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Where Have We Been & Where
Are We Going?
Philip E. Bourne, Ph.D.
Associate Director for Data Science
philip.bourne@nih.gov
Its 4 years since many of us stood
before the bear.. What has been
accomplished?
http://saltypeppergames.com/why-your-feedback-matters/
https://sites.google.com/site/beyondthepdf/
I decided to crowd source an
albeit biased answer to that
question
Major Contributors (In Order):
Policy
• Funder mandates
• Journals requiring data accessibility
• Joint declaration of data sharing principles
• Gates foundation
• Peer review
– Open
– Post publication
– Independent e.g., axios
Major Contributors (In Order):
Software
• GitHub
• R
• Dropbox
• Google Docs
• Impact Story
• eNotebooks
• MathJax
Major Contributors (In Order):
Methodology
• Crowdfunding
• Prepublication servers
• Open worm – crowd funding – 60
developers
• Software carpentry
Major Contributors (In Order):
Standards
• Orcid
Major Contributors (In Order):
Resources
• Figshare
• Wikidata
• Dryad
• Twitter
• Blogs
Major Contributors (In Order):
Other
• Altmetrics
• Social reference management
• Growing awareness of research expertise
eg Vivo
• Data science as a profession
• Resource Identification Initiative
• Ioannidis work
• Mega journals
Perhaps More of an Unbiased
View?
My Personal View
• Pluses
– The strength and
breadth of the FORCE
community
– The emergence of
other related
communities
– Funder mandates
– The worldwide focus
on data {sharing}
• Minuses
– That not more has
been done with the OA
corpus
– OA impact has been
minimal
– Top down and bottom
up have yet to be truly
synergistic
– The global community
is not united (HIROs)
The Way Forward is 3-Fold
Community
Policy
Infrastructure
• Sustainability
• Collaboration
• Training
A point of note:
Both EBI in the EU and NLM in the
US will soon assume new
leadership
This is a major opportunity
Community Policy
Infrastructure
The library has a tradition of supporting
community, being an infrastructure to
maintain knowledge and in the case of NLM a
place to set policy
What should the library / data
center of the future look like and
can that view inform our future
objectives?
The library (or whatever it is
called) should curate, catalog,
preserve, and disseminate the
complete digital research lifecycle
You can also imagine this model
extending to physical artifacts
“Publishing” should involve
review (or not) and subsequent
change in the access control of all
or parts of that research lifecycle
Individual Research Objects
within a lifecycle should be
referenced and described
Temporal order should be
maintained
Languages will describe,
compare, relate and analyze such
lifecycles
Collections (Formally Databases)
Particular collections of curated
research objects that can be
reviewed within the research
lifecycle and as part of a
collective analysis
Collections are persistent or
dynamic
This is a different model than we have
today but there are signs and also
resistance
• Signs
– Institutional
repositories run by
libraries
– Academic presses (?)
– Preservation of
workflows
– Portals
• Resistance
– Publishers punting on
data and software
– Reward structure
ingrained
– Few funding
opportunities
It Will Be Interesting to See What
Evolves
Thank You!

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Where Have We Been & Where Are We Going?

  • 1. Where Have We Been & Where Are We Going? Philip E. Bourne, Ph.D. Associate Director for Data Science philip.bourne@nih.gov
  • 2. Its 4 years since many of us stood before the bear.. What has been accomplished? http://saltypeppergames.com/why-your-feedback-matters/ https://sites.google.com/site/beyondthepdf/
  • 3. I decided to crowd source an albeit biased answer to that question
  • 4.
  • 5.
  • 6. Major Contributors (In Order): Policy • Funder mandates • Journals requiring data accessibility • Joint declaration of data sharing principles • Gates foundation • Peer review – Open – Post publication – Independent e.g., axios
  • 7. Major Contributors (In Order): Software • GitHub • R • Dropbox • Google Docs • Impact Story • eNotebooks • MathJax
  • 8. Major Contributors (In Order): Methodology • Crowdfunding • Prepublication servers • Open worm – crowd funding – 60 developers • Software carpentry
  • 9. Major Contributors (In Order): Standards • Orcid
  • 10. Major Contributors (In Order): Resources • Figshare • Wikidata • Dryad • Twitter • Blogs
  • 11. Major Contributors (In Order): Other • Altmetrics • Social reference management • Growing awareness of research expertise eg Vivo • Data science as a profession • Resource Identification Initiative • Ioannidis work • Mega journals
  • 12. Perhaps More of an Unbiased View?
  • 13. My Personal View • Pluses – The strength and breadth of the FORCE community – The emergence of other related communities – Funder mandates – The worldwide focus on data {sharing} • Minuses – That not more has been done with the OA corpus – OA impact has been minimal – Top down and bottom up have yet to be truly synergistic – The global community is not united (HIROs)
  • 14. The Way Forward is 3-Fold Community Policy Infrastructure • Sustainability • Collaboration • Training
  • 15. A point of note: Both EBI in the EU and NLM in the US will soon assume new leadership This is a major opportunity
  • 16. Community Policy Infrastructure The library has a tradition of supporting community, being an infrastructure to maintain knowledge and in the case of NLM a place to set policy
  • 17. What should the library / data center of the future look like and can that view inform our future objectives?
  • 18. The library (or whatever it is called) should curate, catalog, preserve, and disseminate the complete digital research lifecycle You can also imagine this model extending to physical artifacts
  • 19. “Publishing” should involve review (or not) and subsequent change in the access control of all or parts of that research lifecycle
  • 20. Individual Research Objects within a lifecycle should be referenced and described Temporal order should be maintained Languages will describe, compare, relate and analyze such lifecycles
  • 21. Collections (Formally Databases) Particular collections of curated research objects that can be reviewed within the research lifecycle and as part of a collective analysis Collections are persistent or dynamic
  • 22. This is a different model than we have today but there are signs and also resistance • Signs – Institutional repositories run by libraries – Academic presses (?) – Preservation of workflows – Portals • Resistance – Publishers punting on data and software – Reward structure ingrained – Few funding opportunities
  • 23. It Will Be Interesting to See What Evolves Thank You!