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Zebra-fish
Natural Habitats, Animal Behaviour and
        Ecological importance.




        Debtanu Chakraborty
Introduction:
Zebrafish (Danio rerio) is increasingly used as a model organism in research
worldwide. One can enlist ‘n’ number of biological disciplines in which this small
creature finds acceptance. The initiators of using Zebrafish were Creaser(1934),
Streisinger(1981) and Kimmel(1996). However, we find that its ecological
parameters too play a great part in making it a preferred choice over other model
organisms. We quickly look at its advantage as a model organism.

In general:
1) Cost effective:
Its small, robust and cheap and so a large number of fish can be kept in the
laboratory. Food involves aquatic planktons that can be easily reared in Lab. It has
a small spawning time (2-3days) and releases hundreds of eggs at the spawning
site. Also interesting to note is that as there is very less Mate Choice, Sexual
Dimorphism is very limited and thus the effect of sex-specific hormones likes
Testosterone or Estrogen on normal body function is eliminated to a large extent.

In Bio-medicine:
2) Place in taxa:
It is a vertebrate, so closer to humans than insects like Drosophila. Yet, epigenetic
regulation is simpler and easier to determine than in higher organism like mice
and rats. With its acceptance worldwide, its genetic sequence has been traced too
at the Sanger institute of Cambridge, U.K. Thus, it is increasingly being used to
model human diseases and screen therapeutic drugs.

In Developmental Biology and Genetics:
3) External Fertilization and Rapid Development:
Short Generation time (3-4 months), make it suitable for selection experiments.
Zebrafish eggs are large relative to other fish, (0.7 mm in diameter at fertilization)
and optically transparent, the yolk being sequestered into a separate cell as in
meroblastic cleavage. Furthermore, fertilization is external so live embryos are
accessible to manipulation and can be monitored through all developmental
stages under a dissecting microscope.
Development is rapid, with precursors to all major organs developing within 36
hours with food seeking and active avoidance behaviour observed within five days
post fertilization, i.e. 2-3 days after hatching (both the findings reported by
Kimmel et al., 1995).

In Neuroscience and Cognition:
4)Kimmel et al published details of Cell differentiation and Neural Development in
Zebrafish. Also, they roam in groups and like all social animals, exhibit mating
rituals, aggression, dominance in hierarchy and related behviours which hint at
their developed learning skills and cognitive abilities. They have been studied
immensely in the last two decades. Thus, they are a great model in Neural
Sciences as well.




Scope of this document:
We discuss the following characteristics of the Zebrafish:

1) Their schooling behavior especially:
  *No of fish per school
  *Natural Habitats and normal group size
  *Determination of Dominance and Hierarchy

2) Their individual behavior especially:

  *Mating behaviour
  *Male Male interaction and Aggression
  *Female Female interaction
  *Male Female sex markers
Schooling (or Shoaling)
Schooling is a tendency generally observed in predator and preys. Prey species
encourage school formation to save themselves from predation. They travel in
hordes and can give solitary predators a run for their life. However, on watching
closely, we will see that their herd shape is rhomboidal. Note that in these figures,
the ovals are individuals, the dominant ones at top and the arrows correspond to
direction of movement within group.




Some predator species too prefer to live in groups and attack and bring down a
bigger or stronger prey. However, the shape of the predator group is highly
different. This is because the prey wants to minimize its chances of encounter
with the predator while the predator wants the opposite.
Thus, area to perimeter ratio will be higher in prey and lower in predators.

However, the shape of a Zebrafish school is entirely different.




This is because although it is both a predator and prey. It sticks together to ward
off bigger fishes but is also competitive in getting access to nutrition sources.
(Discussion needed).

Shoaling behaviour is proved to be innate in zebrafish.(Engeszer et al, 2007b)
(Kerr, 1963) showed that this behavior commences soon after hatching and little
ones form shoals as soon as removed from isolation .
McCann and Matthews(1974) showed that fishes grown in isolation could not
discriminate between conspecifics and other species suggesting that recognition
is learned in the organism.
Engeszer,Ryan and Parichy (2004) also showed that preferences for different
intraspecific phenotypes are also learned.
(Rosenthal and Ryan ,2005) demonstrated that stripes are a key shoaling cue.
Zebrafish have also been known to use olfactory cues in both species and kin
recognition (Gerlach & Lysiak, 2006).
(Grant & Kramer, 1992; Gerlach, 2006; Spence & Smith, 2006).showed that
Individual recognition may play a role in zebrafish since the species is known to
establish dominance hierarchies.
Group Size
The number of fish per school is not at all fixed. In lab cultures, there is no
presence of a distinguished shoal if the fish density is high in aquarium. If it is low,
There will be one primary shoal in the whole aquarium. In the nature, there can
be numerous shoals of numerous sizes depending on natural conditions. These
conditions are determined by experiments.

Shoal size and activity level are important parameters factoring shoaling decisions
in zebra-fish.
(Pritchard et al,2001) showed an individual preferred to be with the larger shoal
and during tough compromising environmental conditions like lower
temperature, the choice shifted to the most active shoal, regardless of the size.
(Rhul and McRobert, 2005) also designed and carried out experiments to
correlate sex with shoaling preferences. Males preferred to be in the group with
the most females but females preferred the group with most members regardless
of the sex ratio.
(Krause et al.,1999) found that fishes could judge the nutrition levels within their
species and preferred to shoal with the well-fed ones. It was also shown that such
fishes subsequently enjoyed better foraging success.
Gerlach et al. showed that the inter-individual distance between two fishes was a
function of their phenotypical relatedness; The more the related, the lesser the
distance. This also hints at the cognitive abilities of the zebra-fish.
.


Dominance and Hierarchy
Females and Males both deploy tactics to dominate over each other and form a
social hierarchy. Display of might involves chasing the competitor and often on
serious cases, biting.
Aggression is displayed by both the fishes aligning head to tail and opening of fins
while moving upwards in a helical motion. (R.Spence was the first to observe).
(Larson, et al., 2006) were successful in showing that aggression is decreased
following formation of a dominion order. They also showed that the Dominant
fish in a pair is darker and utilizes the whole aquarium while the sub-ordinate is
pale and restricted to a small area.
Once established, Dominance ranks remain fairly the same with time, notably in
experiments lasting 5 days. (Grant & Kramer, 1992; Spence and Smth,2005).
G.Gerlach was instrumental in showing that the same rank was established
between males after they were segregated for 4 days and then re-united.
(Grant and Krammer ,1992) demonstrated that Sex is not a factor in determining
the hierarchy in the group.
It has been demonstrated that group formation is a function of food-area density
and food/individual density.


Mating Behaviour
The mating behaviour of Zebrafish is very distinct and well-established.(Breder
and Rosen,1966) showed that photo-periodism or the amount of light and
darkness influences egg laying in zebrafish. Males court females by chasing them
often nudging her flanks with his snout and attempting to lead her to a spawning
site (where egg-laying is preferred). The male fish displays courtship behaviour by
swimming around or in front of the female in proper circles or double circles.
Dis-interest on the part of the female is answered by the male shuttling between
the site of egg-laying and the female.
On passing the spawning site, the males align genital pore with the female and
oscillate with drastic frequencies to induce ovi-position. 5-10 eggs are laid at
every such site. The exercise can last upto an hour although the intensity is
decreased after the first 30 minutes. (reported by Darrow & Harris, 2004).
(Spence et al, 2007b) reported similar behaviour In Wild varieties although the
latter are known to use the entire column (Surface to Water Bed; height).Also, 3
to 7 fishes are involved in the mating ritual.
Zebrafish follows the same mating behaviour pattern with the other fishes of the
Cyprinid order. They spawn in unison and scatter their egg preferably on surfaces
where the eggs will have lower risk of predation.(Spence and Smith, 2005) were
the first to report this behaviour.
In large groups, males chase females. However, in low density, males confine their
movement to a territory central to a spawning site and a few body-length of
theirs in diameter. They chase away other males when they approach.


Males and Females upon introduction to the same sex establish hierarchy as
described before.
Sex markers
Sexually mature females are usually rounder-bellied, slightly less colourful and a
little larger than males. The males are torpedo shaped and shorter. They have
gold stripes between the blue stripes; females have silver stripes instead of gold
The differences are especially clear when the fish are in spawning condition as the
males intensify in colour and the females fill with eggs.(www.fishbase.org,
www.wikipedia.org )




More Information and References:
1)www.sanger.ac.uk

2) zfin.org

3) CREASER, C. W. (1934). The technique of handling the zebrafish (Brachydanio rerio)
for the production of eggs which are favourable for embryological research and
are available at any specified time throughout the year. Copeia 1934, 159-161.

4) STREISINGER, G., WALKER, C., DOWER, N., KNAUBER, D. & SINGER, F. (1981).
Production of clones of homozygous diploid zebra fish (Brachydanio rerio).
Nature 291, 293-296.

5) KIMMEL, C. B., BALLARD, W. W., KIMMEL, S. R., ULLMANN, B & SCHILLING, T. F.
(1995). Stages of embryonic development of the zebrafish. Developmental
Dynamics 203, 253-310.

6) ROWENA SPENCE1*, GABRIELE GERLACH2, CHRISTIAN LAWRENCE3 AND CARL SMITH               The
behaviour and ecology of the zebrafish, Danio rerio.

7) ENGESZER, R. E., ALBERICI DA BARBIANO, L., RYAN, M. J. & PARICHY, D. M. (2007b).
Timing and plasticity of shoaling behaviour in the zebrafish, Danio rerio. Animal
Behaviour (in press).
8) KERR, J. P. (1963). Grouping behaviour of the zebrafish as influenced by social
isolation. American Zoologist 2, 532-533.

9) MCCANN, L. I. & MATTHEWS, J. J. (1974). The effects of lifelong isolation on species
identification in zebra fish (Brachydanio rerio). Developmental Psychobiology 7,
159-163.

10) MCCANN, L. I. & CARLSON, C. C. (1982). Effect of cross-rearing on species
identification in zebra fish and pearl danios. Developmental Psychobiology 15, 71-
74.

11) ENGESZER, R. E., ALBERICI DA BARBIANO, L., RYAN, M. J. & PARICHY, D. M. (2007b).
Timing and plasticity of shoaling behaviour in the zebrafish, Danio rerio. Animal
Behaviour (in press).

12) ROSENTHAL, G. G. & RYAN, M. J. (2005). Assortative preferences for stripes in
danios. Animal Behaviour 70, 1063-1066.


13) GERLACH G.& LYSIAK, N. (2006). Kin recognition and inbreeding avoidance in
zebrafish, Danio rerio, is based on phenotype matching. Animal Behaviour 71,
1371-1377.

14) GRANT, J. W. A. & KRAMER, D. L. (1992). Temporal clumping of food arrival reduces
its monopolization and defense by zebrafish, Brachydanio rerio. Animal
Behaviour 44, 101-110.

15) GERLACH, G. (2006). Pheromonal regulation of reproductive success in female
zebrafish: female suppression and male enhancement. Animal Behaviour 72,
1119-1124.

16) PRITCHARD, V. L., LAWRENCE, J., BUTLIN, R. K. & KRAUSE, J. (2001). Shoal choice in
zebrafish, Danio rerio: the influence of shoal size and activity. Animal Behaviour
62, 1085-1088.

17) RHUL, N. & MCROBERT, S. P. (2005). The effect of sex and shoal size on shoaling
behaviour in Danio rerio. Journal of Fish Biology 67, 1318-1326.

18) KRAUSE, J., HARTMANN, N. & PRITCHARD, V. L. (1999). The influence of nutritional
state on shoal choice in zebrafish, Danio rerio. Animal Behaviour 57, 771-775.

19) LARSON, E. T., O’MALLEY, D. M. & MELLONI JR, R. H. (2006). Aggression and
vasotocin are associated with dominant-subordinate relationships in zebrafish.
Behavioural Brain Research 167, 94-102.

20) GRANT, J. W. A. & KRAMER, D. L. (1992). Temporal clumping of food arrival reduces
its monopolization and defense by zebrafish, Brachydanio rerio. Animal
Behaviour 44, 101-110.

21) BREDER, C. M. & ROSEN, D. E. (1966). Modes of reproduction in fishes. New York,
Natural History Press.

22) DARROW, K. O. & HARRIS, W. A. (2004). Characterisation and development of
courtship in zebrafish, Danio rerio. Zebrafish 1, 40-45.

23) SPENCE, R. & SMITH, C. (2005). Male territoriality mediates density and sex ratio
effects on oviposition in the zebrafish (Danio rerio). Animal Behaviour 69, 1317-
1323.

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Zebra fish

  • 1. Zebra-fish Natural Habitats, Animal Behaviour and Ecological importance. Debtanu Chakraborty
  • 2. Introduction: Zebrafish (Danio rerio) is increasingly used as a model organism in research worldwide. One can enlist ‘n’ number of biological disciplines in which this small creature finds acceptance. The initiators of using Zebrafish were Creaser(1934), Streisinger(1981) and Kimmel(1996). However, we find that its ecological parameters too play a great part in making it a preferred choice over other model organisms. We quickly look at its advantage as a model organism. In general: 1) Cost effective: Its small, robust and cheap and so a large number of fish can be kept in the laboratory. Food involves aquatic planktons that can be easily reared in Lab. It has a small spawning time (2-3days) and releases hundreds of eggs at the spawning site. Also interesting to note is that as there is very less Mate Choice, Sexual Dimorphism is very limited and thus the effect of sex-specific hormones likes Testosterone or Estrogen on normal body function is eliminated to a large extent. In Bio-medicine: 2) Place in taxa: It is a vertebrate, so closer to humans than insects like Drosophila. Yet, epigenetic regulation is simpler and easier to determine than in higher organism like mice and rats. With its acceptance worldwide, its genetic sequence has been traced too at the Sanger institute of Cambridge, U.K. Thus, it is increasingly being used to model human diseases and screen therapeutic drugs. In Developmental Biology and Genetics: 3) External Fertilization and Rapid Development: Short Generation time (3-4 months), make it suitable for selection experiments. Zebrafish eggs are large relative to other fish, (0.7 mm in diameter at fertilization) and optically transparent, the yolk being sequestered into a separate cell as in meroblastic cleavage. Furthermore, fertilization is external so live embryos are accessible to manipulation and can be monitored through all developmental stages under a dissecting microscope.
  • 3. Development is rapid, with precursors to all major organs developing within 36 hours with food seeking and active avoidance behaviour observed within five days post fertilization, i.e. 2-3 days after hatching (both the findings reported by Kimmel et al., 1995). In Neuroscience and Cognition: 4)Kimmel et al published details of Cell differentiation and Neural Development in Zebrafish. Also, they roam in groups and like all social animals, exhibit mating rituals, aggression, dominance in hierarchy and related behviours which hint at their developed learning skills and cognitive abilities. They have been studied immensely in the last two decades. Thus, they are a great model in Neural Sciences as well. Scope of this document: We discuss the following characteristics of the Zebrafish: 1) Their schooling behavior especially: *No of fish per school *Natural Habitats and normal group size *Determination of Dominance and Hierarchy 2) Their individual behavior especially: *Mating behaviour *Male Male interaction and Aggression *Female Female interaction *Male Female sex markers
  • 4. Schooling (or Shoaling) Schooling is a tendency generally observed in predator and preys. Prey species encourage school formation to save themselves from predation. They travel in hordes and can give solitary predators a run for their life. However, on watching closely, we will see that their herd shape is rhomboidal. Note that in these figures, the ovals are individuals, the dominant ones at top and the arrows correspond to direction of movement within group. Some predator species too prefer to live in groups and attack and bring down a bigger or stronger prey. However, the shape of the predator group is highly different. This is because the prey wants to minimize its chances of encounter with the predator while the predator wants the opposite.
  • 5. Thus, area to perimeter ratio will be higher in prey and lower in predators. However, the shape of a Zebrafish school is entirely different. This is because although it is both a predator and prey. It sticks together to ward off bigger fishes but is also competitive in getting access to nutrition sources. (Discussion needed). Shoaling behaviour is proved to be innate in zebrafish.(Engeszer et al, 2007b) (Kerr, 1963) showed that this behavior commences soon after hatching and little ones form shoals as soon as removed from isolation . McCann and Matthews(1974) showed that fishes grown in isolation could not discriminate between conspecifics and other species suggesting that recognition is learned in the organism. Engeszer,Ryan and Parichy (2004) also showed that preferences for different intraspecific phenotypes are also learned. (Rosenthal and Ryan ,2005) demonstrated that stripes are a key shoaling cue. Zebrafish have also been known to use olfactory cues in both species and kin recognition (Gerlach & Lysiak, 2006). (Grant & Kramer, 1992; Gerlach, 2006; Spence & Smith, 2006).showed that Individual recognition may play a role in zebrafish since the species is known to establish dominance hierarchies.
  • 6. Group Size The number of fish per school is not at all fixed. In lab cultures, there is no presence of a distinguished shoal if the fish density is high in aquarium. If it is low, There will be one primary shoal in the whole aquarium. In the nature, there can be numerous shoals of numerous sizes depending on natural conditions. These conditions are determined by experiments. Shoal size and activity level are important parameters factoring shoaling decisions in zebra-fish. (Pritchard et al,2001) showed an individual preferred to be with the larger shoal and during tough compromising environmental conditions like lower temperature, the choice shifted to the most active shoal, regardless of the size. (Rhul and McRobert, 2005) also designed and carried out experiments to correlate sex with shoaling preferences. Males preferred to be in the group with the most females but females preferred the group with most members regardless of the sex ratio. (Krause et al.,1999) found that fishes could judge the nutrition levels within their species and preferred to shoal with the well-fed ones. It was also shown that such fishes subsequently enjoyed better foraging success. Gerlach et al. showed that the inter-individual distance between two fishes was a function of their phenotypical relatedness; The more the related, the lesser the distance. This also hints at the cognitive abilities of the zebra-fish. . Dominance and Hierarchy Females and Males both deploy tactics to dominate over each other and form a social hierarchy. Display of might involves chasing the competitor and often on serious cases, biting. Aggression is displayed by both the fishes aligning head to tail and opening of fins while moving upwards in a helical motion. (R.Spence was the first to observe). (Larson, et al., 2006) were successful in showing that aggression is decreased following formation of a dominion order. They also showed that the Dominant fish in a pair is darker and utilizes the whole aquarium while the sub-ordinate is pale and restricted to a small area.
  • 7. Once established, Dominance ranks remain fairly the same with time, notably in experiments lasting 5 days. (Grant & Kramer, 1992; Spence and Smth,2005). G.Gerlach was instrumental in showing that the same rank was established between males after they were segregated for 4 days and then re-united. (Grant and Krammer ,1992) demonstrated that Sex is not a factor in determining the hierarchy in the group. It has been demonstrated that group formation is a function of food-area density and food/individual density. Mating Behaviour The mating behaviour of Zebrafish is very distinct and well-established.(Breder and Rosen,1966) showed that photo-periodism or the amount of light and darkness influences egg laying in zebrafish. Males court females by chasing them often nudging her flanks with his snout and attempting to lead her to a spawning site (where egg-laying is preferred). The male fish displays courtship behaviour by swimming around or in front of the female in proper circles or double circles. Dis-interest on the part of the female is answered by the male shuttling between the site of egg-laying and the female. On passing the spawning site, the males align genital pore with the female and oscillate with drastic frequencies to induce ovi-position. 5-10 eggs are laid at every such site. The exercise can last upto an hour although the intensity is decreased after the first 30 minutes. (reported by Darrow & Harris, 2004). (Spence et al, 2007b) reported similar behaviour In Wild varieties although the latter are known to use the entire column (Surface to Water Bed; height).Also, 3 to 7 fishes are involved in the mating ritual. Zebrafish follows the same mating behaviour pattern with the other fishes of the Cyprinid order. They spawn in unison and scatter their egg preferably on surfaces where the eggs will have lower risk of predation.(Spence and Smith, 2005) were the first to report this behaviour. In large groups, males chase females. However, in low density, males confine their movement to a territory central to a spawning site and a few body-length of theirs in diameter. They chase away other males when they approach. Males and Females upon introduction to the same sex establish hierarchy as described before.
  • 8. Sex markers Sexually mature females are usually rounder-bellied, slightly less colourful and a little larger than males. The males are torpedo shaped and shorter. They have gold stripes between the blue stripes; females have silver stripes instead of gold The differences are especially clear when the fish are in spawning condition as the males intensify in colour and the females fill with eggs.(www.fishbase.org, www.wikipedia.org ) More Information and References: 1)www.sanger.ac.uk 2) zfin.org 3) CREASER, C. W. (1934). The technique of handling the zebrafish (Brachydanio rerio) for the production of eggs which are favourable for embryological research and are available at any specified time throughout the year. Copeia 1934, 159-161. 4) STREISINGER, G., WALKER, C., DOWER, N., KNAUBER, D. & SINGER, F. (1981). Production of clones of homozygous diploid zebra fish (Brachydanio rerio). Nature 291, 293-296. 5) KIMMEL, C. B., BALLARD, W. W., KIMMEL, S. R., ULLMANN, B & SCHILLING, T. F. (1995). Stages of embryonic development of the zebrafish. Developmental Dynamics 203, 253-310. 6) ROWENA SPENCE1*, GABRIELE GERLACH2, CHRISTIAN LAWRENCE3 AND CARL SMITH The behaviour and ecology of the zebrafish, Danio rerio. 7) ENGESZER, R. E., ALBERICI DA BARBIANO, L., RYAN, M. J. & PARICHY, D. M. (2007b). Timing and plasticity of shoaling behaviour in the zebrafish, Danio rerio. Animal Behaviour (in press).
  • 9. 8) KERR, J. P. (1963). Grouping behaviour of the zebrafish as influenced by social isolation. American Zoologist 2, 532-533. 9) MCCANN, L. I. & MATTHEWS, J. J. (1974). The effects of lifelong isolation on species identification in zebra fish (Brachydanio rerio). Developmental Psychobiology 7, 159-163. 10) MCCANN, L. I. & CARLSON, C. C. (1982). Effect of cross-rearing on species identification in zebra fish and pearl danios. Developmental Psychobiology 15, 71- 74. 11) ENGESZER, R. E., ALBERICI DA BARBIANO, L., RYAN, M. J. & PARICHY, D. M. (2007b). Timing and plasticity of shoaling behaviour in the zebrafish, Danio rerio. Animal Behaviour (in press). 12) ROSENTHAL, G. G. & RYAN, M. J. (2005). Assortative preferences for stripes in danios. Animal Behaviour 70, 1063-1066. 13) GERLACH G.& LYSIAK, N. (2006). Kin recognition and inbreeding avoidance in zebrafish, Danio rerio, is based on phenotype matching. Animal Behaviour 71, 1371-1377. 14) GRANT, J. W. A. & KRAMER, D. L. (1992). Temporal clumping of food arrival reduces its monopolization and defense by zebrafish, Brachydanio rerio. Animal Behaviour 44, 101-110. 15) GERLACH, G. (2006). Pheromonal regulation of reproductive success in female zebrafish: female suppression and male enhancement. Animal Behaviour 72, 1119-1124. 16) PRITCHARD, V. L., LAWRENCE, J., BUTLIN, R. K. & KRAUSE, J. (2001). Shoal choice in zebrafish, Danio rerio: the influence of shoal size and activity. Animal Behaviour 62, 1085-1088. 17) RHUL, N. & MCROBERT, S. P. (2005). The effect of sex and shoal size on shoaling behaviour in Danio rerio. Journal of Fish Biology 67, 1318-1326. 18) KRAUSE, J., HARTMANN, N. & PRITCHARD, V. L. (1999). The influence of nutritional state on shoal choice in zebrafish, Danio rerio. Animal Behaviour 57, 771-775. 19) LARSON, E. T., O’MALLEY, D. M. & MELLONI JR, R. H. (2006). Aggression and vasotocin are associated with dominant-subordinate relationships in zebrafish. Behavioural Brain Research 167, 94-102. 20) GRANT, J. W. A. & KRAMER, D. L. (1992). Temporal clumping of food arrival reduces its monopolization and defense by zebrafish, Brachydanio rerio. Animal
  • 10. Behaviour 44, 101-110. 21) BREDER, C. M. & ROSEN, D. E. (1966). Modes of reproduction in fishes. New York, Natural History Press. 22) DARROW, K. O. & HARRIS, W. A. (2004). Characterisation and development of courtship in zebrafish, Danio rerio. Zebrafish 1, 40-45. 23) SPENCE, R. & SMITH, C. (2005). Male territoriality mediates density and sex ratio effects on oviposition in the zebrafish (Danio rerio). Animal Behaviour 69, 1317- 1323.