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«‫العلمي‬ ‫البحث‬ ‫مهارات‬ ‫برنامج‬6»
11/7/2013
1
How to write a good publishable
manuscript
Prof. Afaf El-Ansary
What is the good manuscript?
• A good manuscript leads readers to
scientific significance immediately.
-Content is essential:
- contain a scientific message that is
clear, useful and exciting.
• Presentation is critical:
- conveys the authors thoughts in a
logical manner.
-Construct on a good format and written
in an excellent style.
How to write a good manuscript
• Preparations before starting:
- Construction of the article.
-Technical details.
• Check the originality of your idea at the early
beginning of your research.
-Have you done something new and
interesting?
-Is there anything challenging in your work?
-Is the work is directly related to hot topic?
-Have you provided solutions to any different
problems?
If all answers are yes, then startIf all answers are yes, then start
preparing your manuscriptpreparing your manuscript
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1: Every paper tells a story
the story is not what you did, but rather
what you show, new ideas, new insights
why interesting, important?
why is the story of interest to others?
universal truths, hot topic, surprises or unexpected
results?
know your story!
elevator pitch = summary that is short enough
to give during an elevator ride
You can write a world class
paper
• From title to references
• From submission to revision and
acceptance
• Ideally
– to share research findings and discoveries
with the hope of improving healthcare
– Your goal:
to infect the mind of your reader
with your idea, like a virus
• Practically
– to get funding
– to get promoted
– to get a job
– to keep your job!
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• Good science
• Good writing
• Publication in good journals
A good scientist =A good scientist =
• Novel – new and not resembling something
formerly known or used (can be novel but not
important)
• Mechanistic – testing a hypothesis
• Descriptive – describes how are things are.
• Good writing is a skill you can learn
• It’s a skill that is worth learning:
–You will get more brownie points (more
papers accepted etc)
–Your ideas will have more impact
–You will have better ideas
Increasing
importance
Organizing Analysis & WritingOrganizing Analysis & Writing
•• Use folders toUse folders to
organize your projectsorganize your projects
–– One folder perOne folder per
manuscriptmanuscript
–– Data, notes, relevantData, notes, relevant
articles, drafts of thearticles, drafts of the
paper, editorialpaper, editorial
correspondence, etc.correspondence, etc.
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A Place for WritingA Place for Writing
•• PeacefulPeaceful
–– Quiet, isolated, NoQuiet, isolated, No
noisenoise
•• No distractionsNo distractions
–– Clear your deskClear your desk
except for thingsexcept for things
relevant to yourrelevant to your
paperpaper
–– Avoid sharedAvoid shared
offices if possible.offices if possible.
•• Don’t try toDon’t try to
write if you’rewrite if you’re
really tiredreally tired
–– Have a nap andHave a nap and
then start againthen start again
freshfresh
–– Be happy if youBe happy if you
get in four goodget in four good
hours a dayhours a day
Keep writing is CriticalKeep writing is Critical
•• Work on just one thing at a timeWork on just one thing at a time
•• When working on a paper, do a little bitWhen working on a paper, do a little bit
every dayevery day (even on weekends)(even on weekends)
•• If you don’t feel like writing, just turn onIf you don’t feel like writing, just turn on
your computer and write one sentenceyour computer and write one sentence
–– If you don’t want to continue then stopIf you don’t want to continue then stop——but justbut just
getting started is often the hardest partgetting started is often the hardest part
•• Keep going until you finish the manuscriptKeep going until you finish the manuscript
Five Steps for Crafting yourFive Steps for Crafting your
PaperPaper
1)1) Do lots of analysis to explore yourDo lots of analysis to explore your
data thoroughlydata thoroughly
2)2) As you work, create publicationAs you work, create publication--
quality figures and tables that displayquality figures and tables that display
your key findingsyour key findings
3)3) Summarize your main resultsSummarize your main results
(including statistical tests) in the(including statistical tests) in the
Results section as you go.Results section as you go.
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44)As you analyze the data, insert ideas)As you analyze the data, insert ideas
within your paper outline.within your paper outline.
55) Then write the manuscript, starting) Then write the manuscript, starting
with the Introduction and progressingwith the Introduction and progressing
directly through the paperdirectly through the paper
•• Getting the first draft is the hardest part,Getting the first draft is the hardest part,
so don’t be perfectionistic: just write theso don’t be perfectionistic: just write the
paper and you can edit it laterpaper and you can edit it later
Before you write a paper…chick
the following:
1. Originality of your Idea
2. Type of Manuscript
3. Who is your audience
4. Choose the right journal
5. Author Guides
Decide the type of your manuscript
• Full articles/Original articles: the most important papers;
often substantial, completed pieces of research that are of
significance.
• Short communications: usually published for quick and
early communication of significant and original advances;
much shorter than full articles (usually strictly limited).
• Review papers: summarize recent developments on a
specific topic; highlight important points that have been
previously reported and introduce no new information;
often submitted on invitation.
• A standard format is used for scientific
articles, in which the author presents the
research in an orderly, logical manner.
• This doesn’t necessarily reflect the order in
which we did or thought about the work.
- TitleI AuthorsI Abstract, IntroductionI
Material and MethodsI Results (with Tables
and figures)I DiscussionI AcknowledgementI
References
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Manuscript preparationManuscript preparation
• Article title
-No more than 15 words
- No excessive punctuation: i.e. no
colons, commas, “etc.”
-Informative, but not inflated relevance
-Indicate species studied (human versus
animal model)
• The title of the paper is the most often
encountered part of any paper and therefore
has great importance in the success of the
paper. Abstracting and indexing services will
utilize the title, therefore, all words in the title
should be chosen with great care and their
association with other words in the title
carefully managed.
Assignment 1Assignment 1
Suggest a title for each of the two
provided abstracts.
• ONLY include those who have made an
intellectual contribution to the research
• OR those who will publicly defend the
data and conclusions, and who have
approved the final version
Author listing
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Authors' contributions
• AE designed the study and drafted the
manuscript.
• ABB helped to draft the manuscript and
performed the statistical analysis.
• LA provided samples and participated in the
design of the study. All authors have read and
approved the final manuscript.
• Most of the journals assume an order based on each
author’s importance to the study.
–The first author is primarily responsible for collecting
and analyzing data, and writing.
–The last one, an established investigator, assumes the
overall responsibility for the study.
–The middle authors are listed according to their
order of importance to the study.
Authorship ordering:
• The single most important thing about an
abstract is that it is a short document that is
intended to capture the interest of a potential
reader of your paper.
• Thus in a very important sense it is a
marketing document for your full paper.
• If the Abstract is poorly written or if it is
boring then it will not encourage a potential
reader to spend the time reading your work.
The abstract:
• Thus the first rule of Abstract
writing is that it should engage
the reader by telling him or her
what your paper is about and
why they should read it.
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• The marketing of your
proposed paper needs to be
done within the word limit
of 300 to 500 words. It is
poor practice not to use the
300 words and it is
considered a bad tactic to
go over the limit of 500.
• An abstract is a brief, comprehensive summary
of the contents of the article;
• It allows readers to survey the content of an
article.
• Like the title, is used by abstracting and
information services to index the article.
• Key words are used to find the paper,
especially during computerised searches.
• Somewhere between 5 and 10 Key
Words are normally required and they
should be the words which most closely
reflect the content of the paper.
• Broad information on topic
– Previous research
• Narrower background information
– Need for study
• Focus of paper
– Hypothesis
• Summary of problem (selling point)
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• You're only writing a paper,
not a book.
• Your time for reading is
limited. The broader the topic
the more you must read in
order to cover all aspects of
that topic.
• You want to study a narrow
area deeply, not a broad area
superficially.
Study goals:
hypotheses
Broadest scope, designed to appeal
to diverse readers
Progressively narrower
scope: concepts, species,
geographical scale, etc.
with a smooth connection
at each transition to avoid
losing any readers
that we started with
Introduction
• if reader not excited by intro, paper is lost
• recipe:
– para. 1: motivation: broadly, what is problem
area, why important?
– para. 2: narrow down: what is problem you
specifically consider
– para. 3: “In the paper, we ….”: most crucial
paragraph, tell your elevator pitch
– para. 4: how different/better/relates to other
work
– para. 5: “The remainder of this paper is
structured as follows”
11/7/2013
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Know the basics of organized writing
• paragraph = ordered set of topically-related
sentences
• lead sentence
might tie to previous paragraph
• sentences in paragraph should have logical
narrative flow, relating to to topic
• don’t mix tenses in descriptive text
• one sentence paragraph is unacceptable.
Study the art of writing
• writing well gives you an advantage
• writing well helps in getting your work
published in top venues
• highly recommended:
• who do you think are the best writers in your
area: study their style
–Too much or not enough
information i.e:
–Unnecessary Length
–Unclear structure and
organisation
–Lack of purpose and direction
–Too many irrelevant details
–Not enough background context
–Too much background context
Put yourself in place of the
reader
• less is more:
– take the time to write less
• readers shouldn’t have to work
– won’t “dig” to get story, understand context,
results
• what does reader know/not know, want/not
want?
– write for reader, not for yourself
11/7/2013
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• Put enough information for reader to
understand what you write?
– no one has as much background/content as
you
– no one can read your mind
– all terms/notation defined?
Assignment II:
• Suggest the points to be covered in order to
write a perfect introduction related to any
of the titles below or any suggested point
related to your interest.
Oral carnosine supplementation preventsOral carnosine supplementation prevents
vascular damage in experimental diabeticvascular damage in experimental diabetic
retinopathy.retinopathy.
what did I do to answer my resarchwhat did I do to answer my resarch
question?question?
• Provides instruction on exactly how to repeat
experiment
–Subjects
–Sample preparation techniques
–Sample origins
–Field site description
–Data collection protocol
–Any computer programs used
–Data analysis techniques
–Description of equipment and its use
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• Provide full details so
that the experiments are
reproducible.
• If the peer reviewer has
doubts that the
experiments could be
repeated, the manuscript
will be rejected.
• Organize the methods under
subheadings, with related methods
described together (e.g. subjects,
experimental design, Measurement
of…, Hormonal assays etc…).
NowNow youyou havehave toto
startstart thinkingthinking inin
orderorder toto writewrite aa
perfectperfect discussiondiscussion
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–Make a list of what you put in the results
on scrap paper
–Think about what these results tell you
about your hypothesis
–Plan a way to discuss them in a logical
order
–Consult your team authors.
Before you put pen to paper:
• If you apply or use new technique
you must evaluate the experimental
method used.
The Discussion depends on the nature theThe Discussion depends on the nature the
workwork
-State major findings
- Paraphrase abstract
First paragraph
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•Base each on a major result
• Always focus on your results
• Never discuss prior work
without reference to your work
• Refer Tables and Figures
Middle paragraphMiddle paragraph
• AND whether your findings are
realistic
• Should include references that
support and/or challenge your results
and ideas
Reference to your hypothesis
where these supported
• “In summary…” (2-3 sentences)
• Avoid speculation, avoid “need more
work”
Last paragraph
•• End with a concluding paragraph thatEnd with a concluding paragraph that
sums up:sums up:
–what you did
–what you found
–your main conclusions
11/7/2013
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Why do Researchers Publish?
• To register a discovery as made by them
on a certain date
– priority, who was first, I. P. registration
• To get their research (and by implication
themselves) quality stamped by publication
in a journal of known quality
– you are what you publish
• To let their peers know what they have
done
– attract recognition, reward and collaboration
• To leave a permanent record of research
1. Check the originality of your idea
at the very beginning of your
research.
• Have you done something new and
interesting?
• Is there anything challenging in your work?
• Is the work directly related to a current hot
topic?
• Have you provided solutions to any difficult
problems?
3. Who is your Audience?
Topics of local or national relevance are
sometimes not interesting for an international
audience.
11/7/2013
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• Factors involved include:
• The visibility of the journal,
• The focus of the journal and how well it
matches the topic of the manuscript,
• The impact factor of the journal,
• The timeliness of the editorial office process
and whether feedback is constructive,
• Journal accessibility,
• Author costs,
There are many variables influencing theThere are many variables influencing the
choice of journal for manuscript submission:choice of journal for manuscript submission: ISI Journal Citation ReportsISI Journal Citation Reports
(JCR)(JCR)
IMPACT FACTOR
number of citations received in current
year by papers published in the journal in
the previous two (or five) years
divided by
number of papers published in the journal
in the previous two (or five) years
Choose the
right journal
• Investigate all
candidate
journals to find
out:
– Aims and
scope
– Types of
articles
– Readership
– Current hot
topics
(go through
recent
Example
Read theRead the ‘‘Guide for AuthorsGuide for Authors’’! Again and! Again and
again!again!
• Apply the Guide for Authors to your
manuscript, even to the first draft (text
layout, paper citation, nomenclature,
figures and table, etc.). It will save your
time, and the editor’s.
• All editors hate wasting time on poorly
prepared manuscripts.
11/7/2013
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Cover letterCover letter
• 2-3 paragraphs MAXIMUM
• Should introduce the study and the
authors
• Declare conflicts of interest
• Indicate that the findings are as yet
unpublished
• Suggest referees and list exclusions
•• Explain why your paper is important
` and novel but only in a precise `
manner.
PROOFREAD IT BEFORE
SUBMITTING
-correct journal, date, grammar
Assignment III:
• Write a short covering letter to editor.
Who moved your
manuscript?
11/7/2013
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Role of the editorRole of the editor--inin--chiefchief
• Decides on acceptance of each paper (may
overrule reviewers)
• Decides on board members (together with
the publisher)
• Decides on journal policy (together with
board and publisher): aims & scope, article
types, reader- and authorship
• Public face of the journal
• Active member of the research community
(visits conferences, solicits papers from
best labs)
• Not an employee of the publisher!
Role of the editorial boardRole of the editorial board
• Board members are chosen for their
large network and experience in
important subjects within a research
field
• Advise the chief editor on specialized
areas
• Arrange for review of papers
• Occasionally review papers
• Act as ambassadors for the journal,
What are editors looking for?What are editors looking for?
–The authors appears to know the
journal
–The authors appears to know who
will be reading the paper
–Is the level of the paper suitable for
the readers?
–What is to be learned from the paper?
Peer ReviewPeer Review
• A methodological check
– soundness of argument
– supporting data and cited references
• Done by at least two professional
academics
– (“the reviewers”)
• Reviewers peer review without payment
– costs of administering the selection of
reviewers, postage and document costs are
borne by the journal
•• On average 30% more papers areOn average 30% more papers are
11/7/2013
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Review processReview process
• Reviewers are normally given several
weeks to review the paper.
• They are asked to comment on its
accuracy, the validity of the comments
made and the conclusions reached by
the authors and then categorise the
paper under the headings of:
What are reviewers looking for?What are reviewers looking for?
– Does the paper match the journals aims
and scopes and instructions for authors
– Is of sufficient quality to be published
– Look closely at literature and meaning
– Context for research in area
– Reviewers chosen because of familiarity
with subject area
• Reject
• Accept, this might include a judgement on the
priority/importance of the paper
• Make suitable revisions; these could be minor
changes in text to more major changes, e.g.
repeated or additional experiments
• The reviewers are also asked to give specific
feedback to the authors of the paper. Peer
reviewers normally remain anonymous.
What about their decisions?What about their decisions? Responding to ReviewersResponding to Reviewers
• After submitting paper you will
often get comments from
reviewers.
11/7/2013
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Do not respond immediately
Read the comments
Take a break
Then address the comments
Responding to reviewers andResponding to reviewers and
editors comments (1 of 2)editors comments (1 of 2)
•• What are the major comments?What are the major comments?
– Content questions, Perhaps a lack of
literature
– Unclear aims unsubstantiated conclusions,
– Theoretically flawed
•• What are the minor comments?What are the minor comments?
– lay out, referencing, rewrite abstract, shorten,
lengthen etc, further develop conclusion
Responding to reviewers andResponding to reviewers and
editors comments (2 of 2)editors comments (2 of 2)
1. Make all the changes you can.
2. Write a covering letter highlighting your
response to the reviewers comments
1. Note where you have responded positively
2. Note where and why you have chosen not to
respond to some comments. You cannot make
all the changes, or may not feel it is
appropriate to do so.
3. If in doubt talk to the editor – but be polite!
Example of reviewers andExample of reviewers and
editors commentseditors comments
11/7/2013
21
Rejected with
comments
May resubmit if
address
commentsAccepted!!
Submit it
somewhere else
Address
comments
& resubmit
Submit it
somewhere else
SUBMIT ARTICLE
Possible reviewers’ commentsPossible reviewers’ comments
Rejected
no review
Types of commentsTypes of comments
1. Valid criticisms that are easy to
address
2. Valid criticisms that are hard to
address
3. Invalid criticisms that you can show
are invalid (respectfully!)
4. Matters of opinion (not valid)
Valid criticisms that are hard toValid criticisms that are hard to
addressaddress
Reviewer’s Comment:
Hepatitis A virus was detected by PCR but it
has been shown that the primers used in this
study have homology with the pol gene of the
Hepatitis C virus. Thus, these results may not
be specific for Hepatitis A virus.
Try to address the limitationTry to address the limitation
Valid criticisms that are easy toValid criticisms that are easy to
addressaddress
Reviewer’s Comment:
When discussing the prevalence of dengue
virus, there was no mention of the prevalence
of dengue virus by age group. I think this
would be useful information.
Find the information and include it!!!!Find the information and include it!!!!
11/7/2013
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Invalid criticismsInvalid criticisms
that you can show are invalidthat you can show are invalid
• Sometimes the reviewer has obviously
misunderstood something
- but make sure YOU didn’t
misunderstand
the reviewer!
• Tactfully answer:
“We have further clarified this
statement.”
Have a good attitudeHave a good attitude
• Be thankful to receive comments
Comments = Improvements of you
manuscript
• Graciously recognize the importance
of a comment and address it
Do you need to do moreDo you need to do more
experiments?experiments?
• If the reviewers’ requests are valid:
Do the additional experiments as soon as
possible!
Resubmit
• BUT
- You can try to persuade the editor that the
current collection of data is sufficient.
- One paper can’t answer every question.
The next paper will address further questions.
Reviewer #1
to Comment #4 ”..sample volume. The current
trend is to use smaller sample volumes."
We have sought to maintain the volume that
would be more consistent with using existing
ELISA reagents and clinical serum samples. We
currently use a sample volume of 150 ul but have
tested smaller sample volumes (e.g., 50 ul) with
some success. Our experimental results indicate
that the 150 ul volume works best for magnetic
washing and serum sample dilutions as well as
maximizes sensitivity.
Itemized response to reviewersItemized response to reviewers
11/7/2013
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Reviewer #2,
As magnetic washing is a crucial step in this manuscript, it
needs to be further described in the introduction.
Comment
We agree that we should have been more specific about the
references for magnetic washing. We have added the
references that we believe are the first references to
magnetic washing using magnetic particles on a integrated
circuit sensor to the text (Page 4, line 6).
Itemized response to reviewers andItemized response to reviewers and BeBe
specificspecific
Reviewer #1
Page 11, lines 241-244:
The percentage of the de novo synthesis and inhibitory
effects should be indicated, including range of deviation
(indicate whether SD or SEM is presented).
Comment
The percentage of both de novo synthesis and the inhibitory
effect of Puromycin are now indicated in Figure 2a. The
error bars are representing SD, which is now specified in text
(page 11, line 243) and in legend of figure 2.
Itemized response to reviewersItemized response to reviewers
Examples in methods section
Itemized response to reviewersItemized response to reviewers
• List each reviewer’s comments
• Point out the page and section of the
manuscript that is being discussed.
• Address each point.
If you made a change:
- Show it
- Include the new text in your response
• If you didn’t make a change, say why not.
How to write point by pointHow to write point by point
response to reviewer comment.response to reviewer comment.
• Start with a positive statement.
e.g: Thank you for taking the time to
review this paper. We have addressed all
of your comments, as described in the
dialogue below. In summary, we have
performed a ...
11/7/2013
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A point by point answers to
reviewers’ comments
• Thank you for taking the time to review
this paper. We have addressed all of your
comments, as described in the dialogue
below. In summary, we have performed all
mistakes and suggestions as
recommended by the reviewers and
marked in red.
ResubmissionsResubmissions
Make sure you include:
• Cover letter
- Clarify it is a resubmission
- Point out that the reviewers’ comments were
addressed
• Itemized response to reviewers
• New version of the manuscript
- paper/disc format (read instructions!)
• Include the same items that you included in
the first submission Ref: K. LaMarco & R. Ward
• Reviewer #2:
All results are summarized in Tables 1 and 2 ; duplicating
the presentation in the form of Figs. 1-4 does not surve
any additional purpose. Thus all Figs. should be deleted.
Either keep t the Figs. Or Tables. Not both.
Tables have been removed from the manuscript as
recommended by the reviewer
• For such small number of observations the introduction is
too lengthy. This should be concise and short.
The introduction section has been shortened as suggested
Continued:
• better presentation combine Results and
Discussion and present a concise version.
We agree perfectly with the reviewer, the
results and discussion sections have been
shortened and combined as one section
as suggested.
• No need to describe methods in details. A
brief description with appropriate reference
will suffice.
Methods description has been shortened
11/7/2013
25
• There are still a few kinks in English. Get
these straightened out.
Written English has been improved along
the
manuscript.
• The statistical analysis should include
"Student's t-test".
Student's t-test is already used for the
statistical analysis together with ROC and
Pearson correlations. Please see page 7.
Resubmissions
• Make sure you include:
• Cover letter
- Clarify it is a resubmission
- Point out that the reviewers’ comments were
addressed
• Itemized response to reviewers
• New version of the manuscript
- paper/disc format (read instructions!)
• Include the same items that you included in the
first
Resubmit and waitResubmit and wait
• If it is rejected after you have addressed
the reviewers’ comments:
– DON’T GIVE UP! Maybe you need to do a few more
experiments. Maybe not!
– Try another journal
– Learn from the reviewers’ comments
• Don’t give up until you successfully publish your
paper!
– It’s important to share your results with the scientific
community
– Have patience and confidence
Role of the PublisherRole of the Publisher
• Editorial management
– acquisition of content
– monitor research trends
– monitor editorial office efficiency
– monitor key success indicators
– editorial renewal
• Business management
• Production and online hosting
• Sales and marketing
Solicit and
manage
submission
s
Manage
peer
review
Productio
n
Publish
and
dissemin
ate
Edit and
prepare
Archive
and
promote
11/7/2013
26
eTransformation
101
= print
= print + electronic
= eOnly
• In the 1990s, Elsevier made a
huge technology investment to
build ScienceDirect, launched in
1997
• Revolutionize the way
researchers access information
•Desktop access
•Articles in Press
• Change the traditional job scopes
of libraries
•Usage analysis
•Interaction with users
1997 1999 2001 2003 2005
Why Papers get Early RejectionWhy Papers get Early Rejection
(Part 1)(Part 1)
Aims and scope
• Paper is of limited interest or covers
local issues only (sample type,
geography, specific product, etc.).
• Paper is a routine application of well-
known methods
• Paper presents an incremental
advance or is limited in scope
• Novelty and significance are not
immediately evident or sufficiently well-
Why Papers get Early RejectionWhy Papers get Early Rejection
(Part 2)(Part 2)
Preparation
• Failure to meet submission
requirements
• Incomplete coverage of literature
• Unacceptably poor English
Rejection: not the end of theRejection: not the end of the
worldworld
• Everyone has papers rejected – do not
take it personally.
• Try to understand why the paper was
rejected.
• Note that you have received the benefit of
the editors and reviewers’ time; take their
advice seriously
• Re-evaluate your work and decide whether
it is appropriate to submit the paper
elsewhere.
11/7/2013
27
• Never treat publication as a lottery by
resubmitting a rejected manuscript
directly to another journal without
any significant revision!!! It won’t
save any of your time and energy…
• The original reviewers (even editors) may eventually find
it, which can lead to towards the author.
• A suggested strategy
– In your cover letter, declare that the paper was rejected
and name the journal.
– Include the referees’ reports and a detailed letter of
response, showing how each comment has been
addressed.
– Explain why you are resubmitting the paper to this journal,
e.g., this journal is a more appropriate journal; the
manuscript has been improved as a result of its previous
review; etc.
What gets you accepted?
•• AAttention to details
•• CCheck and double check your work
•• CConsider the reviews
•• EEnglish must be as good as possible
•• PPresentation is important
•• TTake your time with revision
•• AAcknowledge those who have helped
you
•• NNew, original and previously
unpublished
•• CCritically evaluate your own manuscript
•• EEthical rules must be obeyed
…and my publishing advice is as
follows:
• Submit to the right journal
(scope and prestige)
• Submit to one journal only
• Do not submit “salami” article
• Pay attention to journal
requirements
• Pay attention to structure
• Check the English
• Pay attention to ethical
11/7/2013
28
Ethical Issues
Unethical behavior could lead to rejectionUnethical behavior could lead to rejection
of your manuscriptof your manuscript
Unethical behavior includes:
•Multiple submissions
•Plagiarism
•Data fabrication and falsification
•Improper use of human subjects and animals in
research
•Improper author contribution
Multiple submissions
• Multiple submissions save your time but waste
editors’
The editorial process of your manuscripts will be
completely stopped if the duplicated submissions
are
discovered
“It is considered to be unethical…We have
thrown out a paper when an author was
caught doing this. I believe that the other
journal did the same thing”
James C. Hower, Editor, International Journal of
Coal
Geology
Plagiarism
“Plagiarism is the appropriation of another
person’s ideas, processes, results, or words
without giving appropriate credit, including
those obtained through confidential review
of
others’ research proposals and
manuscripts”
11/7/2013
29
Plagiarism
“Presenting the data or interpretations of others
without crediting them, and thereby gaining for
yourself the rewards earned by others.
Bruce Railsback, Professor, Department of
Geology, University of Georgia
Paraphrasing
• Original (Gratz, 1982):
Bilateral vagotomy resulted in an increase in tidal
volume but a depression in respiratory frequency
such that total ventilation did not change.
• Restatement 1:
Gratz (1982) showed that bilateral vagotomy
resulted in an increase in tidal volume but a
depression in respiratory frequency such that total
ventilation did not change.
Ronald K. Gratz. Using Other’s Words and Ideas.
Department of Biological Sciences, Michigan Technological
University
Paraphrasing
• Original (Buchanan, 1996):
What makes intentionally killing a human being a
moral wrong for which the killer is to be
condemned is that the killer did this morally bad
thing not inadvertently or even negligently, but with
a conscious purpose – with eyes open and a will
directed toward that very object.
• Restatement 2:
Buchanan (1996) states that we condemn a person
who intentionally kills a human being because he
did a "morally bad thing" not through negligence or
accident but with open eyes and a direct will to take
that life.
Unethical research
• Experiments on human subjects or
animals should follow related ethical
standards, namely, the Helsinki
Declaration of 1975, as revised in 2000
(5).
• If doubt exists concerning the compliance
of the research with the Helsinki
Declaration, authors must explain the
rationale for their approach and
demonstrate approval from the institutional
review body.
11/7/2013
30
How to Submit Papers to ISI Journals
www.sciencedirect.com
Online submission of your
manuscript

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محاضرة 6

  • 2. 11/7/2013 1 How to write a good publishable manuscript Prof. Afaf El-Ansary What is the good manuscript? • A good manuscript leads readers to scientific significance immediately. -Content is essential: - contain a scientific message that is clear, useful and exciting. • Presentation is critical: - conveys the authors thoughts in a logical manner. -Construct on a good format and written in an excellent style. How to write a good manuscript • Preparations before starting: - Construction of the article. -Technical details. • Check the originality of your idea at the early beginning of your research. -Have you done something new and interesting? -Is there anything challenging in your work? -Is the work is directly related to hot topic? -Have you provided solutions to any different problems? If all answers are yes, then startIf all answers are yes, then start preparing your manuscriptpreparing your manuscript
  • 3. 11/7/2013 2 1: Every paper tells a story the story is not what you did, but rather what you show, new ideas, new insights why interesting, important? why is the story of interest to others? universal truths, hot topic, surprises or unexpected results? know your story! elevator pitch = summary that is short enough to give during an elevator ride You can write a world class paper • From title to references • From submission to revision and acceptance • Ideally – to share research findings and discoveries with the hope of improving healthcare – Your goal: to infect the mind of your reader with your idea, like a virus • Practically – to get funding – to get promoted – to get a job – to keep your job!
  • 4. 11/7/2013 3 • Good science • Good writing • Publication in good journals A good scientist =A good scientist = • Novel – new and not resembling something formerly known or used (can be novel but not important) • Mechanistic – testing a hypothesis • Descriptive – describes how are things are. • Good writing is a skill you can learn • It’s a skill that is worth learning: –You will get more brownie points (more papers accepted etc) –Your ideas will have more impact –You will have better ideas Increasing importance Organizing Analysis & WritingOrganizing Analysis & Writing •• Use folders toUse folders to organize your projectsorganize your projects –– One folder perOne folder per manuscriptmanuscript –– Data, notes, relevantData, notes, relevant articles, drafts of thearticles, drafts of the paper, editorialpaper, editorial correspondence, etc.correspondence, etc.
  • 5. 11/7/2013 4 A Place for WritingA Place for Writing •• PeacefulPeaceful –– Quiet, isolated, NoQuiet, isolated, No noisenoise •• No distractionsNo distractions –– Clear your deskClear your desk except for thingsexcept for things relevant to yourrelevant to your paperpaper –– Avoid sharedAvoid shared offices if possible.offices if possible. •• Don’t try toDon’t try to write if you’rewrite if you’re really tiredreally tired –– Have a nap andHave a nap and then start againthen start again freshfresh –– Be happy if youBe happy if you get in four goodget in four good hours a dayhours a day Keep writing is CriticalKeep writing is Critical •• Work on just one thing at a timeWork on just one thing at a time •• When working on a paper, do a little bitWhen working on a paper, do a little bit every dayevery day (even on weekends)(even on weekends) •• If you don’t feel like writing, just turn onIf you don’t feel like writing, just turn on your computer and write one sentenceyour computer and write one sentence –– If you don’t want to continue then stopIf you don’t want to continue then stop——but justbut just getting started is often the hardest partgetting started is often the hardest part •• Keep going until you finish the manuscriptKeep going until you finish the manuscript Five Steps for Crafting yourFive Steps for Crafting your PaperPaper 1)1) Do lots of analysis to explore yourDo lots of analysis to explore your data thoroughlydata thoroughly 2)2) As you work, create publicationAs you work, create publication-- quality figures and tables that displayquality figures and tables that display your key findingsyour key findings 3)3) Summarize your main resultsSummarize your main results (including statistical tests) in the(including statistical tests) in the Results section as you go.Results section as you go.
  • 6. 11/7/2013 5 44)As you analyze the data, insert ideas)As you analyze the data, insert ideas within your paper outline.within your paper outline. 55) Then write the manuscript, starting) Then write the manuscript, starting with the Introduction and progressingwith the Introduction and progressing directly through the paperdirectly through the paper •• Getting the first draft is the hardest part,Getting the first draft is the hardest part, so don’t be perfectionistic: just write theso don’t be perfectionistic: just write the paper and you can edit it laterpaper and you can edit it later Before you write a paper…chick the following: 1. Originality of your Idea 2. Type of Manuscript 3. Who is your audience 4. Choose the right journal 5. Author Guides Decide the type of your manuscript • Full articles/Original articles: the most important papers; often substantial, completed pieces of research that are of significance. • Short communications: usually published for quick and early communication of significant and original advances; much shorter than full articles (usually strictly limited). • Review papers: summarize recent developments on a specific topic; highlight important points that have been previously reported and introduce no new information; often submitted on invitation. • A standard format is used for scientific articles, in which the author presents the research in an orderly, logical manner. • This doesn’t necessarily reflect the order in which we did or thought about the work. - TitleI AuthorsI Abstract, IntroductionI Material and MethodsI Results (with Tables and figures)I DiscussionI AcknowledgementI References
  • 7. 11/7/2013 6 Manuscript preparationManuscript preparation • Article title -No more than 15 words - No excessive punctuation: i.e. no colons, commas, “etc.” -Informative, but not inflated relevance -Indicate species studied (human versus animal model) • The title of the paper is the most often encountered part of any paper and therefore has great importance in the success of the paper. Abstracting and indexing services will utilize the title, therefore, all words in the title should be chosen with great care and their association with other words in the title carefully managed. Assignment 1Assignment 1 Suggest a title for each of the two provided abstracts. • ONLY include those who have made an intellectual contribution to the research • OR those who will publicly defend the data and conclusions, and who have approved the final version Author listing
  • 8. 11/7/2013 7 Authors' contributions • AE designed the study and drafted the manuscript. • ABB helped to draft the manuscript and performed the statistical analysis. • LA provided samples and participated in the design of the study. All authors have read and approved the final manuscript. • Most of the journals assume an order based on each author’s importance to the study. –The first author is primarily responsible for collecting and analyzing data, and writing. –The last one, an established investigator, assumes the overall responsibility for the study. –The middle authors are listed according to their order of importance to the study. Authorship ordering: • The single most important thing about an abstract is that it is a short document that is intended to capture the interest of a potential reader of your paper. • Thus in a very important sense it is a marketing document for your full paper. • If the Abstract is poorly written or if it is boring then it will not encourage a potential reader to spend the time reading your work. The abstract: • Thus the first rule of Abstract writing is that it should engage the reader by telling him or her what your paper is about and why they should read it.
  • 9. 11/7/2013 8 • The marketing of your proposed paper needs to be done within the word limit of 300 to 500 words. It is poor practice not to use the 300 words and it is considered a bad tactic to go over the limit of 500. • An abstract is a brief, comprehensive summary of the contents of the article; • It allows readers to survey the content of an article. • Like the title, is used by abstracting and information services to index the article. • Key words are used to find the paper, especially during computerised searches. • Somewhere between 5 and 10 Key Words are normally required and they should be the words which most closely reflect the content of the paper. • Broad information on topic – Previous research • Narrower background information – Need for study • Focus of paper – Hypothesis • Summary of problem (selling point)
  • 10. 11/7/2013 9 • You're only writing a paper, not a book. • Your time for reading is limited. The broader the topic the more you must read in order to cover all aspects of that topic. • You want to study a narrow area deeply, not a broad area superficially. Study goals: hypotheses Broadest scope, designed to appeal to diverse readers Progressively narrower scope: concepts, species, geographical scale, etc. with a smooth connection at each transition to avoid losing any readers that we started with Introduction • if reader not excited by intro, paper is lost • recipe: – para. 1: motivation: broadly, what is problem area, why important? – para. 2: narrow down: what is problem you specifically consider – para. 3: “In the paper, we ….”: most crucial paragraph, tell your elevator pitch – para. 4: how different/better/relates to other work – para. 5: “The remainder of this paper is structured as follows”
  • 11. 11/7/2013 10 Know the basics of organized writing • paragraph = ordered set of topically-related sentences • lead sentence might tie to previous paragraph • sentences in paragraph should have logical narrative flow, relating to to topic • don’t mix tenses in descriptive text • one sentence paragraph is unacceptable. Study the art of writing • writing well gives you an advantage • writing well helps in getting your work published in top venues • highly recommended: • who do you think are the best writers in your area: study their style –Too much or not enough information i.e: –Unnecessary Length –Unclear structure and organisation –Lack of purpose and direction –Too many irrelevant details –Not enough background context –Too much background context Put yourself in place of the reader • less is more: – take the time to write less • readers shouldn’t have to work – won’t “dig” to get story, understand context, results • what does reader know/not know, want/not want? – write for reader, not for yourself
  • 12. 11/7/2013 11 • Put enough information for reader to understand what you write? – no one has as much background/content as you – no one can read your mind – all terms/notation defined? Assignment II: • Suggest the points to be covered in order to write a perfect introduction related to any of the titles below or any suggested point related to your interest. Oral carnosine supplementation preventsOral carnosine supplementation prevents vascular damage in experimental diabeticvascular damage in experimental diabetic retinopathy.retinopathy. what did I do to answer my resarchwhat did I do to answer my resarch question?question? • Provides instruction on exactly how to repeat experiment –Subjects –Sample preparation techniques –Sample origins –Field site description –Data collection protocol –Any computer programs used –Data analysis techniques –Description of equipment and its use
  • 13. 11/7/2013 12 • Provide full details so that the experiments are reproducible. • If the peer reviewer has doubts that the experiments could be repeated, the manuscript will be rejected. • Organize the methods under subheadings, with related methods described together (e.g. subjects, experimental design, Measurement of…, Hormonal assays etc…). NowNow youyou havehave toto startstart thinkingthinking inin orderorder toto writewrite aa perfectperfect discussiondiscussion
  • 14. 11/7/2013 13 –Make a list of what you put in the results on scrap paper –Think about what these results tell you about your hypothesis –Plan a way to discuss them in a logical order –Consult your team authors. Before you put pen to paper: • If you apply or use new technique you must evaluate the experimental method used. The Discussion depends on the nature theThe Discussion depends on the nature the workwork -State major findings - Paraphrase abstract First paragraph
  • 15. 11/7/2013 14 •Base each on a major result • Always focus on your results • Never discuss prior work without reference to your work • Refer Tables and Figures Middle paragraphMiddle paragraph • AND whether your findings are realistic • Should include references that support and/or challenge your results and ideas Reference to your hypothesis where these supported • “In summary…” (2-3 sentences) • Avoid speculation, avoid “need more work” Last paragraph •• End with a concluding paragraph thatEnd with a concluding paragraph that sums up:sums up: –what you did –what you found –your main conclusions
  • 16. 11/7/2013 15 Why do Researchers Publish? • To register a discovery as made by them on a certain date – priority, who was first, I. P. registration • To get their research (and by implication themselves) quality stamped by publication in a journal of known quality – you are what you publish • To let their peers know what they have done – attract recognition, reward and collaboration • To leave a permanent record of research 1. Check the originality of your idea at the very beginning of your research. • Have you done something new and interesting? • Is there anything challenging in your work? • Is the work directly related to a current hot topic? • Have you provided solutions to any difficult problems? 3. Who is your Audience? Topics of local or national relevance are sometimes not interesting for an international audience.
  • 17. 11/7/2013 16 • Factors involved include: • The visibility of the journal, • The focus of the journal and how well it matches the topic of the manuscript, • The impact factor of the journal, • The timeliness of the editorial office process and whether feedback is constructive, • Journal accessibility, • Author costs, There are many variables influencing theThere are many variables influencing the choice of journal for manuscript submission:choice of journal for manuscript submission: ISI Journal Citation ReportsISI Journal Citation Reports (JCR)(JCR) IMPACT FACTOR number of citations received in current year by papers published in the journal in the previous two (or five) years divided by number of papers published in the journal in the previous two (or five) years Choose the right journal • Investigate all candidate journals to find out: – Aims and scope – Types of articles – Readership – Current hot topics (go through recent Example Read theRead the ‘‘Guide for AuthorsGuide for Authors’’! Again and! Again and again!again! • Apply the Guide for Authors to your manuscript, even to the first draft (text layout, paper citation, nomenclature, figures and table, etc.). It will save your time, and the editor’s. • All editors hate wasting time on poorly prepared manuscripts.
  • 18. 11/7/2013 17 Cover letterCover letter • 2-3 paragraphs MAXIMUM • Should introduce the study and the authors • Declare conflicts of interest • Indicate that the findings are as yet unpublished • Suggest referees and list exclusions •• Explain why your paper is important ` and novel but only in a precise ` manner. PROOFREAD IT BEFORE SUBMITTING -correct journal, date, grammar Assignment III: • Write a short covering letter to editor. Who moved your manuscript?
  • 19. 11/7/2013 18 Role of the editorRole of the editor--inin--chiefchief • Decides on acceptance of each paper (may overrule reviewers) • Decides on board members (together with the publisher) • Decides on journal policy (together with board and publisher): aims & scope, article types, reader- and authorship • Public face of the journal • Active member of the research community (visits conferences, solicits papers from best labs) • Not an employee of the publisher! Role of the editorial boardRole of the editorial board • Board members are chosen for their large network and experience in important subjects within a research field • Advise the chief editor on specialized areas • Arrange for review of papers • Occasionally review papers • Act as ambassadors for the journal, What are editors looking for?What are editors looking for? –The authors appears to know the journal –The authors appears to know who will be reading the paper –Is the level of the paper suitable for the readers? –What is to be learned from the paper? Peer ReviewPeer Review • A methodological check – soundness of argument – supporting data and cited references • Done by at least two professional academics – (“the reviewers”) • Reviewers peer review without payment – costs of administering the selection of reviewers, postage and document costs are borne by the journal •• On average 30% more papers areOn average 30% more papers are
  • 20. 11/7/2013 19 Review processReview process • Reviewers are normally given several weeks to review the paper. • They are asked to comment on its accuracy, the validity of the comments made and the conclusions reached by the authors and then categorise the paper under the headings of: What are reviewers looking for?What are reviewers looking for? – Does the paper match the journals aims and scopes and instructions for authors – Is of sufficient quality to be published – Look closely at literature and meaning – Context for research in area – Reviewers chosen because of familiarity with subject area • Reject • Accept, this might include a judgement on the priority/importance of the paper • Make suitable revisions; these could be minor changes in text to more major changes, e.g. repeated or additional experiments • The reviewers are also asked to give specific feedback to the authors of the paper. Peer reviewers normally remain anonymous. What about their decisions?What about their decisions? Responding to ReviewersResponding to Reviewers • After submitting paper you will often get comments from reviewers.
  • 21. 11/7/2013 20 Do not respond immediately Read the comments Take a break Then address the comments Responding to reviewers andResponding to reviewers and editors comments (1 of 2)editors comments (1 of 2) •• What are the major comments?What are the major comments? – Content questions, Perhaps a lack of literature – Unclear aims unsubstantiated conclusions, – Theoretically flawed •• What are the minor comments?What are the minor comments? – lay out, referencing, rewrite abstract, shorten, lengthen etc, further develop conclusion Responding to reviewers andResponding to reviewers and editors comments (2 of 2)editors comments (2 of 2) 1. Make all the changes you can. 2. Write a covering letter highlighting your response to the reviewers comments 1. Note where you have responded positively 2. Note where and why you have chosen not to respond to some comments. You cannot make all the changes, or may not feel it is appropriate to do so. 3. If in doubt talk to the editor – but be polite! Example of reviewers andExample of reviewers and editors commentseditors comments
  • 22. 11/7/2013 21 Rejected with comments May resubmit if address commentsAccepted!! Submit it somewhere else Address comments & resubmit Submit it somewhere else SUBMIT ARTICLE Possible reviewers’ commentsPossible reviewers’ comments Rejected no review Types of commentsTypes of comments 1. Valid criticisms that are easy to address 2. Valid criticisms that are hard to address 3. Invalid criticisms that you can show are invalid (respectfully!) 4. Matters of opinion (not valid) Valid criticisms that are hard toValid criticisms that are hard to addressaddress Reviewer’s Comment: Hepatitis A virus was detected by PCR but it has been shown that the primers used in this study have homology with the pol gene of the Hepatitis C virus. Thus, these results may not be specific for Hepatitis A virus. Try to address the limitationTry to address the limitation Valid criticisms that are easy toValid criticisms that are easy to addressaddress Reviewer’s Comment: When discussing the prevalence of dengue virus, there was no mention of the prevalence of dengue virus by age group. I think this would be useful information. Find the information and include it!!!!Find the information and include it!!!!
  • 23. 11/7/2013 22 Invalid criticismsInvalid criticisms that you can show are invalidthat you can show are invalid • Sometimes the reviewer has obviously misunderstood something - but make sure YOU didn’t misunderstand the reviewer! • Tactfully answer: “We have further clarified this statement.” Have a good attitudeHave a good attitude • Be thankful to receive comments Comments = Improvements of you manuscript • Graciously recognize the importance of a comment and address it Do you need to do moreDo you need to do more experiments?experiments? • If the reviewers’ requests are valid: Do the additional experiments as soon as possible! Resubmit • BUT - You can try to persuade the editor that the current collection of data is sufficient. - One paper can’t answer every question. The next paper will address further questions. Reviewer #1 to Comment #4 ”..sample volume. The current trend is to use smaller sample volumes." We have sought to maintain the volume that would be more consistent with using existing ELISA reagents and clinical serum samples. We currently use a sample volume of 150 ul but have tested smaller sample volumes (e.g., 50 ul) with some success. Our experimental results indicate that the 150 ul volume works best for magnetic washing and serum sample dilutions as well as maximizes sensitivity. Itemized response to reviewersItemized response to reviewers
  • 24. 11/7/2013 23 Reviewer #2, As magnetic washing is a crucial step in this manuscript, it needs to be further described in the introduction. Comment We agree that we should have been more specific about the references for magnetic washing. We have added the references that we believe are the first references to magnetic washing using magnetic particles on a integrated circuit sensor to the text (Page 4, line 6). Itemized response to reviewers andItemized response to reviewers and BeBe specificspecific Reviewer #1 Page 11, lines 241-244: The percentage of the de novo synthesis and inhibitory effects should be indicated, including range of deviation (indicate whether SD or SEM is presented). Comment The percentage of both de novo synthesis and the inhibitory effect of Puromycin are now indicated in Figure 2a. The error bars are representing SD, which is now specified in text (page 11, line 243) and in legend of figure 2. Itemized response to reviewersItemized response to reviewers Examples in methods section Itemized response to reviewersItemized response to reviewers • List each reviewer’s comments • Point out the page and section of the manuscript that is being discussed. • Address each point. If you made a change: - Show it - Include the new text in your response • If you didn’t make a change, say why not. How to write point by pointHow to write point by point response to reviewer comment.response to reviewer comment. • Start with a positive statement. e.g: Thank you for taking the time to review this paper. We have addressed all of your comments, as described in the dialogue below. In summary, we have performed a ...
  • 25. 11/7/2013 24 A point by point answers to reviewers’ comments • Thank you for taking the time to review this paper. We have addressed all of your comments, as described in the dialogue below. In summary, we have performed all mistakes and suggestions as recommended by the reviewers and marked in red. ResubmissionsResubmissions Make sure you include: • Cover letter - Clarify it is a resubmission - Point out that the reviewers’ comments were addressed • Itemized response to reviewers • New version of the manuscript - paper/disc format (read instructions!) • Include the same items that you included in the first submission Ref: K. LaMarco & R. Ward • Reviewer #2: All results are summarized in Tables 1 and 2 ; duplicating the presentation in the form of Figs. 1-4 does not surve any additional purpose. Thus all Figs. should be deleted. Either keep t the Figs. Or Tables. Not both. Tables have been removed from the manuscript as recommended by the reviewer • For such small number of observations the introduction is too lengthy. This should be concise and short. The introduction section has been shortened as suggested Continued: • better presentation combine Results and Discussion and present a concise version. We agree perfectly with the reviewer, the results and discussion sections have been shortened and combined as one section as suggested. • No need to describe methods in details. A brief description with appropriate reference will suffice. Methods description has been shortened
  • 26. 11/7/2013 25 • There are still a few kinks in English. Get these straightened out. Written English has been improved along the manuscript. • The statistical analysis should include "Student's t-test". Student's t-test is already used for the statistical analysis together with ROC and Pearson correlations. Please see page 7. Resubmissions • Make sure you include: • Cover letter - Clarify it is a resubmission - Point out that the reviewers’ comments were addressed • Itemized response to reviewers • New version of the manuscript - paper/disc format (read instructions!) • Include the same items that you included in the first Resubmit and waitResubmit and wait • If it is rejected after you have addressed the reviewers’ comments: – DON’T GIVE UP! Maybe you need to do a few more experiments. Maybe not! – Try another journal – Learn from the reviewers’ comments • Don’t give up until you successfully publish your paper! – It’s important to share your results with the scientific community – Have patience and confidence Role of the PublisherRole of the Publisher • Editorial management – acquisition of content – monitor research trends – monitor editorial office efficiency – monitor key success indicators – editorial renewal • Business management • Production and online hosting • Sales and marketing Solicit and manage submission s Manage peer review Productio n Publish and dissemin ate Edit and prepare Archive and promote
  • 27. 11/7/2013 26 eTransformation 101 = print = print + electronic = eOnly • In the 1990s, Elsevier made a huge technology investment to build ScienceDirect, launched in 1997 • Revolutionize the way researchers access information •Desktop access •Articles in Press • Change the traditional job scopes of libraries •Usage analysis •Interaction with users 1997 1999 2001 2003 2005 Why Papers get Early RejectionWhy Papers get Early Rejection (Part 1)(Part 1) Aims and scope • Paper is of limited interest or covers local issues only (sample type, geography, specific product, etc.). • Paper is a routine application of well- known methods • Paper presents an incremental advance or is limited in scope • Novelty and significance are not immediately evident or sufficiently well- Why Papers get Early RejectionWhy Papers get Early Rejection (Part 2)(Part 2) Preparation • Failure to meet submission requirements • Incomplete coverage of literature • Unacceptably poor English Rejection: not the end of theRejection: not the end of the worldworld • Everyone has papers rejected – do not take it personally. • Try to understand why the paper was rejected. • Note that you have received the benefit of the editors and reviewers’ time; take their advice seriously • Re-evaluate your work and decide whether it is appropriate to submit the paper elsewhere.
  • 28. 11/7/2013 27 • Never treat publication as a lottery by resubmitting a rejected manuscript directly to another journal without any significant revision!!! It won’t save any of your time and energy… • The original reviewers (even editors) may eventually find it, which can lead to towards the author. • A suggested strategy – In your cover letter, declare that the paper was rejected and name the journal. – Include the referees’ reports and a detailed letter of response, showing how each comment has been addressed. – Explain why you are resubmitting the paper to this journal, e.g., this journal is a more appropriate journal; the manuscript has been improved as a result of its previous review; etc. What gets you accepted? •• AAttention to details •• CCheck and double check your work •• CConsider the reviews •• EEnglish must be as good as possible •• PPresentation is important •• TTake your time with revision •• AAcknowledge those who have helped you •• NNew, original and previously unpublished •• CCritically evaluate your own manuscript •• EEthical rules must be obeyed …and my publishing advice is as follows: • Submit to the right journal (scope and prestige) • Submit to one journal only • Do not submit “salami” article • Pay attention to journal requirements • Pay attention to structure • Check the English • Pay attention to ethical
  • 29. 11/7/2013 28 Ethical Issues Unethical behavior could lead to rejectionUnethical behavior could lead to rejection of your manuscriptof your manuscript Unethical behavior includes: •Multiple submissions •Plagiarism •Data fabrication and falsification •Improper use of human subjects and animals in research •Improper author contribution Multiple submissions • Multiple submissions save your time but waste editors’ The editorial process of your manuscripts will be completely stopped if the duplicated submissions are discovered “It is considered to be unethical…We have thrown out a paper when an author was caught doing this. I believe that the other journal did the same thing” James C. Hower, Editor, International Journal of Coal Geology Plagiarism “Plagiarism is the appropriation of another person’s ideas, processes, results, or words without giving appropriate credit, including those obtained through confidential review of others’ research proposals and manuscripts”
  • 30. 11/7/2013 29 Plagiarism “Presenting the data or interpretations of others without crediting them, and thereby gaining for yourself the rewards earned by others. Bruce Railsback, Professor, Department of Geology, University of Georgia Paraphrasing • Original (Gratz, 1982): Bilateral vagotomy resulted in an increase in tidal volume but a depression in respiratory frequency such that total ventilation did not change. • Restatement 1: Gratz (1982) showed that bilateral vagotomy resulted in an increase in tidal volume but a depression in respiratory frequency such that total ventilation did not change. Ronald K. Gratz. Using Other’s Words and Ideas. Department of Biological Sciences, Michigan Technological University Paraphrasing • Original (Buchanan, 1996): What makes intentionally killing a human being a moral wrong for which the killer is to be condemned is that the killer did this morally bad thing not inadvertently or even negligently, but with a conscious purpose – with eyes open and a will directed toward that very object. • Restatement 2: Buchanan (1996) states that we condemn a person who intentionally kills a human being because he did a "morally bad thing" not through negligence or accident but with open eyes and a direct will to take that life. Unethical research • Experiments on human subjects or animals should follow related ethical standards, namely, the Helsinki Declaration of 1975, as revised in 2000 (5). • If doubt exists concerning the compliance of the research with the Helsinki Declaration, authors must explain the rationale for their approach and demonstrate approval from the institutional review body.
  • 31. 11/7/2013 30 How to Submit Papers to ISI Journals www.sciencedirect.com Online submission of your manuscript