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Data Loading and Visualization-3735
1.
Slicer Training 1
Loading and Viewing Data Sonia Pujol, Ph.D. Randy Gollub, M.D., Ph.D.
2.
3.
4.
Welcome to 3D
Slicer
5.
Goal of the
tutorial Guiding you step by step through the process of Loading and Viewing Data within Slicer
6.
7.
Goal of the
tutorial Final result of the series of exercises
8.
9.
Slicer Interface Tk
window Viewer Menu
10.
Slicer Menu Select
the Volumes Module
11.
Panels and Tabs
The Panel of the Volumes Module appears
12.
Slicer Menu Panels
Sliders Buttons Control Window
13.
14.
15.
Slicer Modules The
architecture of Slicer is modular Select Modules in the SubMenu
16.
Slicer Modules The
list of Slicer Modules categories appears Settings IO Application Filtering Segmentation Registration Measurement Visualization Examples Unfiled Alpha
17.
18.
19.
20.
21.
22.
23.
Loading Data Slicer
Advantage Putting together Images and Surface
24.
25.
26.
Loading DICOM Volumes
Click on Add Volume in the Slicer Menu
27.
Loading DICOM Volumes
Left-click on the Menu Properties and change Basic to DICOM The Panel Props appears by default.
28.
Loading DICOM Volumes
Click on Select DICOM Volume The DICOM panel appears
29.
Loading DICOM Volumes
Select the directory dicom in the Tutorial-with-dicom dataset
30.
Loading DICOM Volumes
The list of DICOM studies appears. Click OK
31.
32.
33.
34.
35.
Visualization Support The
value of the gray level of the pixel under the cursor appears in the corresponding slice
36.
37.
Viewing Volumes The
Axial, Sagittal and Coronal Images appear in the Viewer
38.
39.
40.
41.
Viewing Volumes Select
the 3D View The View Menu contains different options to visualize the data
42.
Viewing Volumes 3D
View focuses on 3D
43.
Viewing Volumes Select
4x512 The View Menu contains different options to visualize the data
44.
Viewing Volumes 4x512
view: larger image views to see details
45.
Viewing Volumes Select
1x512 The View Menu contains different options to visualize the data
46.
47.
48.
Viewing Volumes 4x256
view: smaller equal-sized images Come back to Normal View
49.
50.
51.
52.
53.
Volumes without Header
1. Main Data 2. Add Volume 3. Browse to find the first image of the Volume spgr in the directory tutorial 4. Select first image I.001 of volume to load, and click Open 5. Click on Manual 6. Click on Apply
54.
55.
56.
57.
Volumes without Header
The spgr volume appears in the Viewer
58.
59.
60.
61.
Loading Models The
model of the vessels appears in the Viewer.
62.
63.
64.
Loading a Scene
The viewer displays the tutorial Scene
65.
Loading a Scene
The elements of the Scene are listed in the Menu Window
66.
67.
68.
Manipulating a Model
Put the mouse on the 3D Slicer icon
69.
Manipulating a Model
The Control Window appears
70.
Manipulating a Model
Position the mouse on the R letter (Right) inside the window
71.
Manipulating a Model
The View Panel shows the model from the right side of the patient
72.
Manipulating a Model
Click on the Spin button
73.
Manipulating a Model
The model starts spinning inside the Viewer Panel.
74.
Manipulating a Model
Click on the Rock button
75.
Manipulating a Model
The model starts rocking inside the Viewer Panel.
76.
Manipulating a Model
Come back to initial orientation of the Viewer Panel by clicking on the A letter (Anterior) inside the window.
77.
78.
79.
80.
Model Opacity Skin
model Opacity = 0.5
81.
82.
Model Visibility Vessels
model Visibility 0ff
83.
84.
Viewing 3D Models
Show None: the models have disappeared
85.
86.
87.
88.
89.
2D Viewer Images
in the label map layer appear as outlines around the structures that were segmented.
90.
2D Viewer Left
Click on Fg in the Axial View and select the Volume named all in the Axial, Sagittal and Coronal slices.
91.
92.
2D Viewer The
volume all is superimposed on the images
93.
94.
95.
Clipping Models Click
+ or - to select which side of each slice to clip on. Set the sides to: Red Slice + Yellow Slice - Green Slice -
96.
Clipping Models Clipping
Model Result
97.
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