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Introduction. History of Protein Sequencing. Determining Amino Acid Composition. N-terminal amino acid analysis. C-terminal amino acid analysis The Edman degradation reaction. Limitations of the Edman degradation. Mass spectrometry Importance Conclusion Reference
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Introduction What is Protein Sequencing? History Determination of amino acid composition Sequencing methods N terminal sequencing C terminal sequencing Mass spectrometer Application Reference
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A comprehensive presentation on Determination of structure of proteins for MBBS, BDS, B Pharm & Biotechnology students to facilitate self- study.
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When you digest a sample of your protein with Chymotrypsin you get a different set of fragments: MNY LMRNF CDEKICY LVSKMQL IGRASTF HPPRGATW a) How does the Edman Degradation method work? b) What is the correct sequence of your protein? c) What are alternate ways you could have determined the sequence of your protein? Solution Edman degradation is a chemical method used for the sequencing of amino acids in a peptide. This method is developed by Pehr Edman in 1960. In this method, N-terminal is labeled or cleaved form the peptide and number of residues are identified The Edman degradation is a very important reaction for protein sequencing, because it allows the ordered amino acid composition of a protein to be discovered. Automated Edman sequencers are now in widespread use, and are able to sequence peptides up to approximately 50 amino acids long. A reaction scheme for sequencing a protein by the Edman degradation follows: 1.Break anydisulfide bridgesin the protein with areducing agentlike2-mercaptoethanol. Aprotecting groupsuch asiodoacetic acidmay be necessary to prevent the bonds from re-forming. 2.Separate and purify the individual chains of the protein complex, if there are more than one. 3.Determine the amino acid composition of each chain. 4.Determine the terminal amino acids of each chain. 5.Break each chain into fragments under 50 amino acids long. 6.Separate and purify the fragments. 7.Determine the sequence of each fragment. 8.Repeat with a different pattern of cleavage. 9.Construct the sequence of the overall protein. Step – 1: The phenyl isothiocyanate reagent attacks and removes the N-terminal amino acid unit in the form of a substituted thiohydantoin heterocycle. Characteristic hydantoin derivatives of all the amino acids have been made and catalogued, so identification of the terminal unit is accomplished easily by comparison. Step – 2: The terminal amino group adds to the reactive isothiocyanate function to give a substituted thiourea. This moiety is conformationally mobile, and the sulfur atom may approach the carboxyl carbonyl of the N-terminal amino acid. Step – 3: Anhydrous HCl protonates the amide oxygen atom, activating it to nucleophilic attack by sulfur. Next, a thiazolinone heterocycle incorporating the N-terminal unit is cleaved, leaving behind a shorter peptide chain. This heterocyclic ring is unstable and undergoes acid-catalyzed rearrangement to the isomeric thiohydantoin (in the green shaded box). Digestion into peptide fragments Peptides longer than about 50-70 amino acids long cannot be sequenced reliably by the Edman degradation. Because of this, long protein chains need to be broken up into small fragments that can then be sequenced individually. Digestion is done either by endopeptidases such as trypsin or pepsin or by chemical reagents such as cyanogen bromide. Different enzymes give different cleavage patterns, and the overlap between fragments can be used to construct an overall sequence. Reaction The pe.
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Protein Sequencing Introduction Protein Sequencing History of Protein Sequencing Determining Amino Acid Composition N-terminal amino acid analysis C-terminal amino acid analysis Edman degradation The Edman degradation reaction Limitations of the Edman degradation Mass spectrometry Nucleic Acid Sequencing Introduction Nucleic Acid Sequencing Type of Nucleic Acid Sequencing DNA Sequencing Method of DNA Sequencing Application of DNA Sequencing DNA Sequencing Institutes Conclusion Reference
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Proteins play crucial roles in nearly all biological processes. These many functions of proteins are a result of the folding of proteins into many distinct 3D structures. Protein analysis tries to explore how amino acid sequences specify the structure of proteins and how these proteins bind to substrates and other molecules to perform their functions. Protein analysis allows us to understand the function of the protein based on its structure.
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Finding Java's Hidden Performance Traps @ DevoxxUK 2024
Victor Rentea
Three things you will take away from the session: • How to run an effective tenant-to-tenant migration • Best practices for before, during, and after migration • Tips for using migration as a springboard to prepare for Copilot in Microsoft 365 Main ideas: Migration Overview: The presentation covers the current reality of cross-tenant migrations, the triggers, phases, best practices, and benefits of a successful tenant migration Considerations: When considering a migration, it is important to consider the migration scope, performance, customization, flexibility, user-friendly interface, automation, monitoring, support, training, scalability, data integrity, data security, cost, and licensing structure Next Wave: The next wave of change includes the launch of Copilot, which requires businesses to be prepared for upcoming changes related to Copilot and the cloud, and to consolidate data and tighten governance ShareGate: ShareGate can help with pre-migration analysis, configurable migration tool, and automated, end-user driven collaborative governance
Strategize a Smooth Tenant-to-tenant Migration and Copilot Takeoff
Strategize a Smooth Tenant-to-tenant Migration and Copilot Takeoff
sammart93
💥 You’re lucky! We’ve found two different (lead) developers that are willing to share their valuable lessons learned about using UiPath Document Understanding! Based on recent implementations in appealing use cases at Partou and SPIE. Don’t expect fancy videos or slide decks, but real and practical experiences that will help you with your own implementations. 📕 Topics that will be addressed: • Training the ML-model by humans: do or don't? • Rule-based versus AI extractors • Tips for finding use cases • How to start 👨🏫👨💻 Speakers: o Dion Morskieft, RPA Product Owner @Partou o Jack Klein-Schiphorst, Automation Developer @Tacstone Technology
DEV meet-up UiPath Document Understanding May 7 2024 Amsterdam
DEV meet-up UiPath Document Understanding May 7 2024 Amsterdam
UiPathCommunity
Retrieval augmented generation (RAG) is the most popular style of large language model application to emerge from 2023. The most basic style of RAG works by vectorizing your data and injecting it into a vector database like Milvus for retrieval to augment the text output generated by an LLM. This is just the beginning. One of the ways that we can extend RAG, and extend AI, is through multilingual use cases. Typical RAG is done in English using embedding models that are trained in English. In this talk, we’ll explore how RAG could work in languages other than English. We’ll explore French, Chinese, and Polish.
Introduction to Multilingual Retrieval Augmented Generation (RAG)
Introduction to Multilingual Retrieval Augmented Generation (RAG)
Zilliz
MS Copilot expands with MS Graph connectors
MS Copilot expands with MS Graph connectors
MS Copilot expands with MS Graph connectors
Nanddeep Nachan
Passkeys: Developing APIs to enable passwordless authentication Cody Salas, Sr Developer Advocate | Solutions Architect - Yubico Apidays New York 2024: The API Economy in the AI Era (April 30 & May 1, 2024) ------ Check out our conferences at https://www.apidays.global/ Do you want to sponsor or talk at one of our conferences? https://apidays.typeform.com/to/ILJeAaV8 Learn more on APIscene, the global media made by the community for the community: https://www.apiscene.io Explore the API ecosystem with the API Landscape: https://apilandscape.apiscene.io/
Apidays New York 2024 - Passkeys: Developing APIs to enable passwordless auth...
Apidays New York 2024 - Passkeys: Developing APIs to enable passwordless auth...
apidays
Repurposing LNG terminals for Hydrogen Ammonia: Feasibility and Cost Saving. A report by Poten & Partners as part of the Hydrogen Asia 2024 Summit in Singapore. Copyright Poten & Partners 2024.
Repurposing LNG terminals for Hydrogen Ammonia: Feasibility and Cost Saving
Repurposing LNG terminals for Hydrogen Ammonia: Feasibility and Cost Saving
Edi Saputra
writing some innovation for development and search
Boost Fertility New Invention Ups Success Rates.pdf
Boost Fertility New Invention Ups Success Rates.pdf
sudhanshuwaghmare1
In this presentation, we delve into leveraging Amazon Q to elevate developer efficiency and craft GenAI applications. Discover the key features and benefits of Amazon Q for streamlined application development. Learn how Amazon Q can revolutionize your development processes and empower you to create cutting-edge GenAI applications.
Elevate Developer Efficiency & build GenAI Application with Amazon Q
Elevate Developer Efficiency & build GenAI Application with Amazon Q
Bhuvaneswari Subramani
Último
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MINDCTI Revenue Release Quarter One 2024
MINDCTI Revenue Release Quarter One 2024
+971581248768>> SAFE AND ORIGINAL ABORTION PILLS FOR SALE IN DUBAI AND ABUDHA...
+971581248768>> SAFE AND ORIGINAL ABORTION PILLS FOR SALE IN DUBAI AND ABUDHA...
Strategies for Landing an Oracle DBA Job as a Fresher
Strategies for Landing an Oracle DBA Job as a Fresher
AWS Community Day CPH - Three problems of Terraform
AWS Community Day CPH - Three problems of Terraform
Exploring Multimodal Embeddings with Milvus
Exploring Multimodal Embeddings with Milvus
WSO2's API Vision: Unifying Control, Empowering Developers
WSO2's API Vision: Unifying Control, Empowering Developers
Connector Corner: Accelerate revenue generation using UiPath API-centric busi...
Connector Corner: Accelerate revenue generation using UiPath API-centric busi...
Six Myths about Ontologies: The Basics of Formal Ontology
Six Myths about Ontologies: The Basics of Formal Ontology
TrustArc Webinar - Unlock the Power of AI-Driven Data Discovery
TrustArc Webinar - Unlock the Power of AI-Driven Data Discovery
Vector Search -An Introduction in Oracle Database 23ai.pptx
Vector Search -An Introduction in Oracle Database 23ai.pptx
Apidays New York 2024 - APIs in 2030: The Risk of Technological Sleepwalk by ...
Apidays New York 2024 - APIs in 2030: The Risk of Technological Sleepwalk by ...
Finding Java's Hidden Performance Traps @ DevoxxUK 2024
Finding Java's Hidden Performance Traps @ DevoxxUK 2024
Strategize a Smooth Tenant-to-tenant Migration and Copilot Takeoff
Strategize a Smooth Tenant-to-tenant Migration and Copilot Takeoff
DEV meet-up UiPath Document Understanding May 7 2024 Amsterdam
DEV meet-up UiPath Document Understanding May 7 2024 Amsterdam
Introduction to Multilingual Retrieval Augmented Generation (RAG)
Introduction to Multilingual Retrieval Augmented Generation (RAG)
MS Copilot expands with MS Graph connectors
MS Copilot expands with MS Graph connectors
Apidays New York 2024 - Passkeys: Developing APIs to enable passwordless auth...
Apidays New York 2024 - Passkeys: Developing APIs to enable passwordless auth...
Repurposing LNG terminals for Hydrogen Ammonia: Feasibility and Cost Saving
Repurposing LNG terminals for Hydrogen Ammonia: Feasibility and Cost Saving
Boost Fertility New Invention Ups Success Rates.pdf
Boost Fertility New Invention Ups Success Rates.pdf
Elevate Developer Efficiency & build GenAI Application with Amazon Q
Elevate Developer Efficiency & build GenAI Application with Amazon Q
05. Protein Sequencing
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