GBIF ideas

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Roderic Page

Slides from an informal talk about possible topics for GBIF

Tecnologia

http://iphylo.blogspot.dk/2013/10/what-can-global-biodiversity.html

Coverage
• How representative is data? How to show this?
• Adding other sources of data (e.g., literature)
• Adding data is cumbersome (can’t do it directly)

Mormopterus petrophilus and Sauromys petrophilus

Quality
• Errors and duplicates
• Need measure of reliability
• Ability to flag and fix (make editable)
• [need stable occurrence ids]

Annotations
• Need stable occurrence ids
• Annotate, edit, fix data (github?)
• DOIs for data (and data versions)
• DOIs link to ORCID, automatic credit

LSIDs
RDF

Triple store
Or Semantic Wiki

Names
• Use nomenclators as source of names
• Checklists/classifications map nodes to names
• Create central list of names (triple store/wiki)

New data
• Treat GenBank as another DWCA source
• Phylogeny and phylogeography
• Visualising phylogenetic/genomic diversity

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GBIF ideas

1. http://iphylo.blogspot.dk/2013/10/what-can-global-biodiversity.html

2. Coverage

4. BioStor

5. Coverage • How representative is data? How to show this? • Adding other sources of data (e.g., literature) • Adding data is cumbersome (can’t do it directly)

6. Quality

8. Mormopterus petrophilus and Sauromys petrophilus

9. Quality • Errors and duplicates • Need measure of reliability • Ability to flag and fix (make editable) • [need stable occurrence ids]

10. Annotation/correction

11.

12.

13.

14. Annotations • Need stable occurrence ids • Annotate, edit, fix data (github?) • DOIs for data (and data versions) • DOIs link to ORCID, automatic credit

15. Names

16.

17. LSIDs RDF Triple store Or Semantic Wiki

18. Names • Use nomenclators as source of names • Checklists/classifications map nodes to names • Create central list of names (triple store/wiki)

19. New data

20. Coverage

21.

22. Coverage

23. New data • Treat GenBank as another DWCA source • Phylogeny and phylogeography • Visualising phylogenetic/genomic diversity