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- 1. romain@purrple.cat @romain_francois R / C++Romain FRANÇOIS #eRum2016
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- 3. AbsFilterGSEA accelerometry acebayes ACEt AdaptiveSparsity ADMMnet AhoCorasickTrie AHR alakazam algstat AlignStat ALKr Amelia anytime apcluster arrApply ASPBay aSPU autovarCore BaBooN BacArena BalancedSampling BAMMtools Barycenter batman bayesAB BayesBD BayesComm BayesFactor bayesm bayou bcp bcpa beanz BEDMatrix BeviMed bfa bfp bifactorial bife BIFIEsurvey biganalytics bigFastlm biglasso bigmemory BigQuic bigReg bigtabulate BigVAR bio3d Biocomb BIPOD biwavelet blackbox blockcluster blockmodels blockseg bmlm bnnSurvival bootTimeInference btb btf BTLLasso BTR BuyseTest bvarsv bWGR BWStest CARBayes CARBayesST catlearn ccaPP cccp ccdrAlgorithm cda CDF.PSIdekick CDM CFC cgAUC ChannelAttribution chopthin CIDnetworks cIRT cladoRcpp classify clere climdex.pcic clogitboost clogitL1 clusrank ClusterR ClusterStability clusteval ClustMMDD ClustVarLV CMF coala collUtils combiter CompGLM ConConPiWiFun coneproj contoureR copCAR cord CorReg Countr Coxnet CoxPlus cpgen cqrReg crawl creditr crmPack Crossover ctmcd cxxfunplus cycleRtools Cyclops D3M darch datafsm dbmss dbscan ddalpha ddR DDRTree deepboost Delaporte DeLorean dendextendRcpp densityClust DepthProc DescTools DetMCD DetR devtools dfcomb dfmta dfphase1 dfpk DiffusionRgqd DiffusionRimp DiffusionRjgqd dils dina disclapmix discretecdAlgorithm diversitree diveRsity DLMtool DNAprofiles DNAtools dnc dplyr drgee dslice DStree dtwclust easyVerification EBMAforecast ECctmc ecp EditImputeCont eggCounts eive EloChoice emil emIRT energy EPGLM erah ESGtoolkit EstHer evolqg EWGoF exif extraDistr factorstochvol fastAdaboost FastBandChol fastcmh fasteraster fastGHQuad FastGP FastHCS fastM FastPCS FastRCS FBFsearch fbroc FCNN4R fdaMixed fdapace fdasrvf FDGcopulas FDRreg feather FeatureHashing FIACH fICA FisHiCal FIT flam flan flars flip FLSSS forecast forega forestFloor fourierin fourPNO fractional frailtySurv FRESA.CAD fromo FSInteract fugeR FunChisq Funclustering futureheatwaves fwsim gamreg gapfill GAS gaselect gaston GauPro GCPM gdm gdtools GEEaSPU geiger GeneticTools genie GENLIB GenomicTools geoCount geohash GERGM ggrepel GiRaF gjam gkmSVM glamlasso glcm glmBfp glmgraph glmmsr GMCM Gmedian Gmisc gmum.r gmwm gMWT gogamer googleway GPareto gpuR GPvam gRain graphicalVAR graphql gRbase gRim growcurves growfunctions grpSLOPE GSE gsEasy GUILDS GUTS GxM h5 hashmap haven hawkes HDPenReg hierarchicalSets hit hkevp HLMdiag HSAR hsphase htdp htmltidy htmltools hts httpuv HUM humaniformat humarray hunspell hyperSpec hypervolume hyphenatr IAPWS95 iBATCGH IBHM ibm icamix ICAOD iccbeta icd icd9 icensmis icRSF ie2misc iemisc IHSEP iLaplace imager immer imputeMulti inarmix inca indelmiss inline IntegratedMRF iprior iptools IRTpp IsingSampler isoph ISOpureR IsoSpecR iterpc JacobiEigen JAGUAR jiebaR jmcm jmotif joinXL JOUSBoost jqr JSM jtGWAS kamila kdecopula kergp kernDeepStackNet KernelKnn KernSmoothIRT kmc kmeans.ddR Kmisc l0ara LaF LambertW lamW LANDD Langevin largeVis LassoBacktracking lasvmR lbfgs lcopula lfl lifecontingencies lm.br lme4 lowmemtkmeans lpme lsbclust lsgl lucr Luminescence magick mapview marked markophylo markovchain MAT matchingMarkets matchingR MatchItSE mateable MatrixCorrelation maxent mbbefd mcemGLM mcga mcIRT mcmcse mcPAFit MediaK MEGENA MESS metafolio MetaheuristicFPA meteoland mets mev mgm mice miceadds microclass milr minimaxdesign minqa mirt mirtCAT miscF miscset MiSPU missDeaths MixAll MixedDataImpute mixedMem mixpack mkde mlmc mlxR mmand ModelMetrics Morpho move moveHMM mp Mposterior MPTinR MRS MSGARCH msgl MTS MultiBD multicool mvabund MVB mvcluster mvnfast mwaved myTAI nabor NAM ndjson ndl netcoh netdiffuseR NetRep NetSim neuroim ngspatial NHMM nmfgpu4R NNLM noncompliance nonlinearTseries NPBayesImpute NPflow odeintr oem OjaNP olctools OneArmPhaseTwoStudy onlinePCA ontologySimilarity openair OpenImageR OpenMx openxlsx optmatch orQA oXim PAC packcircles PACVB PAFit pander PanelCount partialAR pcalg pcIRT pdftools PedCNV pedometrics PenCoxFrail penMSM perccal PerMallows ph2bayes ph2bye phonics phybreak phylobase phylocurve phylosignal Pijavski plac planar plogr plotSEMM plyr poisDoubleSamp polyfreqs polywog PoweR PP PPtreeViz prclust precrec PReMiuM primes ProbitSpatial pROC prodlim ProFit ProNet propagate propr prospectr protolite prototest protViz pryr psd psgp purrr pvar PWD pystr qrencoder QRM quadrupen quanteda quantspec qVarSel qwraps2 radiomics rags2ridges ragt2ridges randomUniformForest ranger Rankcluster rankdist raster Rblpapi Rborist Rcereal Rclusterpp RcppAnnoy RcppAPT RcppArmadillo RcppBDT RcppCCTZ RcppClassic RcppClassicExamples RcppCNPy RcppDE RcppDL RcppEigen RcppExamples RcppFaddeeva RcppGetconf RcppGSL RcppHoney RcppMLPACK RcppNumerical RcppOctave RcppParallel RcppProgress RcppRedis RcppRoll RcppShark RcppSMC RcppStreams RcppTOML RcppXts RcppZiggurat rcss readr readstata13 readxl RealVAMS recexcavAAR recmap reconstructr recosystem redist rEDM regsem relSim rem remote ReorderCluster repolr resemble reshape2 revealedPrefs rexpokit Rfast rflann rforensicbatwing rFTRLProximal rgam rgeolocate RInside Rip46 ripa rivr rkvo Rlibeemd RLRsim Rmalschains rmgarch Rmixmod RmixmodCombi rmumps rncl RNifti RNiftyReg robustgam RobustGaSP robustHD robustreg rococo roll rollply rootWishart rotations RoughSets roxygen2 rpg Rphylopars rplexos rPref RProtoBuf RPtests RQuantLib RSNNS RSNPset Rsomoclu RSpectra RSSL rstan rstanarm RStoolbox rstpm2 rtk rtkore rtkpp Rtsne Ruchardet rugarch Rvcg rvg RVowpalWabbit rwfec rwirelesscom Ryacas saeRobust SAMM satellite saturnin sbfc sBIC sbmSDP sbrl SBSA scales SciencesPo scorer scoringRules scrm scrypt sdcMicro sdcTable SEERaBomb segmag seismicRoll SelvarMix seqHMM sequences sgd sglOptim sharpeRratio signalHsmm simFrame simmer simPop SimReg simstudy sirt sitmo slfm SLOPE smam smoof smooth SnakeCharmR snipEM snowboot snplist SocialNetworks SOD sourceR spacodiR spaMM SparseFactorAnalysis sparseHessianFD sparseLTSEigen sparsereg spass spatgraphs SpatialEpi SpatialTools SpatMCA SpatPCA spBayesSurv spduration spectral spray spsann SSL starma StatMethRank staTools steadyICA StepwiseTest StereoMorph stlplus stm StMoSim stochvol stocks stosim stplanr stpm strataG stream stremr strum SuperRanker survAccuracyMeasures surveillance surveybootstrap survSNP svglite SVMMatch synchronicity synlik synthACS systemicrisk tagcloud TAM TAQMNGR TauStar tbart tcR TDA tensorBSS termstrc TESS text2vec textmineR textreg textreuse TFMPvalue tibble tidyr timma tmg tmlenet tnam tokenizers TransferEntropy TreeBUGS devtools::revdep( "Rcpp") 8038.60 %
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BayesianNetwork BayesLCA bayesLife bayesm BayesMAMS bayesMCClust BayesMed bayesmeta bayesmix BayesMixSurv bayesPop bayespref bayess BayesSAE BayesSingleSub BayesSummaryStatLM bayesSurv bayesTFR Bayesthresh BayesTree BayesTreePrior BayesVarSel BayesX BayesXsrc BayHaz bayou BaySIC BAYSTAR BB bbemkr BBEST BBmisc bbmle BBRecapture bc3net BCA BcDiag BCE BCEA BCEE BCEs0 Bchron Bclim bcp bcpa bcRep bcrm bcrypt bde BDgraph bdots bdpopt bdrift bdscale bdvis BDWreg bdynsys BEACH beadarrayMSV beanplot beanz BEDASSLE BEDMatrix bedr beepr benchmark benchmarkme benchmarkmeData benford.analysis BEQI2 ber Bergm berryFunctions Bessel BEST bestglm BetaBit betalink betapart betaper betareg betas betategarch BeviMed bfa bfast bfork bfp bgeva bglm bgmfiles bgmm BGPhazard bgsmtr BHH2 bhm biasbetareg bib2df bibliometrix bibliospec biclust BiDimRegression bifactorial bife BIFIEsurvey bigalgebra biganalytics bigdata BIGDAWG bigFastlm bigGP biglars biglasso biglm bigmemory bigml bigpca bigQueryR BigQuic bigReg bigrquery bigRR BigSEM bigtabulate BigTSP BigVAR bikeshare14 bimixt BinaryEPPM binaryLogic binda bindata binequality binford bingat binhf BinNonNor BinNor binom binomen binomSamSize BinOrdNonNor binseqtest binst bio3d Biocomb BiodiversityR BIOdry BioFTF biogas biogeo BioGeoBEARS biogram Biograph bioinactivation biom BioMark biomartr BIOMASS biomod2 BioPET bioplots biorxivr bios2mds biosignalEMG BioStatR biotic biotools bipartite biplotbootGUI BiplotGUI BIPOD birdnik birdring bisectr BiSEp bisoreg BivarP BivUnifBin biwavelet biwt bizdays bkmr blackbox BlandAltmanLeh Blaunet blavaan BLCOP blender blkbox blkergm blme blmeco blockcluster blockmodeling blockmodels blockseg blockTools blscrapeR BMA bmd bmem bmeta BMhyd bmk bmlm bmmix bmp BNDataGenerator bnlearn bnnSurvival bnormnlr BNPTSclust bnspatial bnstruct bodenmiller BOG bold bookdown boolean3 BoolNet Boom BoomSpikeSlab boostmtree boostr boostSeq boot bootES bootLR bootnet bootRes bootspecdens bootsPLS bootStepAIC bootSVD bootTimeInference boottol BootWPTOS boral Boruta BoSSA boxoffice boxr bpa bpca bpcp BPEC bpkde BradleyTerry2 braidReports BrailleR brainGraph brainR braQCA breakpoint bReeze brewdata brglm bridgedist briskaR brm brms broman broom brotli brr brranching BRugs BSagri bsam BSDA BSGS BSGW bshazard BSquare BSSasymp bst bsts btb btergm btf BTLLasso BTR BTSPAS BTYD bujar bunchr burnr BurStMisc BuyseTest bvarsv BVS bWGR BWStest c060 c3net C50 ca CaDENCE CADFtest cAIC4 CALF CALIBERrfimpute calibrar calibrate CalibrateSSB callr calmate CAM CAMAN camel camtrapR cancerGI cancerTiming candisc Canopy CANSIM2R cape caper capm captioner captr capushe car CARBayes CARBayesdata CARBayesST carcass cardidates cardioModel care caret caretEnsemble CarletonStats caroline carpenter caRpools CARrampsOcl cartogram cartography carx caschrono catdata CatDyn cate catenary CatEncoders cati catIrt catlearn caTools catspec causaldrf causaleffect CausalFX CausalGAM causalsens Causata cba CBPS cbsodataR CCA ccaPP cccd ccChooser cccp cccrm ccda ccdrAlgorithm cchs CCMnet CCpop CCTpack cda cdcfluview cdcsis CDF.PSIdekick cdfquantreg cdlTools CDM CDNmoney cdom cds CDVine CEGO celestial cellranger cellVolumeDist cem cems censorcopula censReg CensSpatial censusGeography censusr CEoptim CePa CepLDA CerioliOutlierDetection CFC cffdrs cg cgam cgAUC cgdsr ChainLadder changepoint changepoint.np ChannelAttribution ChannelAttributionApp ChaosGame CHAT CheckDigit checkmate checkpoint chemCal chemometrics ChemometricsWithR ChemoSpec cherry chillR chipPCR chngpt CHNOSZ ChoiceModelR choplump chopthin chords choroplethr choroplethrAdmin1 choroplethrMaps chromer chromoR chron CHsharp chunked CIDnetworks CINOEDV circlize CircOutlier CircStats circular cIRT CITAN Cite citr cjoint ckanr Ckmeans.1d.dp cladoRcpp clarifai class classGraph classifly classify classInt classyfire cleangeo clere clhs clickstream clifro climatol ClimClass climdex.pcic climextRemes climwin clinfun clipr clisymbols CLME clogitboost clogitL1 clogitLasso CLSOCP clubSandwich clue ClueR clues CluMix clusrank cluster ClusteredMutations clusterfly clusterGeneration clusterhap clusternomics clusterPower ClusterR clusterSEs clusterSim ClusterStability clusteval ClustGeo clustMD ClustMMDD clustrd ClustVarLV clustvarsel clv clValid cmaesr CMF cmna CMPControl cmprsk cmprskQR cmrutils cmsaf cmvnorm cncaGUI CNOGpro CNprep CNVassoc coala coalescentMCMC coarseDataTools cobalt COBRA cobs CoClust cocor cocoreg cocorresp cocron coda codadiags codep codingMatrices codyn coefficientalpha coefplot coenocliner coenoflex cofeatureR CoImp coin CoinMinD cointmonitoR cointReg CollapsABEL CollocInfer collUtils coloc coloredICA colorfulVennPlot colorplaner colorscience colorspace colorSpec colourpicker comato COMBIA combiter CombMSC cometExactTest comf ComICS CommEcol commentr commonmark CommonTrend CommT COMMUNAL CommunityCorrelogram Comp2ROC CompareCausalNetworks compareDF compareGroups compeir compendiumdb compete CompGLM Compind complexplus complmrob compoisson Compositional compositions compound.Cox Compounding CompR CompRandFld concatenate ConConPiWiFun concreg cond condformat condmixt CONDOP condSURV condvis coneproj confidence config conformal confreq Conigrave conjoint ConnMatTools ConSpline ConsRank constrainedKriging ContaminatedMixt conting contoureR contrast controlTest ConvergenceConcepts convevol convey convoSPAT cooccur cooccurNet coop cooptrees copBasic copCAR cope copula CopulaDTA copulaedas CopulaRegression CopulaREMADA CopyDetect coRanking Corbi corclass cord corehunter CORElearn coreSim corHMM corkscrew CORM corr2D CorrBin CorrectOverloadedPeaks CorReg corregp Correlplot corrgram CorrMixed corrplot corrr CorrToolBox COSINE cosinor CosmoPhotoz cosso costat cotrend couchDB COUNT Counterfactual Countr countrycode CountsEPPM countytimezones COUSCOus covafillr covBM covLCA covmat covr CovSel CovSelHigh covTest cowplot cowsay CoxBoost coxinterval coxme Coxnet coxphf coxphw CoxPlus CoxRidge coxrobust CP cp4p cpca CPE CpGassoc cpgen cplm CPMCGLM Cprob cqrReg cquad crackR cramer crandatapkgs cranlogs crawl crayon crch creditr credule CRF cricketr crimelinkage crmPack crn CrossClustering crossmatch Crossover crossReg crossval crp.CSFP crqa crrp crrSC crrstep crs crskdiag crtests CRTgeeDR crunch cruts CrypticIBDcheck CryptRndTest csampling cSFM cshapes csp csrplus cssTools cstar csvy ctl CTM ctmcd ctmcmove ctmm ctqr ctsem CTTShiny cubfits Cubist cudaBayesreg cudia CUFF curl curlconverter currentSurvival curvetest curvHDR cusp customizedTraining cutoffR cvAUC CVST CVThresh cvTools CVTuningCov cvxbiclustr cvxclustr cwhmisc cwm cxxfunplus cycleRtools cyclocomp Cyclops cymruservices cyphid cystiSim cytoDiv D2C d3heatmap D3M d3Network D3partitionR DAAG DAAGbio DAAGxtras dad dae daewr daff DAGGER dagitty Daim DAKS DamiaNN DAMisc DAMOCLES dams DandEFA darch Dark darksky data.table data.tree DatABEL datacheck datacheckr DataCombine datadr DataExplorer datafsm DataLoader datamap datamart dataonderivatives dataone datapack dataRetrieval datarobot datastepr datautils dataview DATforDCEMRI dave dawai dbarts dbConnect DBEST dbhydroR DBI DBItest DBKGrad dbmss dbscan dbstats DCchoice dcemriS4 DCG DCGL dcGOR DCL dclone DCluster dcmle dcmr DCODE dCovTS dcv ddalpha DDD ddeploy DDHFm ddpcr ddR DDRTree ddst deadband deBInfer DecisionCurve decisionSupport decode decoder decompr deconstructSigs Deducer DeducerExtras DeducerPlugInExample DeducerPlugInScaling DeducerSpatial DeducerSurvival DeducerText deducorrect deductive deepboost deeplearning degreenet Delaporte DeLorean deltaPlotR Demerelate demi deming demography demoKde DEMOVA dendextend dendextendRcpp dendroextras dendrometeR DendSer dendsort DengueRT denoiseR denovolyzeR densityClust DensParcorr densratio denstrip DEoptim depmix depmixS4 depth DepthProc Deriv derivmkts desc descomponer descr DescribeDisplay describer DescTools deseasonalize designmatch desiR desirability DESnowball DESP desplot detect detector DetMCD DetR detrendeR detzrcr Devore7 devRate devtools df2json dfcomb dfexplore DFIT dfmta dfphase1 dfpk dga dggridR dglm dgmb DHARMa dhga dhglm diagonals DiagrammeR DiagrammeRsvg DiagTest3Grp DiallelAnalysisR DiceDesign DiceEval DiceKriging DiceOptim DiceView DidacticBoost dielectric diezeit DIFboost Difdtl DiffCorr diffdepprop diffeR diffIRT diffobj diffr diffusionMap DiffusionRgqd DiffusionRimp DiffusionRjgqd DIFlasso difNLR difR DIFtree digest Digiroo2 digitize dils dina Directional directlabels directPA DirichletReg discgolf disclapmix DiscML discretecdAlgorithm discreteRV DiscriMiner discSurv diseasemapping DisimForMixed diskImageR dismo disp2D disparityfilter disposables dissUtils Distance distance.sample.size DistatisR distcomp distory distr distrDoc distrEllipse distrEx DistributionUtils distrMod distrom distrRmetrics distrSim distrTeach distrTEst divagis DivE diveMove diverse diversitree diveRsity DiversityOccupancy DivMelt divo dixon DJL DLASSO dlm dlmap dlmodeler DLMtool dlnm dlsem dlstats dma dml dmm dMod DMRMark dmt DMwR DMwR2 dna DNAprofiles DNAtools dnc dnet DNMF DOBAD doBy docopt docopulae docxtractr DODR DoE.base DoE.wrapper doFuture doMC Dominance domino doMPI doParallel doRedis doRNG DoseFinding doSNOW dosresmeta dostats DOT DoTC dotCall64 dotwhisker DoubleCone Dowd downloader downscale downsize dpa DPBBM dpcR dplR dplyr dpmixsim dpmr DPpackage dprep dr drat DRaWR DrBats drc drfit drgee DrillR DRIP drLumi dropR DRR drsmooth DrugClust dsample DSBayes dse dslice dsm DSpat DSsim DstarM DStree DSviaDRM DT dtables DTComPair dti dtplyr DTR DTRlearn dtw dtwclust dtwSat dualScale dvfBm DVHmetrics DWreg dygraphs DYM dyn dynamicGraph dynatopmodel dynaTree dynlm DynNom dynpred dynr dynRB dynsim dynsurv DynTxRegime DySeq e1071 eAnalytics earlywarnings earth earthtones EasyABC easyanova easyformatr EasyHTMLReport EasyMARK easypackages easypower easyVerification eba EBASS ebdbNet EBglmnet EBMAforecast EBS ecb ECctmc ecd Ecdat ecdfHT ecespa Ecfun ECharts2Shiny ecipex 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eyetrackingR ez ezec ezknitr ezsim ezsummary face FacPad FactMixtAnalysis FACTMLE FactoClass factoextra FactoMineR factorplot factorQR factorstochvol Factoshiny FADA Fahrmeir fail FAiR fakeR fame FamEvent Familias FAMILY fanc fanovaGraph fanplot FAOSTAT faoutlier far faraway farff fArma fAsianOptions fAssets fast fastAdaboost FastBandChol fastclime fastcmh fastcox fasteraster fastGHQuad FastGP FastHCS fastHICA fastICA FastImputation FastKM FastKNN fastM FastPCS fastR FastRCS fat2Lpoly FatTailsR FAwR fBasics fbati FBFsearch fBonds fbRads fbRanks fbroc fcd fCertificates FCGR FCMapper FCNN4R fCopulae FD fda fda.usc fdaMixed fdapace fdaPDE fdasrvf fdatest FDboost fdcov FDGcopulas fdrDiscreteNull FDRreg fds FeaLect feather feature FeatureHashing features FedData federalregister FeedbackTS feedeR FENmlm fermicatsR fExoticOptions fExpressCertificates fExtremes ff ffbase FFD FField FFTrees fGarch Fgmutils FGN fgpt fheatmap FHtest FIACH fICA fields FieldSim fiery fifer filehashSQLite filematrix filenamer fImport FinancialInstrument FinCal FindIt FindMinIC findpython findviews FinePop finreportr FinTS FisherEM FisHiCal fishmethods fishmove FIT fit.models fit4NM FitAR FitARMA fitbitScraper fitcoach fitdistrplus fitTetra fixedTimeEvents flacco flam flan flare flars flexclust flexCWM flexdashboard flexmix FlexParamCurve flexPM flexrsurv flexsurv FLIM flip FLLat flora flowDiv flowfield flowr flows FlowScreen flsa FLSSS flux fma FME fmri fmrs fMultivar FNN fNonlinear fontquiver foodweb fOptions forams forcats foreach ForeCA forecast ForecastCombinations forecastHybrid forecTheta forega forensic forestFloor forestinventory forestmodel forestplot ForImp formatR formattable formula.tools forward ForwardSearch fossil fourierin fourPNO fpa fpc fpca fpCompare fPortfolio fpp fracdiff fractal fractaldim fractalrock fractional frailtyHL frailtypack frailtySurv frair Frames2 franc FRAPO FRB frbs FRCC FREddyPro FreeSortR freestats freesurfer FREGAT fRegression freqdom freqparcoord FreqProf freqweights FRESA.CAD FrF2 FrF2.catlg128 frmqa fromo frontier frontiles FSA fscaret FSelector FSInteract fslr fso fSRM FTICRMS fTrading fts ftsa ftsspec fueleconomy fugeR fullfact fulltext FunChisq FunCluster Funclustering FuncMap functools funcy funData funFEM fungible funHDDC fUnitRoots funModeling funr funrar funreg funtimes furniture FusedPCA futile.any futile.logger futile.matrix future future.BatchJobs futureheatwaves fuzzr Fuzzy.p.value FuzzyAHP fuzzyforest fuzzyjoin FuzzyLP FuzzyMCDM FuzzyNumbers FuzzyR FuzzyStatProb FWDselect fwsim fxregime G1DBN g2f G2Sd GA GAabbreviate GABi GAD galts gam gamair GAMBoost gamboostLSS gamboostMSM gamclass GAMens games GameTheory GameTheoryAllocation gamlr gamlss gamlss.add gamlss.cens gamlss.demo gamlss.dist gamlss.mx gamlss.nl gamlss.spatial gamlss.tr gamlss.util gamm4 gammSlice gamreg gamsel gap gapfill gapmap gapminder GAR GAS gaselect gaston GauPro gazepath gb GB2 gbm gbm2sas gbts gcbd GCD gcdnet gcerisk gclus gcmr gcookbook GCPM GDAdata 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Rdice RDIDQ Rdistance RDML rDNA rDNAse rdnb RDocumentation rdomains rdrop2 rdryad RDS Rdsm RDSTK rDVR readbitmap readbulk reader readMzXmlData readODS readr readstata13 readxl RealVAMS reams Rearrangement REBayes rebird rebmix rebus rebus.base rebus.datetimes rebus.numbers rebus.unicode RECA recexcavAAR rechonest recluster recmap recoder recommenderlab recommenderlabBX recommenderlabJester reconstructr RecordLinkage recosystem red reda REdaS redcapAPI REDCapR RedditExtractoR redist redland rEDM REEMtree referenceIntervals RefFreeEWAS refGenome refimpact RefManageR refnr refset refund refund.shiny refund.wave regclass reGenotyper regexPipes regexr reglogit regress RegressionFactory regRSM regsel regsem rehh reinstallr relaimpo relations relaxnet reldist relevent ReliabilityTheory relimp relMix relSim relsurv RelValAnalysis rem rematch remix rEMM remote remoter remotes REndo Renext RenextGUI rentrez Reol ReorderCluster RepeatABEL RepeatedHighDim repijson replicatedpp2w replicationInterval repmis repo repolr ReporteRs reportr reportRx reports reporttools REPPlab repr represtools reproducer REPTILE request rerddap REREFACT reReg resemble reshape reshape2 reshapeGUI ResourceSelection respirometry REST restimizeapi restlos resumer rethinker retistruct retrosheet reutils reval revealedPrefs revealjs RevEcoR rex Rexperigen rexpokit Rfacebook Rfast RFc RFGLS RFgroove rfigshare RFinanceYJ RFinfer rfishbase rfisheries Rfit rflann RFLPtools RFmarkerDetector rfml rfoaas RFOC RForcecom rfordummies rforensicbatwing RFormatter rfPermute rFTRLProximal rfUtilities RGA rgam rgbif RGCCA rgdal RGENERATE RGENERATEPREC rgeolocate rgeos rgeospatialquality rgexf rggobi rgho rgl rglobi rglwidget RGoogleAnalytics RGoogleAnalyticsPremium RGoogleFit RgoogleMaps rgp rgpui rgr RGraphics rgrass7 rGroovy RGtk2Extras RH2 rhandsontable rHealthDataGov RHRV riceware rich ridigbio riem RImageJROI RImagePalette rinat RInside rintrojs rio rioja Rip46 ripa riskRegression risksetROC Ritc 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ROCS ROCt Rodam RODBCDBI RODBCext rodd rodham RODM ROI.plugin.ecos ROI.plugin.nloptr ROI.plugin.scs roll rollbar rollply ROMIplot rootWishart ropenaq ROpenFIGI ROpenWeatherMap ROptEst ROptEstOld ROptimizely ROptRegTS ROracle rorcid rorutadis ROSE rosetteApi rosm rotationForest rotations Rothermel rotl roughrf RoughSets roxygen2 RPANDA rpanel rpart rpart.plot rpart.utils rpartitions rpartScore rpcdsearch RPCLR Rpdb rpdo RPEnsemble rpf rpg rphast Rphylip Rphylopars rpinterest rpivotTable rPlant rplexos rplos rplotengine RPMM rpn rpnf rportfolios rpostgis RPostgreSQL RPPanalyzer rpql rPref RPresto rprev rprime rprintf rprojroot RProtoBuf rpsftm RPtests rptR rpubchem RPublica RPyGeo RQDA RQGIS rqPen Rquake RQuantLib rr rRAP rrcov rrcovHD rrcovNA rrecsys rredlist RRedshiftSQL rrefine rrepast RRF rriskDistributions rrlda RRreg RRTCS RSA rsae RSAGA Rsampletrees Rsampling RSAP rSARP rsatscan RSauceLabs RSCABS rscimark rsconnect rscopus rscorecard RSDA rsdmx RSeed RSelenium rsem RSentiment rSFA rsgcc rsggm RSiena rsig RsimMosaic RSiteCatalyst RSKC rslp rslurm rsm RSMET rsml RSNNS rsnps RSNPset RSocrata Rsomoclu rspa rSPACE RSpectra RSPS rsq RSQLite RSQLServer Rssa RSSL rstack rstackdeque rstan rstanarm rstatscn RStoolbox RStorm rstpm2 RStripe rstudioapi rsunlight RSurveillance RSurvey rsvd rsvg rtable rTableICC RTDE rtdists rtematres Rtextrankr RTextTools rtf rtfbs rticles rtide rtimes rtip rtk rtkore rtkpp RTOMO rtop RTriangle rts Rtsne rtson RtutoR rtweet rtype rtypeform Ruchardet rucm rugarch rUnemploymentData runittotestthat runjags RunuranGUI rusda rust RVAideMemoire Rvcg rvcheck rversions rvertnet rvest RVFam rvg rvgtest RVideoPoker RViennaCL RVowpalWabbit RVPedigree RVsharing RVtests rWBclimate RWBP RWebLogo RWeka rwfec RWiener rwirelesscom rworldmap rworldxtra rwty rwunderground RxCEcolInf RxnSim RxODE Ryacas RYandexTranslate ryouready rYoutheria rysgran Rz RZabbix s2dverification s4vd saasCNV saccades SACOBRA sadists sads sae sae2 SAENET saeRobust saeSim SafeQuant SAGA sAIC SALES SALTSampler SAMM SamplerCompare sampleSelection samplesize4surveys sampling samplingbook SamplingStrata sampSurf samr SAMUR SAMURAI sand sandwich sankey sapa SASmixed SASxport satellite saturnin SAVE saws sbfc sBIC sbmSDP SBRect sbrl SBSA sbtools sca Scale scales scalreg scam scanstatistics scape scaRabee scatterD3 SCBmeanfd scdhlm scenario SCEPtER SCEPtERbinary SCGLR SchemaOnRead scholar schoRsch schumaker SCI scidb SciencesPo scientoText SciViews sclero scmamp score scorer scoring scoringRules ScottKnottESD scphaser ScrabbleScore ScreenClean scrime scrm scrubr scrypt scs sda SDaA sdcMicro sdcMicroGUI sdcTable sdcTarget SDD SDDE sde SDEFSR sdm SDMPlay SDMTools sdmvspecies sdPrior SDraw sdwd seacarb searchable searchConsoleR seas season seasonal seawaveQ SEchart SECP secr secrdesign secrlinear seeclickfixr seeg SEERaBomb seewave seg segmag seismicRoll sejmRP SEL selection selectiveInference selectMeta selectr selectspm SeleMix seleniumPipes selfea selfingTree SelvarMix sem semdiag semds semGOF semiArtificial SemiCompRisks SEMID SemiMarkov SemiPar SemiParBIVProbit SemiParSampleSel semisupKernelPCA semPlot semPLS semsfa semTools sensiPhy sensitivity sensitivityPStrat SensMixed SensoMineR sensory sensR SenSrivastava SensusR sentimentr separationplot seqCBS seqDesign SeqFeatR SeqGrapheR seqHMM seqinr SeqMADE seqMeta seqminer sequences seriation seroincidence servr sesem SetMethods SetRank sets setter settings sExtinct sfc sFFLHD sfinx sfsmisc sft SGCS sgd sglasso sglOptim sglr SGP sGPCA SGPdata sgPLS sgr sgt shades ShapeChange ShapePattern shapeR shapes ShapeSelectForest SharpeR sharpeRratio sharpshootR sharx shazam SHELF shiny shinyAce shinybootstrap2 shinyBS shinydashboard shinyDND shinyFiles ShinyItemAnalysis shinyjs shinyLP shinyRGL shinystan shinythemes shinyTime shinytoastr shinyTree SHLR shock shopifyr shotGroups showtext showtextdb shp2graph shrink siar SIBER SID sideChannelAttack SIDES sidier sigloc sigmoid signal signalHsmm SigTree SII Sim.DiffProc simba simboot simcausal SimComp SimCorMultRes SimDesign simecol simex simexaft simFrame SimHaz SimInf simLife simmer simmr SIMMS simMSM simPATHy simPH simpleboot simplegraph simpleNeural simpleRCache SimpleTable simplr simPop Simpsons simputation simr SimRAD SimReg simrel SiMRiv simsalapar simsem simstudy simTool SimuChemPC simulator sinaplot siplab sirad siRSM sirt SIS sisal sisus sisVIVE sitar sitmo sivipm SixSigma SizeEstimation sizeMat SiZer sjmisc sjPlot sjstats skeleSim skellam SkewHyperbolic Skillings.Mack skmeans sla slackr Sleuth2 Sleuth3 slfm SLOPE slp sm smaa smacof smacpod smallarea smam smapr smart SmarterPoland SmartSifter smatr smbinning smcfcs smcure smcUtils smdc smds sme smerc SMFI5 smint SMIR Smisc SmithWilsonYieldCurve SML SMNCensReg smnet smoof smooth smoothAPC smoother SmoothHazard smoothHR smoothie smoothmest smoothSurv smoothtail smotefamily SMPracticals sms smss sna SnakeCharmR snht snipEM snowboot snp.plotter SNPassoc snpEnrichment snplist sNPLS SNPMClust snpRF snpStatsWriter sns SNscan SNSequate soc.ca SocialMediaLab SocialMediaMineR SocialNetworks SOD sodavis SODC sodium Sofi softImpute SOIL soil.spec soilDB soilphysics soilprofile SoilR soiltexture soilwater solaR solarius solr solrium soma SOMbrero sommer somplot soobench sophisthse SOPIE soql SOR SortableHTMLTables sortinghat sorvi sos sos4R sotkanet soundecology SoundexBR SOUP sourceR sourcetools SoyNAM sp sp23design sp500SlidingWindow spa spaa SPACECAP spaceExt spacejam spacetime spacodiR spacom spAddins SpaDES spaero spam spaMM spanr spareserver spark sparklyr sparkTable sparr sparseBC sparsebn sparsebnUtils sparsediscrim SparseFactorAnalysis SparseGrid sparseHessianFD sparseLDA SparseLearner sparseLTSEigen sparseMVN sparsenet sparsereg sparsesvd SparseTSCGM sparsevar spartan spass spatgraphs spatial spatial.gev.bma spatial.tools spatialClust spatialEco SpatialEpi SpatialExtremes spatialfil spatialnbda SpatialNP SpatialPack SpatialPosition spatialprobit spatialsegregation spatialTailDep SpatialTools SpatialVx SpatioTemporal SpatMCA SpatPCA SpATS spatstat spatsurv spbabel spBayes spBayesSurv spcadjust SPCALDA spcosa spd spdep spdplyr spduration spdynmod SpecHelpers speciesgeocodeR SpeciesMix specificity specmine spectral spectral.methods SpectralMap spectrino SPEDInstabR speedglm spef speff2trial SPEI sperich sperrorest spex spfrontier spgrass6 spgwr sphereplot SphericalCubature SpherWave sphet spider spiders SPIGA spikes spikeslab spikeSlabGAM splancs splines2 splitfngr splitstackshape splm spls spm12r spnet spocc SPODT SportsAnalytics SPOT spray SPREDA SPreFuGED sprex sprint sprinter sprm spsann spselect spsi SPSL spsmooth spsurvey spTDyn spTest spThin spTimer sptm spuRs sqldf sqliter SqlRender sqlutils SQN squid SRCS srd srvyr ss3sim ssc sscor SSDforR SSDM sSDR ssfa ssfit ssh.utils ssizeRNA SSL ssmn ssmrob SSN sspse SSRA SSrat SSRMST sss SSsimple ssym st stabledist StableEstim stablespec stabs Stack stacomirtools StagedChoiceSplineMix stagePop stam StAMPP STAND StanHeaders STAR starma stashR statar statcheck statcomp StatDA statebins stationaRy StatMatch StatMeasures StatMethRank statmod statnet statnetWeb sta devtools::revdep( "Rcpp", recursive = TRUE) 684473.34 %
- 5. *.h 94390 *.cpp 5575 99965 *.R 3134
- 6. motivation
- 7. int add( int a, int b ){ return a + b ; }
- 8. C/R API
- 9. int add( int a, int b ){ return a + b ; } #include <R.h> #include <Rinternals.h> SEXP add_fun( SEXP a_, SEXP b_ ){ int a = INTEGER(a_)[0], b = INTEGER(b_)[0] ; int res = add( a, b ) ; SEXP result = PROTECT(allocVector(INTSXP, 1) ) ; INTEGER(result)[0] = res ; UNPROTECT(1) ; return result ; }
- 10. $ R CMD SHLIB add.c clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG - I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c add.c -o add.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/ Frameworks/R.framework/Resources/lib -L/usr/local/lib -o add.so add.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework - Wl,CoreFoundation > dyn.load( "add.so" ) > add <- function(a, b){ + .Call( "add_c", a, b ) + } > add( 33L, 9L ) [1] 42 > > add( 33, 9 ) Error in add(33, 9) : INTEGER() can only be applied to a 'integer', not a 'double'
- 11. Rcpp
- 12. #include <Rcpp.h> // [[Rcpp::export]] int add( int a, int b ){ return a + b ; } > sourceCpp( "add.cpp" ) > add( 17L, 25L ) [1] 42 > add( 17, 25 ) [1] 42
- 13. #include <Rcpp.h> using namespace Rcpp // [[Rcpp::export]] double sum_cpp( NumericVector x){ int n = x.size() ; double res = 0.0 ; for( int i=0; i<n; i++){ res += x[i] ; } return res ; }
- 14. sugar
- 15. pdistR <- function(x, ys) { sqrt((x - ys) ^ 2) }
- 16. sugar NumericVector pdistCpp2( double x, NumericVector ys){ return sqrt( pow( x - ys, 2 ) ) ; } NumericVector pdistCpp( double x, NumericVector ys) { int n = ys.size() ; NumericVector res(n) ; for(int i=0; i<n; i++){ res[i] = sqrt( pow( x-ys[i], 2.0 ) ; } return res ; }
- 17. modules
- 18. class Kittens { public: Kittens( int n_ ) : n(n_) ; void meow() { ... }; void purr() { ... }; int n ; } ; RCPP_MODULE(Cats){ class_<Kittens>( "Kittens" ) .constructor<int>() .field( "n", &Kittens::n ) .method( "meow", &Kittens::meow ) .method( "purr", &Kittens::purr ) ; } kittens <- new( Kittens, 10 ) kittens$n kittens$meow() kittens$purr()
- 20. Rcpp n + 2 core sugar modules core modules mypkg developper Rcpp n +1 core sugar modules core modules Rcpp n core sugar modules core modules cran mypkg
- 21. Rcpp n + 2 core sugar modules core modules mypkg developper Rcpp n +1 core sugar modules core modules Rcpp n core sugar modules core modules cran user1 mypkg 🔥
- 22. Rcpp n + 2 core sugar modules core modules mypkg developper Rcpp n +1 core sugar modules core modules Rcpp n core sugar modules core modules cran user1 user2 mypkg 🔥 ✔
- 23. Rcpp n + 2 core sugar modules core modules mypkg developper Rcpp n +1 core sugar modules core modules Rcpp n core sugar modules core modules cran user1 user2 mypkg user3 🔥 ✔ 🔥
- 24. proposal
- 26. • C++ = C++11 • header only / no runtime dependency • lightweight & modular Rcpp11
- 30. why C++11
- 31. uniform initialization NumericVector x = { 1.0, 2.3, 3.3 } ;
- 32. for double sum( NumericVector x ){ double res = 0.0 ; for( double d: x) res += d ; return res ; }
- 33. lambdas NumericVector pdist( double x, NumericVector ys ){ return sapply( ys, [&x]( double y ){ return sqrt( pow(x-y, 2.0) ) ; }) ; }
- 34. auto NumericVector pdist( double x, NumericVector ys ){ auto fun = [&x]( double y ){ return sqrt( pow(x-y, 2.0) ) ; } ; return sapply( ys, fun) ; }