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Genome                                       Coat                                                      Additional                     Genome
                                                                                       Example          Resulting                                                    Replica-
                     Approx.          Fragmen-    Capsid       Capsid                                                     proteins       Life cycle      infect-                   Other
 Type        Family                                                     Envelope       species           disease                                                       tion
                       size             tation    shape         size                                                      present                         ious?
                                                                                                       tumours in
                                                                                     polyomavirus
             papova-                                                                                     rodents
              viridae       5-8kbp:                                                                    tumours in
                                         -       icosahedral   50nm        -             SV40                                -
             (papilloma-
                             small                                                                       rodents                                                             * stimulate
              polyoma-
             vacuolating)                                                                                 warts,                                                             cell into cell
                                                                                    papillomavirus
                                                                                                       carcinoma                                                             cycle!
              adeno-        35kbp:                                                                                                                                           * herpes
                                         -       icosahedral   80nm        -          adenovirus       resp disease          -
              viridae       medium                                                                                                                                           viruses
                                                                                                                                       1. uncoating
                                                                                    herpes simplex,    cold sores,                                                           incease the
                                                                                                                                       2. DNA to nuc
                                                                                      type 1 + 2     genital lesions                                                         prod of
                                                                                                                                       3. replication     DNA
                                                                                                      chicken pox,                                                   nucleus dNTPS
                                                                                    varicella-zoster                                   4. RNA to cp    infectious
                                                                                                         shingles                                                            * can cause
                                                                                                                                       5. prot.to nuc
                                                                                                        glandular                                                            latent
                                                                                                                                       6. Assembly
                                                                                     epstein-barr     fever, burkitt                                                         infection
             herpes-        150kbp:                                                                                                    with DNA in nuc
                                         -       icosahedral   120nm       -                           lymphoma              -                                               * consist of
 dsDNA       viridae         large
                                                                                                       cytomegalic                                                           extrachomos
 (lytic!)
                                                                                     cytomegalo-        inclusion                                                            omal circular
                                                                                         virus          disease in                                                           DNA
                                                                                                        neonates
                                                                                        human            kaposi's
                                                                                     herpesvirus 8       sarcoma
                                                                                        viriola         smallpox
                                                                                                                          virion
                                                                                                                      transcriptase:                                              * produce
                                                                                                                                       1. uncoating
                                                                                                                     DNA-dependent                                                 EGF that
                                                                                                                                       2. Make mRNA
                            200kbp:                             200-                                                       RNA                           DNA not      cyto-      stimulates
            pox-viridae                  -        complex                  +                         vaccine against                   3. translate
                             large                             300nm                    vaccina                        polymerase,                      infectious    plasm      neighbour-
                                                                                                        smallpox                       4. Assemble
                                                                                                                       capping and                                              ing cells into
                                                                                                                                       and release
                                                                                                                     polyadenylating                                              cell cycle!
                                                                                                                         enzymes

  dsDNA     hepaDNA-                                                                                    acute and
with RNA      viridae        3kbp:                                                                       chronic                                                                * DNA->RNA-
                                         -       icosahedral   20nm        +          hepatitis B                            -                              ?        nucleus
intermedi    reversi-        small                                                                    hepatitis, liver                                                          >cDNA
    ate      viruses                                                                                     cancer

                                                                                                      childhood rash                                                         * most
                             5kb:                                                       human
 ssDNA      parvo-virus                  -       icosahedral   20nm        -                            (erythema            -                              ?        nucleus strands infect
                             small                                                    parvovirus
                                                                                                       infectiosum)                                                          animals




         C.Riedinger                                                               Overview of Viruses
Genome                                           Coat                                                       Additional                    Genome
                                                                                           Example         Resulting                                                   Replica-
                     Approx.             Fragmen-     Capsid       Capsid                                                      proteins       Life cycle     infect-                  Other
Type         Family                                                         Envelope       species          disease                                                      tion
                       size                tation     shape         size                                                       present                        ious?

            papova-
           reo-viridae         20kbp:      10-11                                            human        acute infantile         virion
dsRNA         viridae
            (resp. enteric     5-8kbp:               icosahedral   70nm        -
             orphan virus)     medium    fragments
                                             -       icosahedral   50nm        -           rotavirus     gastro-enteritis    transcriptase
                                                                                                                                    -
              (papilloma-
                                small                                                                                                                                              * stimulate
               polyoma-
             vacuolating)
                                                                                           poliovirus    poliomyelitis                                                             cell into cell
            picoRNA-                                                                                                                                                               cycle!
                                                                                          hepatitis A   acute hepatitis                                                              * negative
             viridae            7kb:                                            -                                                                                                  * herpes is
                                             -       icosahedral   25nm                    rhinovirus    common cold                                                                  strand
           (small RNA virus)    small                                         lytic                                                                                                viruses to
                                                                                        foot and mouth foot and mouth                      1. uncoating                               made
                                                                                            disease         disease                                                                incease the
                                                                                                                                                                                      generate
                                                                                                                                           2. DNA to nuc
                                                                                                            winter                                                                 prodmore
                                                                                                                                                                                          of
                                8kb:                                            -                                                          3. replication     DNA
           calici-viridae                    -       icosahedral   35nm                    norovirus       vomiting                                                     nucleus    dNTPS
                                                                                                                                           4. RNA to cp    infectious cytoplas        template
            (calyx/goblet)      small                                         lytic                                                                                                * can non-
                                                                                                            disease                                                                     * cause
                                                                                                                            RNA-dependent 5. prot.to nuc              m,as +ve     latent
                                                                                                                                                                                     enveloped
                                                                                                            german          RNA polymerase 6. Assembly                    RNA      infection
                                                                                            rubella                                        1. uncoating
                                                                                                                                           with DNA in nuc                          RNA-viruses
                                                                                                            measles                                                      direct    * consist of
dsDNA                                                                                                                                      2. Translation                              are lytic
  +ve                                                                                                                                                         RNA     template,    extrachomos
(lytic!)       toga-                                                                                        acute and                      into RNA pol                              * mRNA is
ssRNA                       11kb:                                                                                                                          infectious     can      omal circular
           viridae, flavi-                   -       icosahedral   60nm        +          hepatitis C         chronic                      and capsid                               polycistronic
                           medium                                                                                                                                      replicate   DNA
              viridae                                                                                        hepatitis                     proteins                                  * picoRNA
                                                                                                                                                                           in
                                                                                          yellow fever    jungle yellow                    3. Assembly                                viruses
                                                                                                                                                                      enucleate
                                                                                         (ZOONOTIC!)           fever                       and release                                 stable
                                                                                                                                                                         d cells
                                                                                           west nile       encephalitis                                                             outside the
                                                                                                                                                                                        host
                                                                                                                                                                                     * an get
                                                                                                          severe acute                                                              hepA from
             corona-            30kb:                                                                                       RNA-dependent
                                             -         helical     140nm       +             SARS          respiratory                                                               food and
             viridae           medium                                                                                       RNA polymerase
                                                                                                            syndrome                                                                   water




        C.Riedinger                                                                    Overview of Viruses
Genome                                              Coat                                                          Additional                         Genome
                                                                                                      Example         Resulting                                                      Replica-
                        Approx.            Fragmen-         Capsid       Capsid                                                         proteins          Life cycle       infect-                 Other
  Type          Family                                                              Envelope          species          disease                                                         tion
                          size               tation         shape         size                                                          present                             ious?
                                                                                                                                                       * HA envelope
             papova-
              ortho-                                                                                                                                   protein binds
                                 12kb:                                                                                                     virion
              viridae
            myxoviridae         5-8kbp:   8 fragments       helical       80nm          +             influenza       influenza                        sialic acid
                                medium          -         icosahedral     50nm          -                                                     -
                                                                                                                                       transcriptase
                (papilloma-
              (mxyo - mucus)     small                                                                                                                 * enters by                            * stimulate
                 polyoma-
                vacuolating)                                                                                                                           endocytosis!                           cell into cell
                                                                                                                                                                                              cycle!
                                                                                                                                                                                              * herpes
                                                         helical (but                                                                                                                           * influenza
                                                                                                                                                                                              viruses
                                                                                                      measles          measles                         1. uncoating
                                                         pleiomorphi                                                                                                                          virus unique:
                                                                                                                                                                                              incease the
   -ve        para-              15kb:                                                                                                     virion      2. DNA to nuc   * RNA not     cytoplas
                                                -            c, i.e.      150m          +                                                              1. Make mRNA                           prod RNA
                                                                                                                                                                                                     of
 ssRNA      myxoviridae         medium                                                                                                 transcriptase   3. replication   infectous
                                                                                                                                                                           DNA          m
                                                           different                                                                                   from -ve strand                        processing in
                                                                                                                                                                                     nucleus dNTPS
                                                                                                                                                       4. RNA to cp    infectious
                                                           shapes)                                  mumps              mumps                           2. translation                             nucleus
                                                                                                                                                                                              * can cause
                                                                                                                                                       5. prot.to nuc
                                                                                                  respiratory                                          3. Assembly                            latent
                                                                                                                      bronchitis                       6. Assembly
                                                                                                synycytial virus                                       and release                            infection
                                                                                                                                                       with DNA in nuc
                                                                                                                                                                                              * consist of
 dsDNA                                                      helical
               rhabdo-                                                                                 rabies                                                                                 extrachomos
 (lytic!)                        10kb:                      capsid,     200x80n                                                            virion
                viridae                         -                                       +           (ZOONOTIC)          rabies                                                                omal circular
                                 small                      bullet-        m                                                           transcriptase
              (rhabdo = rod)                                                                                                                                                                  DNA
                                                            shaped


                                                                                                                                                                                                * reverse
                                                                                                                                                                                                transcription!
                                                                                                                                                                                                Envelope
                                                                                                                                                       * input RNA
                                                                                                                                                                                                protein
                                                                                                                                                       converted to
                                                                                                                                                                                                GP120 +
                                                                                                                                                       dsDNA
   +ve                                                                                                                 Acquired                                                                 CD4/coR on
                retro-                                                                                                                                 (provirus) to be
  ssRNA                                                                                                human          immuno-                                                                   T-cells/macro
                viridae          8kb:                                                                                                      virion      integrated into
with DNA                                        -              ?         100nm          +           immunodeficie     deficiency                                                                * envelope
               reversi-          small                                                                                                 transcriptase   host
intermedi                                                                                             ncy HIV         syndrome                                                                  protein
               viruses                                                                                                                                 chromosome
    ate                                                                                                                 AIDS                                                                    enters by
                                                                                                                                                       * packaging in
                                                                                                                                                                                                FUSION!
                                                                                                                                                       cytoplasm as
                                                                                                                                                                                                * can spread
                                                                                                                                                       RNA packed
                                                                                                                                                                                                as cell-
                                                                                                                                                                                                associated
                                                                                                                                                                                                virus

                                                                                                                                                                                                   * can be
  dsDNA       hepaDNA-                                                                                                acute and
                                                                                                                                                                                                   latent if
with RNA        viridae          3kbp:                                                                                 chronic
                                                -         icosahedral     20nm          +            hepatitis B                             -                                                  proviral DNA
intermedi      reversi-          small                                                                              hepatitis, liver
                                                                                                                                                                                                      not
    ate        viruses                                                                                                 cancer
                                                                                                                                                                                                 transcribed
underlined:                    these viruses cause persisten infection that can lead to neoplasia
         C.Riedinger                                                                           Overview of Viruses

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Overview of viruses and their properties

  • 1. Genome Coat Additional Genome Example Resulting Replica- Approx. Fragmen- Capsid Capsid proteins Life cycle infect- Other Type Family Envelope species disease tion size tation shape size present ious? tumours in polyomavirus papova- rodents viridae 5-8kbp: tumours in - icosahedral 50nm - SV40 - (papilloma- small rodents * stimulate polyoma- vacuolating) warts, cell into cell papillomavirus carcinoma cycle! adeno- 35kbp: * herpes - icosahedral 80nm - adenovirus resp disease - viridae medium viruses 1. uncoating herpes simplex, cold sores, incease the 2. DNA to nuc type 1 + 2 genital lesions prod of 3. replication DNA chicken pox, nucleus dNTPS varicella-zoster 4. RNA to cp infectious shingles * can cause 5. prot.to nuc glandular latent 6. Assembly epstein-barr fever, burkitt infection herpes- 150kbp: with DNA in nuc - icosahedral 120nm - lymphoma - * consist of dsDNA viridae large cytomegalic extrachomos (lytic!) cytomegalo- inclusion omal circular virus disease in DNA neonates human kaposi's herpesvirus 8 sarcoma viriola smallpox virion transcriptase: * produce 1. uncoating DNA-dependent EGF that 2. Make mRNA 200kbp: 200- RNA DNA not cyto- stimulates pox-viridae - complex + vaccine against 3. translate large 300nm vaccina polymerase, infectious plasm neighbour- smallpox 4. Assemble capping and ing cells into and release polyadenylating cell cycle! enzymes dsDNA hepaDNA- acute and with RNA viridae 3kbp: chronic * DNA->RNA- - icosahedral 20nm + hepatitis B - ? nucleus intermedi reversi- small hepatitis, liver >cDNA ate viruses cancer childhood rash * most 5kb: human ssDNA parvo-virus - icosahedral 20nm - (erythema - ? nucleus strands infect small parvovirus infectiosum) animals C.Riedinger Overview of Viruses
  • 2. Genome Coat Additional Genome Example Resulting Replica- Approx. Fragmen- Capsid Capsid proteins Life cycle infect- Other Type Family Envelope species disease tion size tation shape size present ious? papova- reo-viridae 20kbp: 10-11 human acute infantile virion dsRNA viridae (resp. enteric 5-8kbp: icosahedral 70nm - orphan virus) medium fragments - icosahedral 50nm - rotavirus gastro-enteritis transcriptase - (papilloma- small * stimulate polyoma- vacuolating) poliovirus poliomyelitis cell into cell picoRNA- cycle! hepatitis A acute hepatitis * negative viridae 7kb: - * herpes is - icosahedral 25nm rhinovirus common cold strand (small RNA virus) small lytic viruses to foot and mouth foot and mouth 1. uncoating made disease disease incease the generate 2. DNA to nuc winter prodmore of 8kb: - 3. replication DNA calici-viridae - icosahedral 35nm norovirus vomiting nucleus dNTPS 4. RNA to cp infectious cytoplas template (calyx/goblet) small lytic * can non- disease * cause RNA-dependent 5. prot.to nuc m,as +ve latent enveloped german RNA polymerase 6. Assembly RNA infection rubella 1. uncoating with DNA in nuc RNA-viruses measles direct * consist of dsDNA 2. Translation are lytic +ve RNA template, extrachomos (lytic!) toga- acute and into RNA pol * mRNA is ssRNA 11kb: infectious can omal circular viridae, flavi- - icosahedral 60nm + hepatitis C chronic and capsid polycistronic medium replicate DNA viridae hepatitis proteins * picoRNA in yellow fever jungle yellow 3. Assembly viruses enucleate (ZOONOTIC!) fever and release stable d cells west nile encephalitis outside the host * an get severe acute hepA from corona- 30kb: RNA-dependent - helical 140nm + SARS respiratory food and viridae medium RNA polymerase syndrome water C.Riedinger Overview of Viruses
  • 3. Genome Coat Additional Genome Example Resulting Replica- Approx. Fragmen- Capsid Capsid proteins Life cycle infect- Other Type Family Envelope species disease tion size tation shape size present ious? * HA envelope papova- ortho- protein binds 12kb: virion viridae myxoviridae 5-8kbp: 8 fragments helical 80nm + influenza influenza sialic acid medium - icosahedral 50nm - - transcriptase (papilloma- (mxyo - mucus) small * enters by * stimulate polyoma- vacuolating) endocytosis! cell into cell cycle! * herpes helical (but * influenza viruses measles measles 1. uncoating pleiomorphi virus unique: incease the -ve para- 15kb: virion 2. DNA to nuc * RNA not cytoplas - c, i.e. 150m + 1. Make mRNA prod RNA of ssRNA myxoviridae medium transcriptase 3. replication infectous DNA m different from -ve strand processing in nucleus dNTPS 4. RNA to cp infectious shapes) mumps mumps 2. translation nucleus * can cause 5. prot.to nuc respiratory 3. Assembly latent bronchitis 6. Assembly synycytial virus and release infection with DNA in nuc * consist of dsDNA helical rhabdo- rabies extrachomos (lytic!) 10kb: capsid, 200x80n virion viridae - + (ZOONOTIC) rabies omal circular small bullet- m transcriptase (rhabdo = rod) DNA shaped * reverse transcription! Envelope * input RNA protein converted to GP120 + dsDNA +ve Acquired CD4/coR on retro- (provirus) to be ssRNA human immuno- T-cells/macro viridae 8kb: virion integrated into with DNA - ? 100nm + immunodeficie deficiency * envelope reversi- small transcriptase host intermedi ncy HIV syndrome protein viruses chromosome ate AIDS enters by * packaging in FUSION! cytoplasm as * can spread RNA packed as cell- associated virus * can be dsDNA hepaDNA- acute and latent if with RNA viridae 3kbp: chronic - icosahedral 20nm + hepatitis B - proviral DNA intermedi reversi- small hepatitis, liver not ate viruses cancer transcribed underlined: these viruses cause persisten infection that can lead to neoplasia C.Riedinger Overview of Viruses