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Uses of the OptIPortal


 Presentation to the Minority Serving Institutions
   Cyberinfrastructure Empowerment Coalition
                  Calit2@UCSD
                  June 10, 2010


                       Dr. Larry Smarr
Director, California Institute for Telecommunications and
                  Information Technology
                Harry E. Gruber Professor,
      Dept. of Computer Science and Engineering
          Jacobs School of Engineering, UCSD
The OptIPuter Project: Creating High Resolution Portals
Over Dedicated Optical Channels to Global Science Data
                                                                                     Scalable
                                                                                    Adaptive
                                                                                    Graphics
                                                                                   Environment
                                                                                     (SAGE)




                                                                                       Picture
                                                                                       Source:
                                                                                        Mark
                                                                                      Ellisman,
                                                                                      David Lee,
                                                                                     Jason Leigh
        Calit2 (UCSD, UCI), SDSC, and UIC Leads—Larry Smarr PI
           Univ. Partners: NCSA, USC, SDSU, NW, TA&M, UvA, SARA, KISTI, AIST
            Industry: IBM, Sun, Telcordia, Chiaro, Calient, Glimmerglass, Lucent
Visual Analytics--Use of Tiled Display Wall OptIPortal
to Interactively View Microbial Genome (5 Million Bases)




                            Acidobacteria bacterium Ellin345 Soil
                               Bacterium 5.6 Mb; ~5000 Genes
                                  Source: Raj Singh, UCSD
Use of Tiled Display Wall OptIPortal
to Interactively View Microbial Genome




                         Source: Raj Singh, UCSD
Use of Tiled Display Wall OptIPortal
to Interactively View Microbial Genome




                          Source: Raj Singh, UCSD
Students Learn Case Studies
in the Context of Diverse Medical Evidence



              UIC Anatomy Class




      electronic visualization laboratory, university of illinois at chicago
the AESOP Nearly Seamless OptIPortal

46‖ NEC Ultra-Narrow Bezel 720p LCD Monitors




         Source: Tom DeFanti, Calit2@UCSD;
Commercial Spinoff from Calit2@UC Irvine:
                   hiperwall, inc.




UCI Chancellor Drake and Others Watch "Our Students Speak" on hiperwall at Calit2@UCI



            Samsung is a Hardware Integration Partner
                              http://hiperwall.com/
Providing End-to-End CI
               for Petascale End Users
  Two 64K                                   Mike Norman, SDSC
   Images                                    October 10, 2008
   From a
Cosmological
 Simulation    log of gas temperature   log of gas density
  of Galaxy
   Cluster
 Formation
Green
                                                    Initiative:

                                                    Can Optical
                                                   Fiber Replace
                                                   Airline Travel
                                                  for Continuing
                                                  Collaborations
                                                         ?




Source: Maxine Brown, OptIPuter Project Manager
High Definition Video Connected OptIPortals:
Virtual Working Spaces for Data Intensive Research



                                                NASA Interest
                                                in Supporting
                                                    Virtual
                                                  Institutes




                                                 LifeSize HD

           NASA Ames
      Lunar Science Institute    Extend Throughout MSI-CIEC?
        Mountain View, CA
            Source: Falko Kuester, Kai Doerr Calit2;
                      Michael Sims, NASA
OptIPuter Establishes
       Room-to-Room Telepresence on a Global Scale
     January 15, 2008                                             Melbourne, Australia




                                                                      Calit2@San Diego
nuaryNo Calit2 Person Physically Flew to Australia to Bring This Up!
      15, 2008
                         Covise, Phil Weber, Jurgen Schulze, Calit2
                                CGLX, Kai-Uwe Doerr , Calit2
                        www.calit2.net/newsroom/release.php?id=1219
OptIPuter Persistent Infrastructure Enables
        Calit2 and U Washington CAMERA Collaboratory
Photo Credit: Alan Decker                              Feb. 29, 2008

                                           Ginger
                                         Armbrust’s
                                          Diatoms:
                                        Micrographs,
                                       Chromosomes,
                                          Genetic
                                         Assembly

     iHDTV: 1500 Mbits/sec Calit2 to
     UW Research Channel Over NLR
EVL’s SAGE OptIPortal VisualCasting
          Multi-Site OptIPuter Collaboratory
                                 CENIC CalREN-XD Workshop Sept. 15, 2008
          Total Aggregate VisualCasting Bandwidth for Nov. 18, 2008
EVL-UI Chicago
            At Supercomputing 2008 Austin, Texas
                       Sustained 10,000-20,000 Mbps!
                        November, 2008                          Streaming 4k
                 SC08 Bandwidth Challenge Entry

                                                 Remote:
                On site:
                                           U of Michigan
     SARA (Amsterdam)                         UIC/EVL
  U Michigan
     GIST / KISTI (Korea)                U of Queensland
     Osaka Univ. (Japan)            Russian Academy of Science
                                        Masaryk Univ. (CZ)
               Requires 10 Gbps Lightpath to Each Site



           Source: Jason Leigh, Luc Renambot, EVL, UI Chicago
3D Stereo Head Tracked OptIPortal:
            NexCAVE




  Array of JVC HDTV 3D LCD Screens
    KAUST NexCAVE = 22.5MPixels
 www.calit2.net/newsroom/article.php?id=1584
       Source: Tom DeFanti, Calit2@UCSD
3D CAVE to CAVE Collaboration
         with HD Video
                                   Photo: Tom DeFanti




Calit2’s Jurgen Schulze in San Diego in StarCAVE and
Kara Gribskov at SC’09 in Portland, OR with NextCAVE
For Technical Details
On OptIPuter Project and OptIPortals




                           “OptIPlanet: The OptIPuter
                            Global Collaboratory” –
                               Special Section of
                              Future Generations
                              Computer Systems,
                              Volume 25, Issue 2,
                                February 2009
Campus Preparations Needed
to Accept CENIC CalREN Handoff to Campus




           Source: Jim Dolgonas, CENIC
Current UCSD Prototype Optical Core:
           Bridging End-Users to CENIC L1, L2, L3 Services
                                     Quartzite Communications
  To 10GigE cluster
   node interfaces
                                            Core Year 3
                                             Enpoints:
                                           Quartzite    Wavelength
                                     >= 60 endpoints at 10Switch
                                             Core
                                                           GigE
                                                         Selective
       .....


                                       >= 32 Packet switched
                                                         Lucent                      To 10GigE cluster
                                                                                    node interfaces and
                                    >= 32 Switched wavelengths                           other switches


To cluster nodes
                   .....
                                    >= 300 Connected endpoints
                                                              Glimmerglass
                                                                                               To cluster nodes
                                                                                       .....
                                                               Production
            GigE Switch with
                                                                 OOO
           Dual 10GigE Upliks
                                                                 Switch
To cluster nodes
                                     Approximately 0.5 TBit/s
                                            32 10GigE

                   .....
                                      Arrive at the ―Optical‖                   GigE Switch with
                                                                 Force10       Dual 10GigE Upliks

                                         Center of Campus.
                                             ...

            GigE Switch with
                                     Switching is Packet Switch
                                     To
                                                    a Hybrid of:             CalREN-HPR
                                                                              Research
           Dual 10GigE Upliks
                                    Packet, Lambda, Circuit --
                                     other
                                     nodes
                                                                                Cloud
    GigE
                                    OOO and Packet Switches
 10GigE
                                                                             Campus Research
  4 GigE
  4 pair fiber
                                                                                 Cloud
                                                    Juniper T320

                                Source: Phil Papadopoulos, SDSC/Calit2
                                     (Quartzite PI, OptIPuter co-PI)
                                 Quartzite Network MRI #CNS-0421555;
                                        OptIPuter #ANI-0225642
Calit2 Sunlight
            Optical Exchange Contains Quartzite




 Maxine
 Brown,
EVL, UIC
OptIPuter
 Project
Manager
UCSD Campus Investment in Fiber Enables
Consolidation of Energy Efficient Computing & Storage
                                   CENIC, NLR, I2DCN
               Nx
              10Gbe



                        Gordon –
                       HPC System
    Cluster
    Condo

                                                          DataOasis
                                                       (Central) Storage
                      Triton – Petadata
                           Analysis
    Scientific
  Instruments


                        Digital Data        Campus Lab            OptIPortal
                        Collections           Cluster         Tile Display Wall


                  Source: Philip Papadopoulos, SDSC, UCSD
―Blueprint for the Digital University‖--Report of the
  UCSD Research Cyberinfrastructure Design Team
• Focus on data storage and data curation
  – These Become the Centralized Components
  – Other Common Elements ―Plug In‖




       research.ucsd.edu/documents/rcidt/RCIDTReportFinal2009.pdf
Academic Research ―OptIPlatform‖ Cyberinfrastructure:
      A 10Gbps ―End-to-End‖ Lightpath Cloud



                                                                             HD/4k Video Cams
                                              HD/4k Telepresence
                               Instruments
          End User                                                                   HPC
          OptIPortal

                     10G
                  Lightpaths




                                 National LambdaRail



  Campus
Optical Switch



                  Data Repositories & Clusters          HD/4k Video Images
Follow My Talks and Tweets at lsmarr.calit2.net

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OptIPortal Uses for Scientific Research

  • 1. Uses of the OptIPortal Presentation to the Minority Serving Institutions Cyberinfrastructure Empowerment Coalition Calit2@UCSD June 10, 2010 Dr. Larry Smarr Director, California Institute for Telecommunications and Information Technology Harry E. Gruber Professor, Dept. of Computer Science and Engineering Jacobs School of Engineering, UCSD
  • 2. The OptIPuter Project: Creating High Resolution Portals Over Dedicated Optical Channels to Global Science Data Scalable Adaptive Graphics Environment (SAGE) Picture Source: Mark Ellisman, David Lee, Jason Leigh Calit2 (UCSD, UCI), SDSC, and UIC Leads—Larry Smarr PI Univ. Partners: NCSA, USC, SDSU, NW, TA&M, UvA, SARA, KISTI, AIST Industry: IBM, Sun, Telcordia, Chiaro, Calient, Glimmerglass, Lucent
  • 3. Visual Analytics--Use of Tiled Display Wall OptIPortal to Interactively View Microbial Genome (5 Million Bases) Acidobacteria bacterium Ellin345 Soil Bacterium 5.6 Mb; ~5000 Genes Source: Raj Singh, UCSD
  • 4. Use of Tiled Display Wall OptIPortal to Interactively View Microbial Genome Source: Raj Singh, UCSD
  • 5. Use of Tiled Display Wall OptIPortal to Interactively View Microbial Genome Source: Raj Singh, UCSD
  • 6. Students Learn Case Studies in the Context of Diverse Medical Evidence UIC Anatomy Class electronic visualization laboratory, university of illinois at chicago
  • 7. the AESOP Nearly Seamless OptIPortal 46‖ NEC Ultra-Narrow Bezel 720p LCD Monitors Source: Tom DeFanti, Calit2@UCSD;
  • 8. Commercial Spinoff from Calit2@UC Irvine: hiperwall, inc. UCI Chancellor Drake and Others Watch "Our Students Speak" on hiperwall at Calit2@UCI Samsung is a Hardware Integration Partner http://hiperwall.com/
  • 9. Providing End-to-End CI for Petascale End Users Two 64K Mike Norman, SDSC Images October 10, 2008 From a Cosmological Simulation log of gas temperature log of gas density of Galaxy Cluster Formation
  • 10. Green Initiative: Can Optical Fiber Replace Airline Travel for Continuing Collaborations ? Source: Maxine Brown, OptIPuter Project Manager
  • 11. High Definition Video Connected OptIPortals: Virtual Working Spaces for Data Intensive Research NASA Interest in Supporting Virtual Institutes LifeSize HD NASA Ames Lunar Science Institute Extend Throughout MSI-CIEC? Mountain View, CA Source: Falko Kuester, Kai Doerr Calit2; Michael Sims, NASA
  • 12. OptIPuter Establishes Room-to-Room Telepresence on a Global Scale January 15, 2008 Melbourne, Australia Calit2@San Diego nuaryNo Calit2 Person Physically Flew to Australia to Bring This Up! 15, 2008 Covise, Phil Weber, Jurgen Schulze, Calit2 CGLX, Kai-Uwe Doerr , Calit2 www.calit2.net/newsroom/release.php?id=1219
  • 13. OptIPuter Persistent Infrastructure Enables Calit2 and U Washington CAMERA Collaboratory Photo Credit: Alan Decker Feb. 29, 2008 Ginger Armbrust’s Diatoms: Micrographs, Chromosomes, Genetic Assembly iHDTV: 1500 Mbits/sec Calit2 to UW Research Channel Over NLR
  • 14. EVL’s SAGE OptIPortal VisualCasting Multi-Site OptIPuter Collaboratory CENIC CalREN-XD Workshop Sept. 15, 2008 Total Aggregate VisualCasting Bandwidth for Nov. 18, 2008 EVL-UI Chicago At Supercomputing 2008 Austin, Texas Sustained 10,000-20,000 Mbps! November, 2008 Streaming 4k SC08 Bandwidth Challenge Entry Remote: On site: U of Michigan SARA (Amsterdam) UIC/EVL U Michigan GIST / KISTI (Korea) U of Queensland Osaka Univ. (Japan) Russian Academy of Science Masaryk Univ. (CZ) Requires 10 Gbps Lightpath to Each Site Source: Jason Leigh, Luc Renambot, EVL, UI Chicago
  • 15. 3D Stereo Head Tracked OptIPortal: NexCAVE Array of JVC HDTV 3D LCD Screens KAUST NexCAVE = 22.5MPixels www.calit2.net/newsroom/article.php?id=1584 Source: Tom DeFanti, Calit2@UCSD
  • 16. 3D CAVE to CAVE Collaboration with HD Video Photo: Tom DeFanti Calit2’s Jurgen Schulze in San Diego in StarCAVE and Kara Gribskov at SC’09 in Portland, OR with NextCAVE
  • 17. For Technical Details On OptIPuter Project and OptIPortals “OptIPlanet: The OptIPuter Global Collaboratory” – Special Section of Future Generations Computer Systems, Volume 25, Issue 2, February 2009
  • 18. Campus Preparations Needed to Accept CENIC CalREN Handoff to Campus Source: Jim Dolgonas, CENIC
  • 19. Current UCSD Prototype Optical Core: Bridging End-Users to CENIC L1, L2, L3 Services Quartzite Communications To 10GigE cluster node interfaces Core Year 3 Enpoints: Quartzite Wavelength >= 60 endpoints at 10Switch Core GigE Selective ..... >= 32 Packet switched Lucent To 10GigE cluster node interfaces and >= 32 Switched wavelengths other switches To cluster nodes ..... >= 300 Connected endpoints Glimmerglass To cluster nodes ..... Production GigE Switch with OOO Dual 10GigE Upliks Switch To cluster nodes Approximately 0.5 TBit/s 32 10GigE ..... Arrive at the ―Optical‖ GigE Switch with Force10 Dual 10GigE Upliks Center of Campus. ... GigE Switch with Switching is Packet Switch To a Hybrid of: CalREN-HPR Research Dual 10GigE Upliks Packet, Lambda, Circuit -- other nodes Cloud GigE OOO and Packet Switches 10GigE Campus Research 4 GigE 4 pair fiber Cloud Juniper T320 Source: Phil Papadopoulos, SDSC/Calit2 (Quartzite PI, OptIPuter co-PI) Quartzite Network MRI #CNS-0421555; OptIPuter #ANI-0225642
  • 20. Calit2 Sunlight Optical Exchange Contains Quartzite Maxine Brown, EVL, UIC OptIPuter Project Manager
  • 21. UCSD Campus Investment in Fiber Enables Consolidation of Energy Efficient Computing & Storage CENIC, NLR, I2DCN Nx 10Gbe Gordon – HPC System Cluster Condo DataOasis (Central) Storage Triton – Petadata Analysis Scientific Instruments Digital Data Campus Lab OptIPortal Collections Cluster Tile Display Wall Source: Philip Papadopoulos, SDSC, UCSD
  • 22. ―Blueprint for the Digital University‖--Report of the UCSD Research Cyberinfrastructure Design Team • Focus on data storage and data curation – These Become the Centralized Components – Other Common Elements ―Plug In‖ research.ucsd.edu/documents/rcidt/RCIDTReportFinal2009.pdf
  • 23. Academic Research ―OptIPlatform‖ Cyberinfrastructure: A 10Gbps ―End-to-End‖ Lightpath Cloud HD/4k Video Cams HD/4k Telepresence Instruments End User HPC OptIPortal 10G Lightpaths National LambdaRail Campus Optical Switch Data Repositories & Clusters HD/4k Video Images
  • 24. Follow My Talks and Tweets at lsmarr.calit2.net