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Crowd-Sourcing to Build a Structure Centric Community for Chemists  Antony Williams Whitney Symposium 2008 - Networks
Social Networking for Chemists
Network Drug Discovery Tools www.curehunter.com
Beware the Networks!
Collaborative Authoring in Academia ,[object Object]
Collaborative Authoring for Drug Discovery ,[object Object]
Collaborative Knowledge Management  for Chemists – Wikipedia, Built by a Network
and biologists…WikiProteins
WikiProteins What  Is Tegafur?
Commonly Lacking… ,[object Object],[object Object],[object Object],[object Object]
A Search Engine for Chemists ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
ChemSpider Data Content ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
A Structure Centric Community for Chemists ,[object Object],[object Object],[object Object],[object Object]
Tell me about Aspirin
Tell me about Aspirin
Links out to KEGG Kyoto Encyclopedia of Genes and Genomes
Tell me about Aspirin
Tell me About Aspirin
Tell me about Aspirin
Tell me about Aspirin
Abstract Compounds? ,[object Object],[object Object],[object Object],[object Object]
Example Search
Example Search
Example Search 2 ,[object Object],[object Object]
Example Search 2
Complex Search
Search Open Access Journals – ChemSpider
Search PubMed – ChemSpider
The Quality of Data Online… ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Who holds THE Quality Authority? ,[object Object],[object Object],[object Object]
Quality is a Major Issue- Search Butanol
Crowd-sourcing Database Compilation
Wikipedia – Crowdsourcing Chemistry
Wikipedia Chemistry Curation project ,[object Object],[object Object],[object Object],[object Object]
Thymol Blue on ChemSpider ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Differences between ChemSpider/Wikipedia No Analytical Data Active editors – about 50 (?) Active depositors/curators – 30  No Prediction of properties ???? 5000 people/day; 1100 registered Detailed compound monographs Compound monographs linked Text Complex queries – Properties, Text, structure/substructure, OA publishers, Data  Sources, … ~5000 organics, 2000 others >20 million unique structures Wikipedia ChemSpider
Differences between Wikipedia/ChemSpider Growing reputation as focused on quality Worldwide reputation as quality source Chemistry is the focus of ‘Spider Chemistry is a subset of the ‘Pedia Mixed “licensing” GFL licensing for everything Growing team of WP:Chem advocates, curators and admins Strong team of WP:Chem advocates, curators and admins “ Out of a basement” on three servers and 5 volunteers Established infrastructure and Wikipedia Foundation Team Primarily  Microsoft .NET technologies with OS components  Supported by tried and tested Media-Wiki platform. ChemSpider Wikipedia
Crowd-sourcing Curation ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Multi-level Curation and Approval
Post Comments ,[object Object]
Crowd-sourcing Chemistry ,[object Object],[object Object],[object Object]
But, when registered and logged in… ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Adding to the Database - Structure
Adding New Text Data Add Publication Add Identifier Add URL
Adding Supplementary Info to a Structure
Can ChemSpider Enable Discovery? ,[object Object]
ChemSpider – Research in Progress ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
LASSO  Ligand Activity by Surface Similarity Order
LASSO Descriptors on ChemSpider SEMANTIC WEB in action
LASSO Searching Method 1 ,[object Object]
It WORKS - Enrichment Plot ,[object Object],[object Object],[object Object],[object Object]
Tipping Point ,[object Object]
ChemSpider Forums/Blogs ,[object Object],[object Object]
ChemSpider TouchGraph
What would we most like to do? ,[object Object],[object Object],[object Object],[object Object]
“ ChemSpider Inside” ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Where to from here?  Short term ,[object Object],[object Object],[object Object],[object Object],[object Object]
Where to from here?  Mid-term ,[object Object],[object Object],[object Object],[object Object],[object Object]
Where to from here?  Mid-Term ,[object Object],[object Object]
Our Challenges ,[object Object],[object Object],[object Object],[object Object]
Acknowledgments  ,[object Object],[object Object],[object Object],[object Object],[object Object]
Further reading ,[object Object],[object Object],[object Object]

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Whitney Symposium Lecture June 2008