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2008 11 13 Hcls Call

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J
Jun Zhao

Social tagging to enrich biomedical data integration.

Tecnologia
1 de 21
FlyWeb: the way to go for biological data integration ,[object Object],[object Object],[object Object],[object Object]
FlyWeb Application ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Gene expression images ,[object Object],[object Object]
FlyWeb demonstration ,[object Object],[object Object],[object Object],[object Object],[object Object]
 
More than one synonyms of gene “rbf”
 
How does it work? ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
The client side ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],The in situ search application GeneFinder Widget FlyTED Image Widget BDGP Image Widget
Gene name mapping ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
SPARQL queries ,[object Object],[object Object],[object Object],[object Object],[object Object],SELECT * WHERE { ?gene fbutil:anyName &quot; userInput &quot;^^xs:string ; a chado:Feature ; chado:name ?symbol ; chado:uniquename ?flybaseID . OPTIONAL { ?gene chado:dbxref [ chado:accession ?annotationSymbol ] . } OPTIONAL { ?gene chado:synonym [ chado:name ?synonym ] . } OPTIONAL { ?gene chado:synonym [ a syntype:FullName ; chado:name ?fullName ] . } } SELECT DISTINCT * WHERE { ?fullImageURL &quot; + flyted:associatesToGene <http://openflydata.org/id/flyted/gene- geneName > ; flyted:associatesToGene ?gene ; flyted:thumbnail ?thumbnailURL; rdfs:seeAlso ?flytedURL; rdfs:label ?caption }
The RDF data sources ,[object Object],[object Object],[object Object]
Creating RDF from data sources ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
More about the data sources ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
SPARQL server ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
SPARQLite protocol ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Lessons ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Performance ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Further lessons ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Future directions ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Acknowledgement ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

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2008 11 13 Hcls Call

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