – the CBoL Data Standard
• Submission services
• Interactive tools
• BOLD-EBI pipeline
• Repositories for of reference datasets
• Raw data
• Annotated sequence
• Data access tools
• Environmental occurrence data
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4. Development of specific data structures
under INSDC
• /specimen_voucher="[<institution-code>:[<collection-code>:]]<specimen_id>“
• /culture_collection="<institution-code>:[<collection-code>:]<culture_id>"
• /bio_material="[ <institution-code>:[<collection-code>:]]<material_id>”
eg. /culture_collection=“ CCAP : RAC : 923/12.3 ”
eg. /specimen_voucher=“ UAM : Mamm : 97402 "
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5. CBoL BARCODE data standard
• Trace information
• Annotated sequence • BARCODE keyword
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6. Interactive submissions
Species B
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7. Interactive and REST retrieval
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8. Interactive and REST retrieval
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9. Interactive and REST retrieval
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10. Interactive and REST retrieval
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11. Environmental occurrence data
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12. EBI’s further roles
• Discovery of barcoding loci
• Development of sequencing data
processing, compression and assembly technology
• Development of integrative technologies with collections
• Integration with taxonomic databases
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13. EBI services as infrastructure
• Programmatic focus for core services, notably sequence
data repositories
• Leverage for European barcoding activities through
ELIXIR, LIFEWATCH
• EBI sequence data repositories at centre of European barcoding
services and utilities
• Leverage for Australian Barcoding through EMBL
Australia
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14. People and funding
ENA Team
Clara Amid, Lawrence Bower, Ana Cerdeño-Tárraga, Ying Cheng, Iain
Cleland, Richard Gibson, Neil Goodgame, Mikyung Jang, Rasko Leinonen, Xin
Liu, Arnaud Oisel, Nima Pakseresht, Sheila Plaister, Rajesh
Radhakrishnan, Kethi Reddy, Stephane Riviere, Marc Rossello, Petra Ten
Hoopen, Dmitriy Smirnov, Vadim Zalunin, Guy Cochrane
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