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A vocabulary based on agriculture activity ontology to
facilitate incompatibility among agriculture IT systems
Hideaki Takeda, Sungmin Joo
Daisuke Horyu, Akane Takezaki
National Agriculture and Food Research
Organization (NARO)
National Institute of Informatics (NII)
Interest	
  Group	
  on	
  Agricultural	
  Data	
  (IGAD),	
  Pre-­‐Mee9ng	
  Agenda,	
  Research	
  Data	
  Alliance	
  (RDA)	
  
28th	
  to	
  29th	
  February	
  2016,	
  Yayoi	
  Auditorium/Annex,	
  Faculty	
  of	
  Agriculture,	
  University	
  of	
  Tokyo,	
  Tokyo	
  (Japan)	
  
Standardization of Agricultural Activities
n  Background
n  Issues
n  Purpose
Agricultural IT systems are widely adopted to manage and record activities in the
fields efficiently. Interoperability among these systems is needed to integrate and
analyze such records to improve productivity of agriculture.
To provide the standard vocabulary by defining the ontology for agricultural activity
No standards are provided for names
of works so that each system vender
defines them independently. It
prevents federation and integration
of these systems and their data.
hPp://www.toukei.maff.go.jp/dijest/kome/kome05/kome05.html	
しろかき
“Puddling”	
砕土
“Soil	
  crashing”	
代かき
“Puddling”	
代掻き
“Puddling”	
代掻き作業
“Puddling	
  Ac3vity”	
荒代(かじり)
“Rough	
  Puddling”
荒代かき
“Rough	
  Puddling”	
整地
“land	
  preparea3on”	
均平化
“land	
  lebeling”
Standardization of Agricultural Activities
n  Thesaurus
A system to organize words by synonym, narrower/broader, and related relationship.
(ex. AGROVOC)
harvesting topping(beets)
baling
gleaning
mechanical harvesting
mowing
AGROVOC
.	
  .	
  .	
Search related words efficiently
- Narrower/broader relationship is
not clearly defined. So relationship
among bother words are often
mixed and misunderstood.
relationship
between
siblings
Lessons learnt – What should be considered
n  Define hierarchy clearly
n  Accept various synonymous words
Hierarchy is convenient for human to understand and for computers to process. But it
often be confused by mixing different criteria on relationship among concepts/words. It
causes difficulty when adding new concepts/words and when integrating different
hierarchies.
Names for a single concept may be multiple by region and by crop
Define relationship clearly between upper and
lower concepts as basis of classification
Clarify an entry word and their synonyms for each concept
Thesaurus and Ontology
n  Thesaurus
n  Ontology
A system to organize words by synonym, narrower/broader, and related relationship.
(ex. AGROVOC)
harvesting topping(beets)
baling
gleaning
mechanical harvesting
mowing
AGROVOC
.	
  .	
  .	
Search related words efficiently
- Narrower/broader relationship is
not clearly defined. So relationship
among bother words are often
mixed and misunderstood.
A system to define relationship among concepts
-  Hierarchy by generalization/
specialization relationship
-  Property inheritance
- Separate concept and representation
harvesting mechanical harvesting
manual harvesting
[means].	
  .	
  .	
Harvest	
 Harvest	
Harvest	
Inherit
byMachine	
manually	
+
+
relationship
between
siblings
Representa9on:	
  ”Harves9ng”	
[means][Act]
Designing “Agricultural Activity Ontology”
The ontology to provide semantics for agricultural activity names
 
ver 1.10 : published on February 12, 2016. 330 words collected, new words are collected
ver 1.00 : published on November 2, 2015. 301 words collected, defined with Description
Logics, introduction of property
ver 0.94 : published on May 12, 2015. 185 words collected.
http://www.cavoc.org/ http://www.cavoc.org/aao
Designing Agricultural Activity Ontology
n  Define activity concepts
n  Define hierarchy
Activity for Seeding:
activity to sow seeds on fields for seed propagation
Purpose: seed propagation
Place : field
Target : seed
Act : sow
“Activity for
Seeding” is	
Define activities with properties
and their values
The hierarchy of activities is organized by property
-  New properties and their values are added
-  “purpose”, “act”, “target”, “place”, “means”, “season”, and “crop” in
order.
-  Property values are specialized
n  Formalization by Description Logics
Crop production activity
Activity for crop growth
purpose:crop production
purpose:crop growth
Agricultural activity
Designing Agricultural Activity Ontology
Activity for propagation
control
Activity for seed
propagation
purpose:propagation control
purpose:seed propagation
Activity for seeding
act : sow
target:seed
place:field
Activity for Seed
propagation
Activity for seeding
n  Differentiate concepts by property
purpose : seed propagation
place : paddy field
target : seed
act : sow
crop:rice
purpose : seed propagation purpose : seed propagation
place : field
target : seed
act : sow
Agricultural activity  >…> Activity for seed propagation > Activity for seeding
Designing Agricultural Activity Ontology
purpose : seed propagation
place : well-drained paddy field
target : seed
act : sow
crop:rice
Direct sowing of rice on well-drained paddy field Direct seeding in flooded paddy field
Well-­‐drained	
  paddy	
  field	
  <	
  field	
   paddy	
  field	
  <	
  field	
  
Designing Agricultural Activity Ontology
Ac9vity	
  for	
  seeding	
   Direct seeding in flooded paddy field
Direct sowing of rice on well-drained paddy field
Seeding on a nursery box
n  Management by Protégé
Designing Agricultural Activity Ontology
n  Polysemic concepts
l  Definition of agriculture activities with multiple purposes or other properties.
[disjunction form]
[conjunction form]
Activity for puddling
Subsoil breaking
Activity for soil
crushing
Activity for preparation
of field
Activity for water
retention
Activity for water control
Activity for land
leveling
Polysemic
relationship
Soil crushing by
harrows
Activity for puddling 
purpose : soil crushing
purpose : water retention
purpose : land leveling	
  
Designing Agricultural Activity Ontology
Activity for water retention
Activity for land leveling
Activity for soil crushing
Activity for puddling 
n  Management by Protégé - Polysemic concepts
Designing Agricultural Activity Ontology
n  Agriculture Activity Ontology
l  ver 1.10 : published on February 12, 2016.
330 words collected
作物生産作業	
  	
  	
  	
(2016/02/12)	
 作物生育作業	
  	
 crop production activity	
 	
  	
 繁殖制御作業	
 activity for propagation	
 	
  	
 栄養成長制御作業	
 activity in the vegetative growth stage	
 	
  	
 生殖成長制御作業	
 activity in the reproductive growth stage	
 	
 環境制御作業	
  	
 activity for environment control	
 	
  	
 土壌制御作業	
 activity for soil control	
 	
  	
 気候制御作業	
 activity for climate control	
 	
  	
 水分制御作業	
 activity for water control	
 	
  	
 生物制御作業	
 activity for biotic control	
 	
  	
 化学成分制御作業	
 activity for chemical control	
 	
 収穫後作業	
  	
 post production activity	
 	
  	
 収穫作業	
 activity for harvesting	
 	
  	
 収穫物集約作業	
  	
 	
  	
 調製作業	
 activity for processing	
 	
  	
 熟成作業	
  	
 	
  	
 計量作業	
  	
 	
  	
 鮮度保持作業	
 activity for extending shelf-life	
 	
  	
 包装作業

	
activity for wrapping	
 	
 作物生産支援作業	
 	
 indirect activity	
 	
  	
 機資材準備作業	
 activity for preparing materials	
 	
  	
 清掃	
 activity for cleaning	
 	
  	
 運搬

	
activity for transport	
 	
  	
 収納作業	
  	
 	
  	
 モニタリング	
 activity for monitoring	
 	
 施設機材管理作業	
 activity for maintaining farm equipment	
営農管理作業	
  	
  	
 administrative activity	
 	
 経営管理作業	
  	
 activity for business administration	
 	
  	
 情報収集	
 activity for collecting information	
 	
  	
 会計管理	
 activity for account management	
 	
  	
 労働管理	
 activity for labor management	
 	
  	
 マーケティング	
 activity for marketing	
 	
  	
 計画策定	
 activity for planning	
 	
  	
 評価作業	
 activity for evaluation	
 	
  	
 資材購入
 activity for material purchase
Applying Agricultural Activity Ontology
n  URI
Give a unique URI for each concept
[Japanese hiragana]
Activity for seed propagation
Direct seeding in flooded paddy field
[act] sow
http://cavoc.org/aao/ns/1/は種
Direct sowing of rice on well-drained paddy field
[target] seed
Seeding on a nursery box
Applying Agricultural Activity Ontology
n  Vocabulary Generation
Vocabulary is generated by processing the ontology. Vocabulary consists of terms,
(non-terminological) concepts and properties.
- Terms: Names of activities used by farmers, researchers, and so on.
- (Non-terminological) concepts: Concepts used to classify terms.
- Properties: Concepts used to define activity concepts.
[act] mix
Plowing green manure
Applying organic matter
[target] green manure
[act] apply
[target] organic matter
Applying Agricultural Activity Ontology
n  Generation of human-readable definition for terms and concepts
Word list
Property list
Concept list
Definition of a concept is generated with properties and its hierarchy
[act] mix
Plowing green manure
[target] green manure
A green manure is a fertilizer
“Activity for suppression of pest animals with control of wild animals as purpose,
with chemical means as means”
“Plowing green manure is Applying organic matter,
mixed with green manure”
n  Reasoning by Ontology
l  Infer the most feasible upper concept for
the given constraints for a new words
Applying Agricultural Activity Ontology
Activity for biotic
control
Activity for
suppression of
pest animals
Activity for suppression
of pest animals by
physical means
control of pest
animals
Physical
means
means
(0,1)
purpose
(0,1)
Biotic control
purpose(0,1)
Activity for suppression
of pest animals by
chemical means
Chemical
means
purpose
(0,1)
means
(0,1)
Making a
scarecrow‘
suppression of
pest animals
Purpose
(0,1)
build
act
(0,1)
scarecrow
target
(0,1)
Physical
means
Means
(0,1)
?	
 Example of「Making a scarecrow」
?	
  
suppression of
pest animals
n  Reasoning by Ontology
l  Infer the most feasible upper concept for
the given constraints for a new words
Applying Agricultural Activity Ontology
かかし作り
物理的手段
means
(0,1)
means
(0,1)
Inference with SWCLOS
[1]	
  Seiji	
  Koide,	
  Theory	
  and	
  Implementa9on	
  of	
  Object	
  Oriented	
  Seman9c	
  Web	
  Language,	
  
PhD	
  Thesis,	
  Graduate	
  University	
  for	
  Advance	
  Studies,	
  2011	
[1]	
[1]	
Activity for biotic
control
Activity for
suppression of
pest animals
Activity for suppression
of pest animals by
physical means
control of pest
animals
Physical
means
means
(0,1)
purpose
(0,1)
Biotic control
purpose(0,1)
suppression of
pest animals
Activity for suppression
of pest animals by
chemical means
Chemical
means
purpose
(0,1)
means
(0,1)
Making a
scarecrow
build
act
(0,1)
scarecrow
target
(0,1)
Future work
n  Addition and verification of new words
Survey more documents and domains to collect words. By adding these words,
properties and their values will be verified and extended if necessary.
n  Generation of crop-specific ontologies
AAO can generate crop-specific ontologies by specifying values of “crop” property. In
order to complete these ontologies, concepts and properties may be added. Crop
ontology should be provided too.
Ac9vity	
  for	
  
harves9ng	
Ac9vity	
  for	
  wrap	
  silage	
Ac9vity	
  for	
  digging	
Ac9vity	
  for	
  rice	
  reaping	
  
by	
  combine	
Ac9vity	
  for	
  rice	
  reaping	
  
by	
  binder	
Ac9vity	
  for	
  rice	
  reaping	
  
by	
  hand	
Ac9vity	
  for	
  rice	
  reaping	
Ac9vity	
  for	
  reaping	
rice	
 rice	
rice	
rice	
forage	
  and	
  manure	
  crop	
root	
  vegetable	
Agriculture Activity Ontology (AAO)
AAO for Race
Ac9vity	
  for	
  
harves9ng	
Ac9vity	
  for	
  rice	
  reaping	
  
by	
  combine	
Ac9vity	
  for	
  rice	
  reaping	
  
by	
  binder	
Ac9vity	
  for	
  rice	
  reaping	
  
by	
  hand	
Ac9vity	
  for	
  rice	
  reaping	
Ac9vity	
  for	
  reaping	
Ac9vity	
  for	
  
harves9ng	
 Ac9vity	
  for	
  wrap	
  silage	
Ac9vity	
  for	
  
harves9ng	
 Ac9vity	
  for	
  digging	
AAO for forage and manure crop
AAO for Root Vegetables
root	
  vegetable	
forage	
  and	
  manure	
  crop	
When	
  crop	
  property	
  
is	
  “Race”,	
 rice	
When	
  crop	
  property	
  is	
  “forage	
  and	
  manure	
  
crop”	
When	
  crop	
  property	
  is	
  “root	
  
vegetable”
http://cavoc.org/	
Common Agricultural VOCabulary
Agriculture Activity Ontology (AAO) ver 1.10
http://cavoc.org/aao/	
Summary	
•  We proposed the ontology for agriculture activity and the vocabulary based on
it in order to increase interoperability among agriculture management systems.
-  The ontology provides clear definition for concepts and hierarchy among
concepts, separation between names and concepts, and functions to define
complex concepts.
-  The ontology is defined with Description Logics so that logical inference is
provided.
-  Future work includes addition and verification of new words, generation of crop-
specific ontologies.
-  We will further apply our approach to crop, fertilizer, and agricultural chemicals
to extend the vocabulary.

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A vocabulary based on agriculture activity ontology to facilitate incompatibility among agriculture IT systems

  • 1. A vocabulary based on agriculture activity ontology to facilitate incompatibility among agriculture IT systems Hideaki Takeda, Sungmin Joo Daisuke Horyu, Akane Takezaki National Agriculture and Food Research Organization (NARO) National Institute of Informatics (NII) Interest  Group  on  Agricultural  Data  (IGAD),  Pre-­‐Mee9ng  Agenda,  Research  Data  Alliance  (RDA)   28th  to  29th  February  2016,  Yayoi  Auditorium/Annex,  Faculty  of  Agriculture,  University  of  Tokyo,  Tokyo  (Japan)  
  • 2. Standardization of Agricultural Activities n  Background n  Issues n  Purpose Agricultural IT systems are widely adopted to manage and record activities in the fields efficiently. Interoperability among these systems is needed to integrate and analyze such records to improve productivity of agriculture. To provide the standard vocabulary by defining the ontology for agricultural activity No standards are provided for names of works so that each system vender defines them independently. It prevents federation and integration of these systems and their data. hPp://www.toukei.maff.go.jp/dijest/kome/kome05/kome05.html しろかき “Puddling” 砕土 “Soil  crashing” 代かき “Puddling” 代掻き “Puddling” 代掻き作業 “Puddling  Ac3vity” 荒代(かじり) “Rough  Puddling” 荒代かき “Rough  Puddling” 整地 “land  preparea3on” 均平化 “land  lebeling”
  • 3. Standardization of Agricultural Activities n  Thesaurus A system to organize words by synonym, narrower/broader, and related relationship. (ex. AGROVOC) harvesting topping(beets) baling gleaning mechanical harvesting mowing AGROVOC .  .  . Search related words efficiently - Narrower/broader relationship is not clearly defined. So relationship among bother words are often mixed and misunderstood. relationship between siblings
  • 4. Lessons learnt – What should be considered n  Define hierarchy clearly n  Accept various synonymous words Hierarchy is convenient for human to understand and for computers to process. But it often be confused by mixing different criteria on relationship among concepts/words. It causes difficulty when adding new concepts/words and when integrating different hierarchies. Names for a single concept may be multiple by region and by crop Define relationship clearly between upper and lower concepts as basis of classification Clarify an entry word and their synonyms for each concept
  • 5. Thesaurus and Ontology n  Thesaurus n  Ontology A system to organize words by synonym, narrower/broader, and related relationship. (ex. AGROVOC) harvesting topping(beets) baling gleaning mechanical harvesting mowing AGROVOC .  .  . Search related words efficiently - Narrower/broader relationship is not clearly defined. So relationship among bother words are often mixed and misunderstood. A system to define relationship among concepts -  Hierarchy by generalization/ specialization relationship -  Property inheritance - Separate concept and representation harvesting mechanical harvesting manual harvesting [means].  .  . Harvest Harvest Harvest Inherit byMachine manually + + relationship between siblings Representa9on:  ”Harves9ng” [means][Act]
  • 6. Designing “Agricultural Activity Ontology” The ontology to provide semantics for agricultural activity names   ver 1.10 : published on February 12, 2016. 330 words collected, new words are collected ver 1.00 : published on November 2, 2015. 301 words collected, defined with Description Logics, introduction of property ver 0.94 : published on May 12, 2015. 185 words collected. http://www.cavoc.org/ http://www.cavoc.org/aao
  • 7. Designing Agricultural Activity Ontology n  Define activity concepts n  Define hierarchy Activity for Seeding: activity to sow seeds on fields for seed propagation Purpose: seed propagation Place : field Target : seed Act : sow “Activity for Seeding” is Define activities with properties and their values The hierarchy of activities is organized by property -  New properties and their values are added -  “purpose”, “act”, “target”, “place”, “means”, “season”, and “crop” in order. -  Property values are specialized
  • 8. n  Formalization by Description Logics Crop production activity Activity for crop growth purpose:crop production purpose:crop growth Agricultural activity Designing Agricultural Activity Ontology Activity for propagation control Activity for seed propagation purpose:propagation control purpose:seed propagation Activity for seeding act : sow target:seed place:field Activity for Seed propagation Activity for seeding
  • 9. n  Differentiate concepts by property purpose : seed propagation place : paddy field target : seed act : sow crop:rice purpose : seed propagation purpose : seed propagation place : field target : seed act : sow Agricultural activity  >…> Activity for seed propagation > Activity for seeding Designing Agricultural Activity Ontology purpose : seed propagation place : well-drained paddy field target : seed act : sow crop:rice Direct sowing of rice on well-drained paddy field Direct seeding in flooded paddy field Well-­‐drained  paddy  field  <  field   paddy  field  <  field  
  • 10. Designing Agricultural Activity Ontology Ac9vity  for  seeding   Direct seeding in flooded paddy field Direct sowing of rice on well-drained paddy field Seeding on a nursery box n  Management by Protégé
  • 11. Designing Agricultural Activity Ontology n  Polysemic concepts l  Definition of agriculture activities with multiple purposes or other properties. [disjunction form] [conjunction form] Activity for puddling Subsoil breaking Activity for soil crushing Activity for preparation of field Activity for water retention Activity for water control Activity for land leveling Polysemic relationship Soil crushing by harrows Activity for puddling  purpose : soil crushing purpose : water retention purpose : land leveling  
  • 12. Designing Agricultural Activity Ontology Activity for water retention Activity for land leveling Activity for soil crushing Activity for puddling  n  Management by Protégé - Polysemic concepts
  • 13. Designing Agricultural Activity Ontology n  Agriculture Activity Ontology l  ver 1.10 : published on February 12, 2016. 330 words collected 作物生産作業       (2016/02/12) 作物生育作業   crop production activity     繁殖制御作業 activity for propagation     栄養成長制御作業 activity in the vegetative growth stage     生殖成長制御作業 activity in the reproductive growth stage   環境制御作業   activity for environment control     土壌制御作業 activity for soil control     気候制御作業 activity for climate control     水分制御作業 activity for water control     生物制御作業 activity for biotic control     化学成分制御作業 activity for chemical control   収穫後作業   post production activity     収穫作業 activity for harvesting     収穫物集約作業       調製作業 activity for processing     熟成作業       計量作業       鮮度保持作業 activity for extending shelf-life     包装作業
 activity for wrapping   作物生産支援作業   indirect activity     機資材準備作業 activity for preparing materials     清掃 activity for cleaning     運搬
 activity for transport     収納作業       モニタリング activity for monitoring   施設機材管理作業 activity for maintaining farm equipment 営農管理作業     administrative activity   経営管理作業   activity for business administration     情報収集 activity for collecting information     会計管理 activity for account management     労働管理 activity for labor management     マーケティング activity for marketing     計画策定 activity for planning     評価作業 activity for evaluation     資材購入
 activity for material purchase
  • 14. Applying Agricultural Activity Ontology n  URI Give a unique URI for each concept [Japanese hiragana] Activity for seed propagation Direct seeding in flooded paddy field [act] sow http://cavoc.org/aao/ns/1/は種 Direct sowing of rice on well-drained paddy field [target] seed Seeding on a nursery box
  • 15. Applying Agricultural Activity Ontology n  Vocabulary Generation Vocabulary is generated by processing the ontology. Vocabulary consists of terms, (non-terminological) concepts and properties. - Terms: Names of activities used by farmers, researchers, and so on. - (Non-terminological) concepts: Concepts used to classify terms. - Properties: Concepts used to define activity concepts. [act] mix Plowing green manure Applying organic matter [target] green manure [act] apply [target] organic matter
  • 16. Applying Agricultural Activity Ontology n  Generation of human-readable definition for terms and concepts Word list Property list Concept list Definition of a concept is generated with properties and its hierarchy [act] mix Plowing green manure [target] green manure A green manure is a fertilizer “Activity for suppression of pest animals with control of wild animals as purpose, with chemical means as means” “Plowing green manure is Applying organic matter, mixed with green manure”
  • 17. n  Reasoning by Ontology l  Infer the most feasible upper concept for the given constraints for a new words Applying Agricultural Activity Ontology Activity for biotic control Activity for suppression of pest animals Activity for suppression of pest animals by physical means control of pest animals Physical means means (0,1) purpose (0,1) Biotic control purpose(0,1) Activity for suppression of pest animals by chemical means Chemical means purpose (0,1) means (0,1) Making a scarecrow‘ suppression of pest animals Purpose (0,1) build act (0,1) scarecrow target (0,1) Physical means Means (0,1) ? Example of「Making a scarecrow」 ?   suppression of pest animals
  • 18. n  Reasoning by Ontology l  Infer the most feasible upper concept for the given constraints for a new words Applying Agricultural Activity Ontology かかし作り 物理的手段 means (0,1) means (0,1) Inference with SWCLOS [1]  Seiji  Koide,  Theory  and  Implementa9on  of  Object  Oriented  Seman9c  Web  Language,   PhD  Thesis,  Graduate  University  for  Advance  Studies,  2011 [1] [1] Activity for biotic control Activity for suppression of pest animals Activity for suppression of pest animals by physical means control of pest animals Physical means means (0,1) purpose (0,1) Biotic control purpose(0,1) suppression of pest animals Activity for suppression of pest animals by chemical means Chemical means purpose (0,1) means (0,1) Making a scarecrow build act (0,1) scarecrow target (0,1)
  • 19. Future work n  Addition and verification of new words Survey more documents and domains to collect words. By adding these words, properties and their values will be verified and extended if necessary. n  Generation of crop-specific ontologies AAO can generate crop-specific ontologies by specifying values of “crop” property. In order to complete these ontologies, concepts and properties may be added. Crop ontology should be provided too. Ac9vity  for   harves9ng Ac9vity  for  wrap  silage Ac9vity  for  digging Ac9vity  for  rice  reaping   by  combine Ac9vity  for  rice  reaping   by  binder Ac9vity  for  rice  reaping   by  hand Ac9vity  for  rice  reaping Ac9vity  for  reaping rice rice rice rice forage  and  manure  crop root  vegetable Agriculture Activity Ontology (AAO) AAO for Race Ac9vity  for   harves9ng Ac9vity  for  rice  reaping   by  combine Ac9vity  for  rice  reaping   by  binder Ac9vity  for  rice  reaping   by  hand Ac9vity  for  rice  reaping Ac9vity  for  reaping Ac9vity  for   harves9ng Ac9vity  for  wrap  silage Ac9vity  for   harves9ng Ac9vity  for  digging AAO for forage and manure crop AAO for Root Vegetables root  vegetable forage  and  manure  crop When  crop  property   is  “Race”, rice When  crop  property  is  “forage  and  manure   crop” When  crop  property  is  “root   vegetable”
  • 20. http://cavoc.org/ Common Agricultural VOCabulary Agriculture Activity Ontology (AAO) ver 1.10 http://cavoc.org/aao/ Summary •  We proposed the ontology for agriculture activity and the vocabulary based on it in order to increase interoperability among agriculture management systems. -  The ontology provides clear definition for concepts and hierarchy among concepts, separation between names and concepts, and functions to define complex concepts. -  The ontology is defined with Description Logics so that logical inference is provided. -  Future work includes addition and verification of new words, generation of crop- specific ontologies. -  We will further apply our approach to crop, fertilizer, and agricultural chemicals to extend the vocabulary.