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MATLAB WORKSHOP

   FOR
    EE, ECE, CS, Geophysics, B
    ioinformatics, Mechanical
    Engineering
Outline

• Introduction to MATLAB
  – Basics & Examples


• Image Processing with MATLAB
  – Basics & Examples
What is MATLAB?
• MATLAB = Matrix Laboratory

• “MATLAB is a high-level language and
  interactive environment that enables you to
  perform computationally intensive tasks faster
  than with traditional programming languages
  such as C, C++ and Fortran.”
  (www.mathworks.com)

• MATLAB is an interactive, interpreted language
  that is designed for fast numerical matrix
  calculations
The MATLAB Environment
           • MATLAB window
             components:
             Workspace
                > Displays all the defined
                  variables
             Command Window
                > To execute commands
                  in the MATLAB
                  environment
             Command History
                > Displays record of the
                  commands used
             File Editor Window
                 > Define your functions
MATLAB Help
      • MATLAB Help is an
        extremely powerful
        assistance to learning
        MATLAB

      • Help not only contains the
        theoretical
        background, but also
        shows demos for
        implementation

      • MATLAB Help can be
        opened by using the
        HELP pull-down menu
MATLAB Help (cont.)
          • Any command description
            can be found by typing
            the command in the
            search field

          • As shown above, the
            command to take square
            root (sqrt) is searched

          • We can also utilize
            MATLAB Help from the
            command window as
            shown
More about the Workspace
• who, whos – current variables in the
  workspace
• save – save workspace variables to *.mat
  file
• load – load variables from *.mat file
• clear – clear workspace variables

- CODE
Matrices in MATLAB
• Matrix is the main MATLAB data type
• How to build a matrix?
  – A=[1 2 3; 4 5 6; 7 8 9];
  – Creates matrix A of size 3 x 3
• Special matrices:
  – zeros(n,m), ones(n,m), eye(n,m), r
    and(), randn()
Basic Operations on Matrices
• All operators in MATLAB are defined on
  matrices: +, -
  , *, /, ^, sqrt, sin, cos, etc.
• Element-wise operators defined with a
  preceding dot: .*, ./, .^
• size(A) – size vector
• sum(A) – columns’ sums vector
• sum(sum(A)) – sum of all the elements
- CODE
Variable Name in Matlab
• Variable naming rules
       - must be unique in the first 63 characters
       - must begin with a letter
       - may not contain blank spaces or other types of punctuation
      - may contain any combination of letters, digits, and
  underscores
       - are case-sensitive
       - should not use Matlab keyword
• Pre-defined variable names
    • pi
Logical Operators

• ==, <, >, (not equal) ~=, (not) ~

• find(‘condition’) – Returns indexes
  of A’s elements that satisfy the condition
Logical Operators (cont.)
• Example:
>>A=[7 3 5; 6 2 1], Idx=find(A<4)
 A=
      7 3 5
      6 2 1
 Idx=
      3
      4
      6
Flow Control
• MATLAB has five flow control constructs:
  – if statement
  – switch statement
  – for loop
  – while loop
  – break statement
if
• IF statement condition
  – The general form of the IF statement is
     IF expression
       statements
     ELSEIF expression
       statements
     ELSE
       statements
     END
switch
• SWITCH – Switch among several cases based
  on expression
• The general form of SWITCH statement is:
  SWITCH switch_expr
     CASE case_expr,
        statement, …, statement
     CASE {case_expr1, case_expr2, case_expr3, …}
        statement, …, statement
        …
     OTHERWISE
        statement, …, statement
  END
switch (cont.)
• Note:
  – Only the statements between the matching
    CASE and the next CASE, OTHERWISE, or END
    are executed
  – Unlike C, the SWITCH statement does not fall
    through (so BREAKs are unnecessary)
for
• FOR repeats statements a specific
  number of times

• The general form of a FOR statement is:
  FOR variable=expr
    statements
  END
Code
   Assume k has already been assigned a value.
    Create the Hilbert matrix, using zeros to
    preallocate the matrix to conserve memory:
    a = zeros(k,k) % Preallocate matrix
    for m = 1:k
       for n = 1:k
          a(m,n) = 1/(m+n -1);
       end
    end
while
• WHILE repeats statements an indefinite
  number of times
• The general form of a WHILE statement is:
  WHILE expression
    statements
  END
Scripts and Functions
• There are two kinds of M-files:

  – Scripts, which do not accept input arguments
    or return output arguments. They operate on
    data in the workspace


  – Functions, which can accept input arguments
    and return output arguments. Internal
    variables are local to the function
Functions in MATLAB (cont.)
• Example:
   – A file called STAT.M:
       function [mean, stdev]=stat(x)
       %STAT Interesting statistics.
       n=length(x);
       mean=sum(x)/n;
       stdev=sqrt(sum((x-mean).^2)/n);
   – Defines a new function called STAT that calculates
     the mean and standard deviation of a vector. Function
     name and file name should be the SAME!
Visualization and Graphics
•   plot(x,y),plot(x,sin(x)) – plot 1D function
•   figure, figure(k) – open a new figure
•   hold on, hold off – refreshing
•   axis([xmin xmax ymin ymax]) – change axes
•   title(‘figure titile’) – add title to figure
•   mesh(x_ax,y_ax,z_mat) – view surface
•   contour(z_mat) – view z as topo map
•   subplot(3,1,2) – locate several plots in figure
Saving your Work
• save mysession
     % creates mysession.mat with all variables
• save mysession a b
     % save only variables a and b
• clear all
     % clear all variables
• clear a b
     % clear variables a and b
• load mysession
     % load session
Outline

• Introduction to MATLAB
  – Basics & Examples


• Image Processing with MATLAB
  – Basics & Examples
What is the Image Processing Toolbox?

• The Image Processing Toolbox is a collection of
  functions that extend the capabilities of the MATLAB’s
  numeric computing environment. The toolbox supports a
  wide range of image processing operations, including:
   –   Geometric operations
   –   Neighborhood and block operations
   –   Linear filtering and filter design
   –   Transforms
   –   Image analysis and enhancement
   –   Binary image operations
   –   Region of interest operations
Images in MATLAB
• MATLAB can import/export            • Data types in MATLAB
  several image formats:                 – Double (64-bit double-precision
   – BMP (Microsoft Windows                floating point)
     Bitmap)                             – Single (32-bit single-precision
   – GIF (Graphics Interchange             floating point)
     Files)                              – Int32 (32-bit signed integer)
   – HDF (Hierarchical Data Format)      – Int16 (16-bit signed integer)
   – JPEG (Joint Photographic            – Int8 (8-bit signed integer)
     Experts Group)                      – Uint32 (32-bit unsigned integer)
   – PCX (Paintbrush)                    – Uint16 (16-bit unsigned integer)
   – PNG (Portable Network               – Uint8 (8-bit unsigned integer)
     Graphics)
   – TIFF (Tagged Image File
     Format)
   – XWD (X Window Dump)
   – raw-data and other types of
     image data
Images in MATLAB
• Binary images : {0,1}
• Intensity images : [0,1] or uint8, double etc.
• RGB images : m × n × 3
• Multidimensional images: m × n × p (p is the number of layers)
Image Import and Export
• Read and write images in Matlab
   img = imread('apple.jpg');
   dim = size(img);
   figure;
   imshow(img);
   imwrite(img, 'output.bmp', 'bmp');

• Alternatives to imshow
   imagesc(I)
   imtool(I)
   image(I)
Images and Matrices
                                                   [0, 0]
How to build a matrix
(or image)?                             o
Intensity Image:




                         Row 1 to 256
row = 256;
col = 256;
img = zeros(row, col);
img(100:105, :) = 0.5;
img(:, 100:105) = 1;
figure;
                                                                    o
imshow(img);
                                            Column 1 to 256
                                                              [256, 256]
Images and Matrices
Binary Image:

row = 256;
col = 256;
img = rand(row,
col);
img = round(img);
figure;
imshow(img);
Image Display
•   image - create and display image object
•   imagesc - scale and display as image
•   imshow - display image
•   colorbar - display colorbar
•   getimage - get image data from axes
•   truesize - adjust display size of image
•   zoom - zoom in and zoom out of 2D plot
Image Conversion
•   gray2ind - intensity image to index image
•   im2bw - image to binary
•   im2double - image to double precision
•   im2uint8 - image to 8-bit unsigned integers
•   im2uint16 - image to 16-bit unsigned integers
•   ind2gray - indexed image to intensity image
•   mat2gray - matrix to intensity image
•   rgb2gray - RGB image to grayscale
•   rgb2ind - RGB image to indexed image
Image Operations
•   RGB image to gray image
•   Image resize
•   Image crop
•   Image rotate
•   Image histogram
•   Image histogram equalization
•   Image DCT/IDCT
•   Convolution
Outline

• Introduction to MATLAB
  – Basics & Examples
• Image Processing with MATLAB
  – Basics & Examples
Examples working with Images
           (1/2)
         Blending two images
Examples working with Images
           (2/2)
     Sobel descriptor to detect object edge
Performance Issues
•   The idea: MATLAB is
    – very fast on vector and matrix operations
    – Correspondingly slow with loops



•   Try to avoid loops
•   Try to vectorize your code
    http://www.mathworks.com/support/tech-
    notes/1100/1109.html
Vectorize Loops
•   Example
     – Given image matrices, A and B, of the same size (540*380), blend
       these two images
       apple = imread(‘apple.jpg');
       orange = imread(‘orange.jpg’);
•   Poor Style
      % measure performance using stopwatch timer
      tic
      for i = 1 : size(apple, 1)
         for j = 1 : size(apple, 2)
                for k = 1 : size(apple, 3)
                      output(i, j, k) = (apple(i, j, k) +
    orange(i, j, k))/2;
                end
         end
      end
      toc
•   Elapsed time is 0.138116 seconds
Vectorize Loops (cont.)
•   Example
     –   Given image matrices, A and B, of the same size (600*400), blend
         these two images
         apple = imread(‘apple.jpg');
         orange = imread(‘orange.jpg’);

•   Better Style
     tic % measure performance using stopwatch timer
     Output = (apple + orange)/2;
     toc
     •   Elapsed time is 0.099802 seconds

•   Computation is faster!
THE END

• Thanks for your attention! 

• Questions?

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MATLAB & Image Processing

  • 1. MATLAB WORKSHOP  FOR EE, ECE, CS, Geophysics, B ioinformatics, Mechanical Engineering
  • 2. Outline • Introduction to MATLAB – Basics & Examples • Image Processing with MATLAB – Basics & Examples
  • 3. What is MATLAB? • MATLAB = Matrix Laboratory • “MATLAB is a high-level language and interactive environment that enables you to perform computationally intensive tasks faster than with traditional programming languages such as C, C++ and Fortran.” (www.mathworks.com) • MATLAB is an interactive, interpreted language that is designed for fast numerical matrix calculations
  • 4. The MATLAB Environment • MATLAB window components: Workspace > Displays all the defined variables Command Window > To execute commands in the MATLAB environment Command History > Displays record of the commands used File Editor Window > Define your functions
  • 5. MATLAB Help • MATLAB Help is an extremely powerful assistance to learning MATLAB • Help not only contains the theoretical background, but also shows demos for implementation • MATLAB Help can be opened by using the HELP pull-down menu
  • 6. MATLAB Help (cont.) • Any command description can be found by typing the command in the search field • As shown above, the command to take square root (sqrt) is searched • We can also utilize MATLAB Help from the command window as shown
  • 7. More about the Workspace • who, whos – current variables in the workspace • save – save workspace variables to *.mat file • load – load variables from *.mat file • clear – clear workspace variables - CODE
  • 8. Matrices in MATLAB • Matrix is the main MATLAB data type • How to build a matrix? – A=[1 2 3; 4 5 6; 7 8 9]; – Creates matrix A of size 3 x 3 • Special matrices: – zeros(n,m), ones(n,m), eye(n,m), r and(), randn()
  • 9. Basic Operations on Matrices • All operators in MATLAB are defined on matrices: +, - , *, /, ^, sqrt, sin, cos, etc. • Element-wise operators defined with a preceding dot: .*, ./, .^ • size(A) – size vector • sum(A) – columns’ sums vector • sum(sum(A)) – sum of all the elements - CODE
  • 10. Variable Name in Matlab • Variable naming rules - must be unique in the first 63 characters - must begin with a letter - may not contain blank spaces or other types of punctuation - may contain any combination of letters, digits, and underscores - are case-sensitive - should not use Matlab keyword • Pre-defined variable names • pi
  • 11. Logical Operators • ==, <, >, (not equal) ~=, (not) ~ • find(‘condition’) – Returns indexes of A’s elements that satisfy the condition
  • 12. Logical Operators (cont.) • Example: >>A=[7 3 5; 6 2 1], Idx=find(A<4) A= 7 3 5 6 2 1 Idx= 3 4 6
  • 13. Flow Control • MATLAB has five flow control constructs: – if statement – switch statement – for loop – while loop – break statement
  • 14. if • IF statement condition – The general form of the IF statement is IF expression statements ELSEIF expression statements ELSE statements END
  • 15. switch • SWITCH – Switch among several cases based on expression • The general form of SWITCH statement is: SWITCH switch_expr CASE case_expr, statement, …, statement CASE {case_expr1, case_expr2, case_expr3, …} statement, …, statement … OTHERWISE statement, …, statement END
  • 16. switch (cont.) • Note: – Only the statements between the matching CASE and the next CASE, OTHERWISE, or END are executed – Unlike C, the SWITCH statement does not fall through (so BREAKs are unnecessary)
  • 17. for • FOR repeats statements a specific number of times • The general form of a FOR statement is: FOR variable=expr statements END
  • 18. Code  Assume k has already been assigned a value. Create the Hilbert matrix, using zeros to preallocate the matrix to conserve memory: a = zeros(k,k) % Preallocate matrix for m = 1:k for n = 1:k a(m,n) = 1/(m+n -1); end end
  • 19. while • WHILE repeats statements an indefinite number of times • The general form of a WHILE statement is: WHILE expression statements END
  • 20. Scripts and Functions • There are two kinds of M-files: – Scripts, which do not accept input arguments or return output arguments. They operate on data in the workspace – Functions, which can accept input arguments and return output arguments. Internal variables are local to the function
  • 21. Functions in MATLAB (cont.) • Example: – A file called STAT.M: function [mean, stdev]=stat(x) %STAT Interesting statistics. n=length(x); mean=sum(x)/n; stdev=sqrt(sum((x-mean).^2)/n); – Defines a new function called STAT that calculates the mean and standard deviation of a vector. Function name and file name should be the SAME!
  • 22. Visualization and Graphics • plot(x,y),plot(x,sin(x)) – plot 1D function • figure, figure(k) – open a new figure • hold on, hold off – refreshing • axis([xmin xmax ymin ymax]) – change axes • title(‘figure titile’) – add title to figure • mesh(x_ax,y_ax,z_mat) – view surface • contour(z_mat) – view z as topo map • subplot(3,1,2) – locate several plots in figure
  • 23. Saving your Work • save mysession % creates mysession.mat with all variables • save mysession a b % save only variables a and b • clear all % clear all variables • clear a b % clear variables a and b • load mysession % load session
  • 24. Outline • Introduction to MATLAB – Basics & Examples • Image Processing with MATLAB – Basics & Examples
  • 25. What is the Image Processing Toolbox? • The Image Processing Toolbox is a collection of functions that extend the capabilities of the MATLAB’s numeric computing environment. The toolbox supports a wide range of image processing operations, including: – Geometric operations – Neighborhood and block operations – Linear filtering and filter design – Transforms – Image analysis and enhancement – Binary image operations – Region of interest operations
  • 26. Images in MATLAB • MATLAB can import/export • Data types in MATLAB several image formats: – Double (64-bit double-precision – BMP (Microsoft Windows floating point) Bitmap) – Single (32-bit single-precision – GIF (Graphics Interchange floating point) Files) – Int32 (32-bit signed integer) – HDF (Hierarchical Data Format) – Int16 (16-bit signed integer) – JPEG (Joint Photographic – Int8 (8-bit signed integer) Experts Group) – Uint32 (32-bit unsigned integer) – PCX (Paintbrush) – Uint16 (16-bit unsigned integer) – PNG (Portable Network – Uint8 (8-bit unsigned integer) Graphics) – TIFF (Tagged Image File Format) – XWD (X Window Dump) – raw-data and other types of image data
  • 27. Images in MATLAB • Binary images : {0,1} • Intensity images : [0,1] or uint8, double etc. • RGB images : m × n × 3 • Multidimensional images: m × n × p (p is the number of layers)
  • 28. Image Import and Export • Read and write images in Matlab img = imread('apple.jpg'); dim = size(img); figure; imshow(img); imwrite(img, 'output.bmp', 'bmp'); • Alternatives to imshow imagesc(I) imtool(I) image(I)
  • 29. Images and Matrices [0, 0] How to build a matrix (or image)? o Intensity Image: Row 1 to 256 row = 256; col = 256; img = zeros(row, col); img(100:105, :) = 0.5; img(:, 100:105) = 1; figure; o imshow(img); Column 1 to 256 [256, 256]
  • 30. Images and Matrices Binary Image: row = 256; col = 256; img = rand(row, col); img = round(img); figure; imshow(img);
  • 31. Image Display • image - create and display image object • imagesc - scale and display as image • imshow - display image • colorbar - display colorbar • getimage - get image data from axes • truesize - adjust display size of image • zoom - zoom in and zoom out of 2D plot
  • 32. Image Conversion • gray2ind - intensity image to index image • im2bw - image to binary • im2double - image to double precision • im2uint8 - image to 8-bit unsigned integers • im2uint16 - image to 16-bit unsigned integers • ind2gray - indexed image to intensity image • mat2gray - matrix to intensity image • rgb2gray - RGB image to grayscale • rgb2ind - RGB image to indexed image
  • 33. Image Operations • RGB image to gray image • Image resize • Image crop • Image rotate • Image histogram • Image histogram equalization • Image DCT/IDCT • Convolution
  • 34. Outline • Introduction to MATLAB – Basics & Examples • Image Processing with MATLAB – Basics & Examples
  • 35. Examples working with Images (1/2) Blending two images
  • 36. Examples working with Images (2/2) Sobel descriptor to detect object edge
  • 37. Performance Issues • The idea: MATLAB is – very fast on vector and matrix operations – Correspondingly slow with loops • Try to avoid loops • Try to vectorize your code http://www.mathworks.com/support/tech- notes/1100/1109.html
  • 38. Vectorize Loops • Example – Given image matrices, A and B, of the same size (540*380), blend these two images apple = imread(‘apple.jpg'); orange = imread(‘orange.jpg’); • Poor Style % measure performance using stopwatch timer tic for i = 1 : size(apple, 1) for j = 1 : size(apple, 2) for k = 1 : size(apple, 3) output(i, j, k) = (apple(i, j, k) + orange(i, j, k))/2; end end end toc • Elapsed time is 0.138116 seconds
  • 39. Vectorize Loops (cont.) • Example – Given image matrices, A and B, of the same size (600*400), blend these two images apple = imread(‘apple.jpg'); orange = imread(‘orange.jpg’); • Better Style tic % measure performance using stopwatch timer Output = (apple + orange)/2; toc • Elapsed time is 0.099802 seconds • Computation is faster!
  • 40. THE END • Thanks for your attention!  • Questions?