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iQconCAT: quantitative proteomics from instrument to browser

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Neil Swainston
Neil Swainston

QConCAT is a method for multiplexed absolute quantification in proteomics using concatenated signature peptides encoded by QConCAT genes. There are three main steps in the QConCAT informatics workflow: 1) selection of unique QConCAT peptides for the target proteins, 2) analysis and submission of mass spectrometry data to identify the QConCAT peptides and generate concentration ratios, and 3) browsing and querying the quantitative proteomics data stored in a searchable repository.

Tecnologia
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QConCAT: quantitative proteomics from instrument to browser ,[object Object],[object Object],[object Object]
QconCAT… Multiplexed absolute quantification for proteomics using concatenated signature peptides encoded by QconCAT genes. Pratt JM, et al. Nature Protocols 1, 1029-1043 (2006)
… from instrument to browser ,[object Object],[object Object],[object Object],[object Object]
Selection of QconCAT peptides ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
PepSelecta ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
 
 
 
PRIDE Converter ,[object Object],[object Object]
QconCAT PrideWizard ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
 
QconCAT PrideWizard ,[object Object],[object Object]
MCISB Proteome Database ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
MCISB Proteome Database ,[object Object]
Future work ,[object Object],[object Object],[object Object]
QConCAT: quantitative proteomics from instrument to browser ,[object Object],[object Object],[object Object]

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iQconCAT: quantitative proteomics from instrument to browser

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