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Artificial Intelligence
Applications in
Radiology
Harrison Bai
5/6/21
Lab website
https://sites.brown.edu/airadiology/people/
Active areas of work
1. COVID-19
2. Treatment response assessment on imaging (brain, TACE, lung, colorectal)
4. Tumor characterization on imaging
3. Rapid diagnosis of large-vessel ischemic stroke, patient selection and outcome
prediction
5. Infrastructure development
6. Federated learning
7. Image registration (CT-guided tumor ablation)
8. Radiology reports natural language processing
Receiver operating characteristic (ROC) curve for model
performance on Brown-April test set. RT-PCR results were
used as the ground truth label. Seven radiologists were asked to
identify whether each CXR manifested indications of COVID-19.
Their sensitivity and specificity scores are compared to those of
the AI model.
ROC curve for model performance on the External and Xiangya-
February test sets. RT-PCR results were used as the ground truth
label. As several CXR images were associated with each patient, the
mean predictive output was used to determine if the patient is COVID-
19 positive.
Gradient-weighted class activation mapping images of COVID-19 patients from each test set. All images were predicted
correctly as COVID-19 positive. (a) Image and (d) associated map from Brown-April cohort. (b) Image and (e) associated map from
External cohort. (c) Image and (f) associated map from Xiangya-Feburary cohort.
Technique for dealing with missing sequence
and imaging artifact: Sequence dropout
Technique for dealing with missing sequence
and imaging artifact: Sequence dropout
The segmentation for different subregions (WT, TC, ET) using the conventional UNet3D (top) and contrast-dropout UNet3D (bottom).
The contrast-dropout method significantly improved the robustness against missing inputs in deployment and can be used to analyze
the impact of each input contrast.
Human-in-the-loop AI
 In the short- to mid-term, the utilization of AI needs to be combined with
human intervention and supervision
 Active learning strategy – annotation
 Treatment response evaluation on imaging
 Automatic quality estimation to flag the failed cases for humans to review
and/or edit
Human in the loop annotation
Automatic quality estimation
Correlations between the estimated uncertainty from mean foreground probably and mean probably variation and the Dice scores. The mean probability
metric showed higher correlations.
Automatic quality estimation
other class
necrotic/non-enhancing
tumor core
peritumoral edema
enhancing tumor
0
20
40
60
80
100
normalized uncertainty
T2 UNet3D segmentation
whole tumor uncertainty tumor core uncertainty enhancing tumor uncertainty
Uncertainty map estimated using the mean probably within a ROI.
Treatment response evaluation
DIANA
siim.org | #SIIM20 |
@SIIM_Tweets
17
PACS
DIANA Analysis and
Control Scripts
Imaging
Systems
Workstation/Device
Dose Monitor
Traditional Workflow
HTTP
Image/Report
Transfer
Protocols/Tools
2
*End of PHI
User Access
1
4
3 5
Communication Modality
ICH Prediction
Epidural Hemorrhage
High Probability (99%)
BA Prediction
7 years and 5.34
months
External Database
Evaluation of DIANA AI
Pipelines
 Integrated with RIH
PACS
 Configured to
monitor live PACS
for 2 months
o Bone age
o Intracranial
hemorrhage
 Ground truth
o mPower
o Radiology reports
Federated learning
 Domain shift – distribution difference between source data and target data
leading to performance degradation
 Annotations vary across imaging sites
 Share weights without sharing data
 AWS NVIDIA Clara Train SDK using TensorFlow 1.14
 Semi-supervised and unsupervised learning
 Data access limited by strict sharing policies
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Professor Harrison Bai, Artificial Intelligence Applications in Radiology_mHealth Israel

  • 3. Active areas of work 1. COVID-19 2. Treatment response assessment on imaging (brain, TACE, lung, colorectal) 4. Tumor characterization on imaging 3. Rapid diagnosis of large-vessel ischemic stroke, patient selection and outcome prediction 5. Infrastructure development 6. Federated learning 7. Image registration (CT-guided tumor ablation) 8. Radiology reports natural language processing
  • 4.
  • 5.
  • 6.
  • 7. Receiver operating characteristic (ROC) curve for model performance on Brown-April test set. RT-PCR results were used as the ground truth label. Seven radiologists were asked to identify whether each CXR manifested indications of COVID-19. Their sensitivity and specificity scores are compared to those of the AI model. ROC curve for model performance on the External and Xiangya- February test sets. RT-PCR results were used as the ground truth label. As several CXR images were associated with each patient, the mean predictive output was used to determine if the patient is COVID- 19 positive.
  • 8. Gradient-weighted class activation mapping images of COVID-19 patients from each test set. All images were predicted correctly as COVID-19 positive. (a) Image and (d) associated map from Brown-April cohort. (b) Image and (e) associated map from External cohort. (c) Image and (f) associated map from Xiangya-Feburary cohort.
  • 9.
  • 10. Technique for dealing with missing sequence and imaging artifact: Sequence dropout
  • 11. Technique for dealing with missing sequence and imaging artifact: Sequence dropout The segmentation for different subregions (WT, TC, ET) using the conventional UNet3D (top) and contrast-dropout UNet3D (bottom). The contrast-dropout method significantly improved the robustness against missing inputs in deployment and can be used to analyze the impact of each input contrast.
  • 12. Human-in-the-loop AI  In the short- to mid-term, the utilization of AI needs to be combined with human intervention and supervision  Active learning strategy – annotation  Treatment response evaluation on imaging  Automatic quality estimation to flag the failed cases for humans to review and/or edit
  • 13. Human in the loop annotation
  • 14. Automatic quality estimation Correlations between the estimated uncertainty from mean foreground probably and mean probably variation and the Dice scores. The mean probability metric showed higher correlations.
  • 15. Automatic quality estimation other class necrotic/non-enhancing tumor core peritumoral edema enhancing tumor 0 20 40 60 80 100 normalized uncertainty T2 UNet3D segmentation whole tumor uncertainty tumor core uncertainty enhancing tumor uncertainty Uncertainty map estimated using the mean probably within a ROI.
  • 17. DIANA siim.org | #SIIM20 | @SIIM_Tweets 17 PACS DIANA Analysis and Control Scripts Imaging Systems Workstation/Device Dose Monitor Traditional Workflow HTTP Image/Report Transfer Protocols/Tools 2 *End of PHI User Access 1 4 3 5 Communication Modality ICH Prediction Epidural Hemorrhage High Probability (99%) BA Prediction 7 years and 5.34 months External Database Evaluation of DIANA AI Pipelines  Integrated with RIH PACS  Configured to monitor live PACS for 2 months o Bone age o Intracranial hemorrhage  Ground truth o mPower o Radiology reports
  • 18. Federated learning  Domain shift – distribution difference between source data and target data leading to performance degradation  Annotations vary across imaging sites  Share weights without sharing data  AWS NVIDIA Clara Train SDK using TensorFlow 1.14  Semi-supervised and unsupervised learning  Data access limited by strict sharing policies