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Mechanisms in the Sciences:
A Gentle Introduction
Federica Russo
Dipartimento di Studi Umanistici, Università di Ferrara
Overview
The received view and a possible consensus
The rise of mechanisms in phil sci
The mechanism debate in the sciences
Mechanisms and …
Explanation
Functions
Causal assessment
Evidence
Practical use: mechanisms and the evidence hierarchy
2
THE RECEIVED VIEW
3
Machamer, Darden and Craver:
‘Mechanisms are entities and activities organized such that they are
productive of regular changes from start or set-up to finish or
termination conditions.’ (Machamer, Darden and Craver 2000 p3.)
Glennan:
‘A mechanism for a behavior is a complex system that produces that
behavior by the interaction of a number of parts, where the
interactions between parts can be characterized by direct, invariant,
change-relating generalizations.’ (Glennan 2002b pS344.)
Bechtel and Abrahamsen:
‘A mechanism is a structure performing a function in virtue of its
component parts, component operations, and their organization.
The orchestrated functioning of the mechanism is responsible for
one or more phenomena.’ (Bechtel and Abrahamsen 2005 p423.)
4
A POSSIBLE CONSENSUS
5
Illari & Williamson:
A mechanism for a phenomenon is composed of entities
and activities organized so that they are responsible for the
phenomenon.
Illari & Williamson give up on:
Regularity
Start up, finishing conditions
Complex system
Mechanistic explanation:
Identification of the phenomenon
Identification of entities and activities involved
Identification of the organisation
6
WHY MECHANISMS?
7
Physical (causal) connections
Process theories of causality
Salmon-Dowe approach
A development of Russell-Reichenbach
(world-lines, at-at theory)
Salmon: ‘put the cause into because’
The because is given by the physical, causal process
(Ontic explanation)
8
Processes in biology?
MDC (2000, p. 7):
Although we acknowledge the possibility that Salmon’s
analysis may be all there is to certain fundamental types
of interactions in physics, his analysis is silent as to the
character of the productivity in the activities investigated
by many other sciences. Mere talk of transmission of a
mark or exchange of a conserved quantity does
not exhaust what these scientists know about
productive activities and about how activities effect
regular changes in mechanisms.
9
Processes in social science?
Russo (2009, p.26):
The need to look directly at social scientists’ work was motivated by a
possible difference between causal claims that involve reasonably clear
causal mechanisms and causal claims that do not. I went through five case
studies, and it turned out that none of them contains concepts typical of
aleatory causality in order to get an understanding of causal relations—to
borrow Salmon’s terminology again. Instead, statistical causality is
definitively preferred. However, to prefer statistical causality does not ipso
facto rule out mechanisms from the causal talk. […] the question is not
whether or not we aim at identifying causal mechanisms, rather, how do
we come to identify them. Causal mechanisms are not identified
through causal processes and interactions, but, according to the
social scientists’ practice, they are statistically modelled.
10
MECHANISMS IN THE SCIENCES
11
Biology and neuroscience
Bechtel, Craver, Darden, MDC, …
Functional individuation
Mechanistic explanation
Decomposition / re-composition
…
12
Social science
Analytical sociologists, Little, Russo (&
Mouchart, Wunsch), …
Mechanisms and
Methodological individualism
Statistical modelling
Social regularities
Human action
Social ontology
…
13
MECHANISMS AND EXPLANATION
14
Explanation
Ontic and epistemic mechanistic explanations
Craver, Bechtel (biology / neuroscience)
Illari: ‘reconciliation’ of the ontic and epistemic
Explain … how?
Organisation, recursive decomposition
Backwards, downwards, or upwards
15
Aetiological (mechanistic)
explanation in social science
Structural-modelling explanations
16
Self-rated health in the Baltic countries 1994-1999
17
What are the causes of self-rated
health in the Baltic countries in
the ‘90s?
X Y
Joint probability distribution
P(Ed, Soc, Phy, Loc, Psy, Alc, Self)
Recursive decomposition:
P(Self|Alc, Psy, Loc, Phy)
P(Alc|Ed, Psy, Phy)
P(Psy|Loc, Soc, Phy)
P(Loc|Ed)
P(Phy) P(Soc) P(Ed) 18
Here, explanation is
mechanistic explanation
epistemic rather than ontic
Mechanistic explanation is successful insofar as it
spells out the functioning of the mechanism
Spelling out the functioning of the mechanism
means identifying the causes, their actions, and
their effects
MECHANISMS AND FUNCTIONS
Functional architectures and
social structures
1. Observe properties of a
social system
2. Infer the functional
structure
3. Work out the causal
mechanism (based on 2)
4. Confirm 2 based on 3
22
Functions and functions
The role of a mechanism or of a component of a mechanism
Craver’s isolated descriptions
“But this leaves it ambiguous whether the function is the capacity, described
in isolation and simply ‘picked out’ by its contextual role, or, instead, the
contextual role by virtue of which the capacity is picked out. A complete
description of an item’s role would describe each of these . . . There is a
difference, after all, between knowing that spark plugs produce sparks and
knowing how that sparking is situated within the complex mechanisms of an
engine.” (2001)
Description of (the functioning of) a mechanism
Cummins’ role functions
“x functions as a φ (or, the function of x in s is to φ) relative to an analytical
account A of s’s capacity to ψ just in case x is capable of φing in s and A
appropriately and adequately accounts for s’s capacity to ψ by, in part,
appealing to the capacity of x to φ in s.” (1975)
Functions in S-M explanations
Functions are role-functions
For the mechanism and for its components
Mechanisms are described in a contextual way
Functions help build the conceptual model
They are the theoretical underpinnings of the causal
variables
A strong conceptual link between causes and functions
MECHANISMS AND
CAUSAL ASSESSMENT
25
Causal assessment
The Russo-Williamson Thesis
To establish a causal claim we typically need
evidence of mechanisms and of difference-making
An epistemological thesis about evidence for causal claims
First formulated for the health sciences,
but can be extended to other scientific contexts
26
Arguments for RWT
Medical practice
Preamble of IARC monographs
History of medicine
Semmelweis and puerperal fever
Snow and cholera epidemic
Evidence in epidemiology
Hill’s guidelines
27
EVIDENCE OF MECHANISMS
28
Disambiguation
Mechanistic evidence vs
evidence of mechanisms
Difference-making evidence vs
evidence of difference-making
Evidence vs
evidence-gathering methods
Difference-making / Mechanisms
A conceptual distinction
In practice, highly intertwined
29
Categories of evidence of mechanism
C E
C E
1. That there is a specific
linking mechanism
2. That there is some kind of
linking mechanism or other
3. That there is no linking
mechanism
C E
30
What evidence of mechanism is
1. Evidence of the existence and nature of the entities and
activities of a linking mechanism, and their organization.
In vitro evidence
Animal experiments
Analogous mechanisms
Autopsy
Simulation
Even RCTs…
2. Evidence that suggests that a linking mechanism does not
or could not exist.
Well established knowledge
Energy constraints on biochemical mechanisms
Comparative studies
C E
C E
C E
31
Quality of evidence of mechanism
Pluses
Each independent method for
detection of entity/interaction
Each independent research group
confirming the result
More entities in the mechanism
found
More links in the mechanism
established
Analogous mechanisms known
Robust, reproducible in different
conditions
Minuses
Single method used for detection of
entity/interaction
Single research group confirming the
result
Fewer entities in the mechanism
found
Fewer links in the mechanism
established
No analogous mechanisms known
Fragile, not reproducible in slightly
varying conditions
32
PRACTICAL (SCIENTIFIC) USE
33
Mechanisms in the evidence hierarchy
The evidence hierarchy:
the pillar of EBM
The role of mechanisms
(from top to bottom)
‘Reinforced concrete’
34
The analogy of reinforced concrete
Evidence: integration, not substitution
Difference making helps with masking
Mechanisms helps with confounding
Integration helps solve more problems, and better
Difference making and mechanisms help each other with
their respective weaknesses
The more integrated, the merrier
35
TO SUM UP AND CONCLUDE
36
Mechanisms:
a fertile field in phil sci
Mechanism debate from causation and explanation
Usefulness and interest
Not for mechanisms per se
But for mechanisms and other concepts
Mechanisms
Are embedded in modelling practices
Can help move forward methodological quarrels
37
38
Super selected bibliography
Bechtel, William (2006). Discovering Cell Mechanisms: the Creation of Modern Cell Biology. Cambridge University Press.
Bradford Hill, A. (1965). The environment and disease: association or causation? Proceedings of the Royal Society of Medicine, 58.
Clarke, B. (2011). Causality in medicine with particular reference to the viral causation of cancers. PhD thesis, Department of Science and Technology Studies,
University College London.
Craver, Carl (2001). Role functions, mechanisms and hierarchy, Philosophy of Science, 68(1).
Craver, Carl (2007). Explaining the Brain. Clarendon Press.
Cummins, Robert (1975). Functional analysis. Journal of Philosophy, 72.
Demeulenaere, Pierre (ed.) (2011). Analytical Sociology and Social Mechanisms. Cambridge University Press.
Franck R. (ed.) (2002), The explanatory power of models, Kluwer.
Glennan, Stuart (1996). Mechanisms and the nature of causation. Erkenntnis, 44, 49–71.
Illari, P. M. (2011). Mechanistic evidence: Disambiguating the Russo- Williamson thesis. International Studies in the Philosophy of Science, 25.
Illari, Phyllis (2013). Mechanistic explanation: Integrating the ontic and epistemic. Erkenntnis, 78.
llari, Phyllis McKay and Williamson, Jon (2010). Function and organization: Comparing the mechanisms of protein synthesis and natural selection. Studies in the
History and Philosophy of the Biological and Biomedical Sciences, 41.
Illari, Phyllis McKay and Williamson, Jon (2012). What is a mechanism?: Thinking about mechanisms across the sciences. European Journal of the Philosophy of
Science, 2.
Joffe, Michael (2013). The concept of causation in biology. Erkenntnis, 78.
Little, Daniel (2006). Levels of the social. In The philosophy of anthropology and sociology (ed. M. Risjord and S. Turner), pp. 343–371. Elsevier.
Machamer, Peter, Darden, Lindley, and Craver, Carl (2000). Thinking about mechasnisms. Philosophy of Science, 67.
Mouchart, Michel and Russo, Federica (2011). Causal explanation: Recursive decompositions and mechanisms. In Causality in the sciences (ed. P. M. Illari, F. Russo,
and J. Williamson). Oxford University Press.
Russo, Federica (2009). Causality and causal modelling in the social sciences. Measuring variations. Methodos Series. Springer.
Russo, Federica (2011b). Explaining causal modelling. Or, what a causal model ought to explain. In New Essays in Logic and Philosophy of Science (ed. M. D’Agostino,
G. Giorello, F. Laudisa, T. Pievani, and C. Sinigaglia). College Publications.
Russo, F. and Williamson, J. (2007). Interpreting causality in the health sciences. International Studies in the Philosophy of Science, 21(2).
Ruzzene, Attilia (2012). Meccanismi sociali nelle scienze sociali. APhEx, 5.
Salmon, W.C. (1984). Scientific Explanation and the Causal Structure of the World. Princeton University Press.
Wunsch, Guillaume, Mouchart, Michel, and Russo, Federica (2014). Functions and mechanisms in structural-modelling explanations. Journal for General Philosophy
of Science. 39

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Mechanisms in the Sciences. A Gentle Introduction

  • 1. Mechanisms in the Sciences: A Gentle Introduction Federica Russo Dipartimento di Studi Umanistici, Università di Ferrara
  • 2. Overview The received view and a possible consensus The rise of mechanisms in phil sci The mechanism debate in the sciences Mechanisms and … Explanation Functions Causal assessment Evidence Practical use: mechanisms and the evidence hierarchy 2
  • 4. Machamer, Darden and Craver: ‘Mechanisms are entities and activities organized such that they are productive of regular changes from start or set-up to finish or termination conditions.’ (Machamer, Darden and Craver 2000 p3.) Glennan: ‘A mechanism for a behavior is a complex system that produces that behavior by the interaction of a number of parts, where the interactions between parts can be characterized by direct, invariant, change-relating generalizations.’ (Glennan 2002b pS344.) Bechtel and Abrahamsen: ‘A mechanism is a structure performing a function in virtue of its component parts, component operations, and their organization. The orchestrated functioning of the mechanism is responsible for one or more phenomena.’ (Bechtel and Abrahamsen 2005 p423.) 4
  • 6. Illari & Williamson: A mechanism for a phenomenon is composed of entities and activities organized so that they are responsible for the phenomenon. Illari & Williamson give up on: Regularity Start up, finishing conditions Complex system Mechanistic explanation: Identification of the phenomenon Identification of entities and activities involved Identification of the organisation 6
  • 8. Physical (causal) connections Process theories of causality Salmon-Dowe approach A development of Russell-Reichenbach (world-lines, at-at theory) Salmon: ‘put the cause into because’ The because is given by the physical, causal process (Ontic explanation) 8
  • 9. Processes in biology? MDC (2000, p. 7): Although we acknowledge the possibility that Salmon’s analysis may be all there is to certain fundamental types of interactions in physics, his analysis is silent as to the character of the productivity in the activities investigated by many other sciences. Mere talk of transmission of a mark or exchange of a conserved quantity does not exhaust what these scientists know about productive activities and about how activities effect regular changes in mechanisms. 9
  • 10. Processes in social science? Russo (2009, p.26): The need to look directly at social scientists’ work was motivated by a possible difference between causal claims that involve reasonably clear causal mechanisms and causal claims that do not. I went through five case studies, and it turned out that none of them contains concepts typical of aleatory causality in order to get an understanding of causal relations—to borrow Salmon’s terminology again. Instead, statistical causality is definitively preferred. However, to prefer statistical causality does not ipso facto rule out mechanisms from the causal talk. […] the question is not whether or not we aim at identifying causal mechanisms, rather, how do we come to identify them. Causal mechanisms are not identified through causal processes and interactions, but, according to the social scientists’ practice, they are statistically modelled. 10
  • 11. MECHANISMS IN THE SCIENCES 11
  • 12. Biology and neuroscience Bechtel, Craver, Darden, MDC, … Functional individuation Mechanistic explanation Decomposition / re-composition … 12
  • 13. Social science Analytical sociologists, Little, Russo (& Mouchart, Wunsch), … Mechanisms and Methodological individualism Statistical modelling Social regularities Human action Social ontology … 13
  • 15. Explanation Ontic and epistemic mechanistic explanations Craver, Bechtel (biology / neuroscience) Illari: ‘reconciliation’ of the ontic and epistemic Explain … how? Organisation, recursive decomposition Backwards, downwards, or upwards 15
  • 16. Aetiological (mechanistic) explanation in social science Structural-modelling explanations 16
  • 17. Self-rated health in the Baltic countries 1994-1999 17
  • 18. What are the causes of self-rated health in the Baltic countries in the ‘90s? X Y Joint probability distribution P(Ed, Soc, Phy, Loc, Psy, Alc, Self) Recursive decomposition: P(Self|Alc, Psy, Loc, Phy) P(Alc|Ed, Psy, Phy) P(Psy|Loc, Soc, Phy) P(Loc|Ed) P(Phy) P(Soc) P(Ed) 18
  • 19. Here, explanation is mechanistic explanation epistemic rather than ontic Mechanistic explanation is successful insofar as it spells out the functioning of the mechanism Spelling out the functioning of the mechanism means identifying the causes, their actions, and their effects
  • 21. Functional architectures and social structures 1. Observe properties of a social system 2. Infer the functional structure 3. Work out the causal mechanism (based on 2) 4. Confirm 2 based on 3
  • 22. 22
  • 23. Functions and functions The role of a mechanism or of a component of a mechanism Craver’s isolated descriptions “But this leaves it ambiguous whether the function is the capacity, described in isolation and simply ‘picked out’ by its contextual role, or, instead, the contextual role by virtue of which the capacity is picked out. A complete description of an item’s role would describe each of these . . . There is a difference, after all, between knowing that spark plugs produce sparks and knowing how that sparking is situated within the complex mechanisms of an engine.” (2001) Description of (the functioning of) a mechanism Cummins’ role functions “x functions as a φ (or, the function of x in s is to φ) relative to an analytical account A of s’s capacity to ψ just in case x is capable of φing in s and A appropriately and adequately accounts for s’s capacity to ψ by, in part, appealing to the capacity of x to φ in s.” (1975)
  • 24. Functions in S-M explanations Functions are role-functions For the mechanism and for its components Mechanisms are described in a contextual way Functions help build the conceptual model They are the theoretical underpinnings of the causal variables A strong conceptual link between causes and functions
  • 26. Causal assessment The Russo-Williamson Thesis To establish a causal claim we typically need evidence of mechanisms and of difference-making An epistemological thesis about evidence for causal claims First formulated for the health sciences, but can be extended to other scientific contexts 26
  • 27. Arguments for RWT Medical practice Preamble of IARC monographs History of medicine Semmelweis and puerperal fever Snow and cholera epidemic Evidence in epidemiology Hill’s guidelines 27
  • 29. Disambiguation Mechanistic evidence vs evidence of mechanisms Difference-making evidence vs evidence of difference-making Evidence vs evidence-gathering methods Difference-making / Mechanisms A conceptual distinction In practice, highly intertwined 29
  • 30. Categories of evidence of mechanism C E C E 1. That there is a specific linking mechanism 2. That there is some kind of linking mechanism or other 3. That there is no linking mechanism C E 30
  • 31. What evidence of mechanism is 1. Evidence of the existence and nature of the entities and activities of a linking mechanism, and their organization. In vitro evidence Animal experiments Analogous mechanisms Autopsy Simulation Even RCTs… 2. Evidence that suggests that a linking mechanism does not or could not exist. Well established knowledge Energy constraints on biochemical mechanisms Comparative studies C E C E C E 31
  • 32. Quality of evidence of mechanism Pluses Each independent method for detection of entity/interaction Each independent research group confirming the result More entities in the mechanism found More links in the mechanism established Analogous mechanisms known Robust, reproducible in different conditions Minuses Single method used for detection of entity/interaction Single research group confirming the result Fewer entities in the mechanism found Fewer links in the mechanism established No analogous mechanisms known Fragile, not reproducible in slightly varying conditions 32
  • 34. Mechanisms in the evidence hierarchy The evidence hierarchy: the pillar of EBM The role of mechanisms (from top to bottom) ‘Reinforced concrete’ 34
  • 35. The analogy of reinforced concrete Evidence: integration, not substitution Difference making helps with masking Mechanisms helps with confounding Integration helps solve more problems, and better Difference making and mechanisms help each other with their respective weaknesses The more integrated, the merrier 35
  • 36. TO SUM UP AND CONCLUDE 36
  • 37. Mechanisms: a fertile field in phil sci Mechanism debate from causation and explanation Usefulness and interest Not for mechanisms per se But for mechanisms and other concepts Mechanisms Are embedded in modelling practices Can help move forward methodological quarrels 37
  • 38. 38
  • 39. Super selected bibliography Bechtel, William (2006). Discovering Cell Mechanisms: the Creation of Modern Cell Biology. Cambridge University Press. Bradford Hill, A. (1965). The environment and disease: association or causation? Proceedings of the Royal Society of Medicine, 58. Clarke, B. (2011). Causality in medicine with particular reference to the viral causation of cancers. PhD thesis, Department of Science and Technology Studies, University College London. Craver, Carl (2001). Role functions, mechanisms and hierarchy, Philosophy of Science, 68(1). Craver, Carl (2007). Explaining the Brain. Clarendon Press. Cummins, Robert (1975). Functional analysis. Journal of Philosophy, 72. Demeulenaere, Pierre (ed.) (2011). Analytical Sociology and Social Mechanisms. Cambridge University Press. Franck R. (ed.) (2002), The explanatory power of models, Kluwer. Glennan, Stuart (1996). Mechanisms and the nature of causation. Erkenntnis, 44, 49–71. Illari, P. M. (2011). Mechanistic evidence: Disambiguating the Russo- Williamson thesis. International Studies in the Philosophy of Science, 25. Illari, Phyllis (2013). Mechanistic explanation: Integrating the ontic and epistemic. Erkenntnis, 78. llari, Phyllis McKay and Williamson, Jon (2010). Function and organization: Comparing the mechanisms of protein synthesis and natural selection. Studies in the History and Philosophy of the Biological and Biomedical Sciences, 41. Illari, Phyllis McKay and Williamson, Jon (2012). What is a mechanism?: Thinking about mechanisms across the sciences. European Journal of the Philosophy of Science, 2. Joffe, Michael (2013). The concept of causation in biology. Erkenntnis, 78. Little, Daniel (2006). Levels of the social. In The philosophy of anthropology and sociology (ed. M. Risjord and S. Turner), pp. 343–371. Elsevier. Machamer, Peter, Darden, Lindley, and Craver, Carl (2000). Thinking about mechasnisms. Philosophy of Science, 67. Mouchart, Michel and Russo, Federica (2011). Causal explanation: Recursive decompositions and mechanisms. In Causality in the sciences (ed. P. M. Illari, F. Russo, and J. Williamson). Oxford University Press. Russo, Federica (2009). Causality and causal modelling in the social sciences. Measuring variations. Methodos Series. Springer. Russo, Federica (2011b). Explaining causal modelling. Or, what a causal model ought to explain. In New Essays in Logic and Philosophy of Science (ed. M. D’Agostino, G. Giorello, F. Laudisa, T. Pievani, and C. Sinigaglia). College Publications. Russo, F. and Williamson, J. (2007). Interpreting causality in the health sciences. International Studies in the Philosophy of Science, 21(2). Ruzzene, Attilia (2012). Meccanismi sociali nelle scienze sociali. APhEx, 5. Salmon, W.C. (1984). Scientific Explanation and the Causal Structure of the World. Princeton University Press. Wunsch, Guillaume, Mouchart, Michel, and Russo, Federica (2014). Functions and mechanisms in structural-modelling explanations. Journal for General Philosophy of Science. 39