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Interdisciplinary Science


Physics
Material Science   Nanotechnology
                    Nanotechnology   Biochemistry
Engineering
DNA Nanotechnology


 DNA nanotechnology is a
design and manufacture of
   artificial nucleic acid
structure for technological
            uses


          DNA Structure
•Strict Base pairing rules of nucleic acids




A       T                    C          G

Adenine                    Cytosine
Thymine                    Guanine
Only portion of strands with
complimentary base sequences bind
together to form strong rigid double
helix
Nadrian Seeman

         You have to follow
         your nose and If you
         think what you are
         doing is interesting
         and exciting you
         have to have
         courage to do it
Nanostructure fabrication and confirmation process.
The designed oligonucleotides were
A) Hybridized,
B) Ligated,
C) Separated by agarose gel electrophoresis,
D) Extracted and purified from a gel slice,
E) Immobilized on a mica surface
F) Subjected to AFM visualization.
Fig. 1. Structural design of (a) Y-shaped, (b)
closed Y-shaped, (c) H-shaped, and (d)
hexagonal     nanostructures.    Each   arrow
indicates an oligonucleotide of 54 mer in
length.
(A) DNA structure of a
covalently closed cube-
like molecular complex.
This is the first
construction of a closed
polyhedral object from
DNA

(B) Truncated
octahedron
Applications
  A principal goal of DNA
  nanotechnology is the assembly of
  novel biomaterials for
 Analytical
 Industrial
 Therapeutic purposes
Crystallography

Molecules that are difficult to
crystallize in isolation could be
arranged within a three-dimensional
nucleic acid lattice, allowing
determination of their structure
Computing
This approach has been used to make
logic gates such as AND, OR, and
NOT gates. More recently, a four-bit
circuit as demonstrated that can
compute the square root of the
integers 0–15, using a system of
gates containing 130 DNA strands.
Molecular electronics

The assembly of a nucleic acid structure
could be used to template the assembly
of a molecular electronic elements such
as molecular wires
Nanomedicine
Hollow DNA box containing proteins that
induce apoptosis, or cell death, that will only
open when in proximity to a cancer cell.
This 3-D print shows the
structure of a functional
synthetic membrane channel
constructed through DNA
nanotechnology.
This DNA-based membrane
channel consists of a needle-
like stem 42 nanometers
long with an internal
diameter of just two
nanometers,. (Credit: Dietz
Lab, TU Muenchen;
copyright TU Muenchen)
Future of DNA Nanotechnology
 Seeman NC. In the nick of space: Generalized nucleic
  acid complementarily and the development of DNA
  nanotechnology. Synlett. 2000; 1536–1548.
 Fu T-J, Seeman NC. DNA double cross-over
  structures. Biochem. 1993; 32 :3211–3220
 Weiss. A Conversation with Prof. Ned Seeman:

   Founder of DNA Nanotechnology. 2008; ACS
  Nano.vol. 2 no. 6.1089-1096




                                                         19

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Copy of biohemistr

  • 1. Interdisciplinary Science Physics Material Science Nanotechnology Nanotechnology Biochemistry Engineering
  • 2.
  • 3. DNA Nanotechnology DNA nanotechnology is a design and manufacture of artificial nucleic acid structure for technological uses DNA Structure
  • 4. •Strict Base pairing rules of nucleic acids A T C G Adenine Cytosine Thymine Guanine
  • 5. Only portion of strands with complimentary base sequences bind together to form strong rigid double helix
  • 6. Nadrian Seeman You have to follow your nose and If you think what you are doing is interesting and exciting you have to have courage to do it
  • 7. Nanostructure fabrication and confirmation process. The designed oligonucleotides were A) Hybridized, B) Ligated, C) Separated by agarose gel electrophoresis, D) Extracted and purified from a gel slice, E) Immobilized on a mica surface F) Subjected to AFM visualization.
  • 8. Fig. 1. Structural design of (a) Y-shaped, (b) closed Y-shaped, (c) H-shaped, and (d) hexagonal nanostructures. Each arrow indicates an oligonucleotide of 54 mer in length.
  • 9. (A) DNA structure of a covalently closed cube- like molecular complex. This is the first construction of a closed polyhedral object from DNA (B) Truncated octahedron
  • 10. Applications A principal goal of DNA nanotechnology is the assembly of novel biomaterials for  Analytical  Industrial  Therapeutic purposes
  • 11. Crystallography Molecules that are difficult to crystallize in isolation could be arranged within a three-dimensional nucleic acid lattice, allowing determination of their structure
  • 12. Computing This approach has been used to make logic gates such as AND, OR, and NOT gates. More recently, a four-bit circuit as demonstrated that can compute the square root of the integers 0–15, using a system of gates containing 130 DNA strands.
  • 13. Molecular electronics The assembly of a nucleic acid structure could be used to template the assembly of a molecular electronic elements such as molecular wires
  • 14. Nanomedicine Hollow DNA box containing proteins that induce apoptosis, or cell death, that will only open when in proximity to a cancer cell.
  • 15. This 3-D print shows the structure of a functional synthetic membrane channel constructed through DNA nanotechnology. This DNA-based membrane channel consists of a needle- like stem 42 nanometers long with an internal diameter of just two nanometers,. (Credit: Dietz Lab, TU Muenchen; copyright TU Muenchen)
  • 16.
  • 17.
  • 18. Future of DNA Nanotechnology
  • 19.  Seeman NC. In the nick of space: Generalized nucleic acid complementarily and the development of DNA nanotechnology. Synlett. 2000; 1536–1548.  Fu T-J, Seeman NC. DNA double cross-over structures. Biochem. 1993; 32 :3211–3220  Weiss. A Conversation with Prof. Ned Seeman: Founder of DNA Nanotechnology. 2008; ACS Nano.vol. 2 no. 6.1089-1096 19