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ISSN No: 2456
International
Research
Genetic Diversity Studies in Rice for Bacterial Leaf Blight Resistance
G. Tamilarasan1
, M. Arumugam Pillai
1
PG Scholar, 2
Professor and Head,
1,2
Department of Plant Breeding and Genetics,
3
Department of Plant Pathology,
Agricultural College and Research Institute, Killikulam,Thoothukudi District, Tamil Nadu
ABSTRACT
Bacterial blight (BLB), caused by Xanthomonas
oryzae PV. oryzae (Xoo) is one of the most
destructive diseases active in the major rice growing
countries of Asia. In field level screening, the
genotypes PY5 and Kadaikannan showed immune
against rice BLB. Under artificial condition
114, Adukan and Kadaikannan shows resistant to
bacterial leaf blight. The trait single plant yield
showed positive significant correlation with plant
height (0.21), number of productive tillers (0.19) and
thousand grain weight (0.37).
Keywords: Bacterial leaf blight, Darwin, PDI,
association analysis and genetic divergence
1.INTRODUCTION
The genus of rice Oryza constitutes more than 20
species, among them only two species are cultivable.
The Asian rice Oryza sativa, is cultivated in Asia and
Japan while the African rice Oryza glaberrima
cultivated in West Africa (Watanabe, 1979). The
cultivated rice (Oryza sativa L.) (2n=24) is a
monocotyledon angiosperm belongs to the family
Poaceae and is widely cultivated in t
subtropical regions (Ezuka and Kaku, 2000). More
than 2.7 billion people in the world consume rice as
staple food. Besides providing employment for more
than one billion directly or in allied and supported
activities (Das et al., 2014). In India, rice crop is
cultivated in an area of 433.88 lakh hectares with a
production and productivity of 104.32 million tonnes
and 2404 kg/ha respectively (Annual Report 2016
Dept. of Agriculture, Cooperation and Farmers
Welfare). In Tamil Nadu, rice crop occupy an area of
21 lakh hectares with a production of 93 million
tonnes (Policy Note 2015-16, Minister for Housing,
@ IJTSRD | Available Online @ www.ijtsrd.com | Volume – 2 | Issue – 5 | Jul-Aug 2018
ISSN No: 2456 - 6470 | www.ijtsrd.com | Volume
International Journal of Trend in Scientific
Research and Development (IJTSRD)
International Open Access Journal
Genetic Diversity Studies in Rice for Bacterial Leaf Blight Resistance
, M. Arumugam Pillai2
, R. Kannan3
, S. Merina Prem Kumari
Professor and Head, 3
Professor and Head, 4
Assistant Professor
Department of Plant Breeding and Genetics,
Department of Plant Pathology, 4
Department of Plant Bio-technology
Agricultural College and Research Institute, Killikulam,Thoothukudi District, Tamil Nadu
blight (BLB), caused by Xanthomonas
oryzae PV. oryzae (Xoo) is one of the most
destructive diseases active in the major rice growing
countries of Asia. In field level screening, the
genotypes PY5 and Kadaikannan showed immune
cial condition, IR 11C
114, Adukan and Kadaikannan shows resistant to
bacterial leaf blight. The trait single plant yield
showed positive significant correlation with plant
height (0.21), number of productive tillers (0.19) and
Bacterial leaf blight, Darwin, PDI,
association analysis and genetic divergence
constitutes more than 20
species, among them only two species are cultivable.
, is cultivated in Asia and
Oryza glaberrima is
cultivated in West Africa (Watanabe, 1979). The
L.) (2n=24) is a
monocotyledon angiosperm belongs to the family
Poaceae and is widely cultivated in tropical and
subtropical regions (Ezuka and Kaku, 2000). More
than 2.7 billion people in the world consume rice as
staple food. Besides providing employment for more
than one billion directly or in allied and supported
a, rice crop is
cultivated in an area of 433.88 lakh hectares with a
production and productivity of 104.32 million tonnes
and 2404 kg/ha respectively (Annual Report 2016-17,
Dept. of Agriculture, Cooperation and Farmers
ccupy an area of
21 lakh hectares with a production of 93 million
16, Minister for Housing,
Urban Development and Agriculture, Govt. of Tamil
Nadu). To sustain self-sufficiency and to meet food
grain requirement of future, India
140 million tones of rice by 2030. Rice gets affected
by more than 70 diseases by the infection of bacteria,
fungi, and viruses. Among them bacterial leaf blight
(BLB) caused by Xanthomonas oryzae
(Xoo) is the important diseas
cultivated areas (Khan, 1996). Disease incidence
occurs at all growth stages of rice crop, causing
drastic yield losses ranging between 20 and 30 per
cent. The disease severity can cause a yield loss up to
80 per cent and is influenced by
environmental conditions (28 to 34°C) and degree of
susceptibility of the genotypes (Ou, 1985; Shin et al.,
1992; Mew et al., 1993; Noh et al., 2007).
2. MATERIALS AND METHODS
2.1. Plant materials: Mature seeds of One hundred
and fourteen rice rice germplasm were used.
2.2 Screening for Bacterial Leaf Blight Resistance
2.2.1. Field level screening:
Each germplasm is evaluated for the BLB resistance
by calculating percentage disease index and by giving
scales to the respective PDI reading. For one
germplasm, twenty plants are taken for evaluating the
BLB resistance. The Percentage Disease Index (PDI)
and scales for evaluating the BLB resistance was
analyzed based on the method suggested by
Nagendran et al., (2013).
Percentage Disease Index (PDI) =
ୗ୳୫	୭୤	ୟ୪୪	୒୳୫ୣ୰୧ୡୟ୪	ୖୟ୲୧୬୥ୱ	
୘୭୲ୟ୪	୒୭	୭୤	୪ୣୟ୴ୣୱ	୥୰ୟୢୣୢ	
× ୑ୟ୶୧୫୳୫
Aug 2018 Page: 797
6470 | www.ijtsrd.com | Volume - 2 | Issue – 5
Scientific
(IJTSRD)
International Open Access Journal
Genetic Diversity Studies in Rice for Bacterial Leaf Blight Resistance
, S. Merina Prem Kumari4
Assistant Professor
technology
Agricultural College and Research Institute, Killikulam,Thoothukudi District, Tamil Nadu, India
Urban Development and Agriculture, Govt. of Tamil
sufficiency and to meet food
grain requirement of future, India has to produce 135–
140 million tones of rice by 2030. Rice gets affected
by more than 70 diseases by the infection of bacteria,
fungi, and viruses. Among them bacterial leaf blight
Xanthomonas oryzae pv oryzae
) is the important disease around the rice
cultivated areas (Khan, 1996). Disease incidence
occurs at all growth stages of rice crop, causing
drastic yield losses ranging between 20 and 30 per
cent. The disease severity can cause a yield loss up to
80 per cent and is influenced by various crop stage,
environmental conditions (28 to 34°C) and degree of
susceptibility of the genotypes (Ou, 1985; Shin et al.,
1992; Mew et al., 1993; Noh et al., 2007).
MATERIALS AND METHODS
Mature seeds of One hundred
and fourteen rice rice germplasm were used.
Screening for Bacterial Leaf Blight Resistance
Each germplasm is evaluated for the BLB resistance
by calculating percentage disease index and by giving
scales to the respective PDI reading. For one
germplasm, twenty plants are taken for evaluating the
BLB resistance. The Percentage Disease Index (PDI)
and scales for evaluating the BLB resistance was
analyzed based on the method suggested by
Percentage Disease Index (PDI) =
ଵ଴଴
୑ୟ୶୧୫୳୫	ୋ୰ୟୢୣ	୭ୠ୲ୟ୧୬ୣୢ
International Journal of Trend in Scientific Research and Development (IJTSRD) ISSN: 2456-6470
@ IJTSRD | Available Online @ www.ijtsrd.com | Volume – 2 | Issue – 5 | Jul-Aug 2018 Page: 798
Scoring system used to evaluate breeding lines for
BLB resistance in the field (IRRI, 2006 & Rafi et al.,
2013)
Scale
Disease Leaf Area
(%)
Description
0 0 Immune
1 1-10 Resistant
3 11-25 Moderate resistant
5 26-50
Moderate
susceptible
7 51-75 Susceptible
9 76-100 Highly susceptible
2.2.2. Glass house screening:
Under greenhouse condition all the germplasm were
tested against Xoo, the causal agent of BLB in rice
crop. Seed of rice germplasm were sown in pots
containing fertile soil. Rice plants were grown under
glasshouse conditions. For the inoculation 10 ml of
sterile distilled water poured into culture plates of
most aggressive strain and maintained the inoculum
concentration @109 CFU/ml. Plants with fully fresh
and expanded leaves were inoculated by leaf cutting
method before panicle initiation (Kauffman et al.,
1973). The sterile scissors was dipped in the inoculum
and clipped the 3 leaves per plant approximately 2-3
cm from tip of each leaf. BLB lesions on clipped
leaves were observed 15 days after inoculation.
Scoring system used to evaluate breeding lines for
BLB resistance in the glasshouse (IRRI, 2006)
S.No Lesion length (cm) Description
1. 0-5 Resistant
2. 5-10 Moderately resistant
3. 10-15 Moderately susceptible
4. >15 Susceptible
2.3. Characterization for Morphological traits:
Twenty five days old seedlings of the selected
genotypes are transplanted in the experimental plots
of AC & RI, KKM at a spacing of 20 cm × 20 cm
(within and between rows) in two replications with
standard agronomic practices. Data was recorded on
six plants from each genotype for morphological traits
like plant height, number of productive tillers per
plant, panicle length, single plant yield, days to fifty
per cent flowering, number grains per panicle,
thousand grain weight, grain length and grain breadth.
2.4. Association analysis
The genotypic correlation between yield and its
component traits and between the grain quality traits
were worked out as per the methods suggested by
Johnson et al., (1955).
Genotypic correlation coefficient r୥ሺxyሻ =	
େ୓୚ౝሺ୶୷ሻ
ට൫σౝ
మ୶൯ሺσౝ
మ୷ሻ
Where,
r୥ሺxyሻ = genotypic correlation
coefficients,
COV୥ሺxyሻ = genotypic covariance
between the traits ‘x’ and ‘y’,
σ2
gx = genotypic variance of
the trait ‘x’,
σ2
gy = genotypic variance of
the trait ‘y’,
x = dependent variable x
and
y = independent variable y.
The significance of genotypic correlation coefficient
was tested by referring to the standard table given by
Snedecor et al., (1961).
2.5. Genetic divergence
The genetic divergence among one hundred genotypes
was estimated by Mahalanobis (1949) D2
statistics for
9 quantitative characters.
The calculation of D2
values involved following steps.
Calculation of ࡰ૛values
For each combination, the ‫ܦ‬2
are calculated as follows
‫ܦ‬ଶ
=	෍ሺܻ௜
ଵ
− ܻ௝
ଶ
ሻ
The D2
values were calculated using the software
Window Stat. The computed values were tested for
significance. The average inters and intra cluster
distance tables were obtained from the software
output.
2.5.1. Group constellation and cluster diagram
The grouping of the genotypes into cluster was done
in Window Stat by using Tocher’s method (Rao et al.,
2002). The cluster diagram was drawn using the D2
tables.
3. RESULTS AND DISCUSSION
3.1. Screening of BLB resistance under natural
and artificial conditions
The morphological screening of one hundred and
fourteen rice varieties against the bacterial leaf blight
pathogen under field condition was carried out. Here,
there was no bacterial inoculum applied as well as
there was no artificial favorable condition given to
International Journal of Trend in Scientific Research and Development (IJTSRD) ISSN: 2456-6470
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promote the pathogen growth. In order to test the host
pathogen interaction at natural environment, the field
screening of rice germplasm were carried out. Among
the resistant genotypes PY 5 and Kadaikannan found
to be immune with the lowest PDI value of 0.00 and
0.00 per cent respectively. The genotypes, Jai Shree
Ram and Kurukot registered highest PDI value of
95.00 and 78.57 per cent respectively. The result for
this screening of rice genotypes based on field
screening were presented in the table 1.
Ramalingam et al., 2017 screened twenty five rice
genotypes for bacterial leaf blight resistance and
revealed that the improved rice lines in the genetic
backgrounds of Samba Mahsuri, ASD 16, ADT 43
and IR 24 exhibited the higher level of resistance to
most of the pathotypes studied, whereas the rice lines
derived from ADT 47 background exhibited more
susceptibility.
Rafi et al., (2013) evaluated the BLB resistance in the
rice field for calculating the disease severity and to
find out the severity of BLB disease under absence of
BLB resistance. The genotype, PY 5 and
Kadaikannan which was immune in field screening,
was found to be moderately resistant under the
artificial glasshouse condition, but other naturally
screened resistant germplasm IR 11C 114 were
resistant under artificial screening. The field screened
resistant germplasm IR 12L 138, ACK 12001 and
Veethiruppu were moderate resistant in artificial
screening. This variation in resistance can be due to
escape mechanism adopted by germplasm in the rice
field or due to the precise procedure of clipping
method, which can facilitate easy entry of BLB
pathogen.
In the glasshouse screening, among the resistant
genotypes IR 11C 114, Adukan and Kadaikannan
recorded mean lesion length 3.5, 5.2 and 5.3 cm
respectively while the susceptible genotypes Srilanka,
IR 64, Navarai, IR 72, IRRI 163, TP 10008, Kottara
Samba, Varapukudaichan, Abhya and Kullakar
exhibited mean lesion length of 22.8 cm, 22.5 cm,
21.9 cm, 21.6 cm, 21.3 cm, 21.3 cm, 21.2 cm, 20.8
cm, 19.4 cm and 19.1 cm respectively. The result for
this screening of rice genotypes based on glasshouse
screening were presented in the table 2.
In a similar experiment Mubassir et al., (2016)
screened ten IRRI advanced rice lines and seventeen
rice varieties against the bacterial leaf blight pathogen
and adjusted IRBB5, IRBB21, IRBB60 and IRBB65
as resistant to BLB.
3.2.1. Variability on quantitative traits in rice
germplasm
In general, estimation of PCV was higher than their
corresponding GCV however good correspondence
was observed between GCV and PCV for all
biometric traits. Higher magnitude of phenotypic and
genotypic coefficients of variation were observed for
the traits single plant yield (31.67 and 31.46), number
of filled grains per panicle (31.67 and 31.46), number
of productive tillers (26.20 and 25.10) and 1000 grain
weight (20.58 and 20.43). The results for coefficient
of variation were presented in table 3 and figure 1.
The findings are in accordance with the works of
Vivek et al., (2005) and Ramanjaneyulu et al., (2014).
In the present study, estimates of genetic parameters
revealed that the phenotypic co-efficient was slightly
higher than the genotypic co-efficient of variability
for all the characters studied, which indicated that
they all interacted with the environment. However,
the narrow difference between GCV and PCV, gave
evidence that the variability existing among the
genotypes was mainly due to their genetic makeup.
For morphological characters similar observations
were made by Anbanandan et al., (2009). The high
magnitude of PCV and GCV indicates less influence
of environment on these traits. Selection based on
these traits would be effective. In present study, single
plant yield and number of filled grains per panicle
recorded higher PCV and GCV. This result is in
conformity with the findings of Augustina et al.,
(2013) and Vanisree et al., (2013).
Higher heritability was observed for the traits studied
and it ranged from 76.60 per cent (grain breadth) to
99.40 per cent (days to 50 per cent flowering). The
heritability of number of grains per panicle, thousand
grain weight, plant height, single plant yield, number
of productive tillers and panicle length recorded were
98.70 per cent, 98.50 per cent, 98.50 per cent, 98 per
cent, 91.80 and 83.40 per cent respectively.
Heritability along with genetic gain is a more useful
criterion in predicting the resultant effect for selecting
the best individual (Vanisree et al., 2013). Higher
genetic advance as per cent of mean was observed for
single plant yield (68.20%) followed by number of
grains per panicle (64.40%), number of productive
tillers (49.54%), thousand grain weight (41.77%),
plant height (39.03%), days to fifty per cent flowering
International Journal of Trend in Scientific Research and Development (IJTSRD) ISSN: 2456-6470
@ IJTSRD | Available Online @ www.ijtsrd.com | Volume – 2 | Issue – 5 | Jul-Aug 2018 Page: 800
(24.42%) and grain breadth (23.80%). Moderate
genetic advance as per cent of mean was observed for
grain length (18.83%) and panicle length (17.51%).
The results for coefficient of variation, heritability and
genetic advance as per cent of mean were presented in
table 3 and figure 2.
High heritability and genetic advance as per cent of
mean was observed for the traits. All the traits
selected for the study has moderate to high variations
with almost high genetic advance and heritability.
Similar results of high genetic advance along with
high heritability were obtained by Augustina et al.,
2013 and Vanisree et al., 2013 for plant height,
number of productive tillers per plant and number of
filled grains per panicle. Besides Chanbeni et al.,
2012 reported for plant height and number of filled
grains per panicle. The success of any crop breeding
programme depend on the choice of parents based on
their mean performance.
3.3. Trait association in rice germplasm
The association analysis revealed the positive or
negative relationship of different traits to the yield.
The genotypic correlations between traits indicated
the direction and magnitude of correlated responses to
selection, the relative efficiency of indirect selection
and permit calculation of optimal multiple trait
selection indices (Falconer and Mackay, 1967). It was
observed that there was positive significant
correlation between single plant yield and number of
tillers per panicle besides positively significant
correlation reported between single plant yield and
thousand grain weight. Lang et al., (2014) reported a
negative correlation of days to fifty per cent flowering
with rice single plant yield. Early flowering indicated
short life cycle and early maturing varieties are
advantageous in areas with short rainfall duration
because they grow faster during the vegetative phase
and are thus more competitive with weeds utilizing
less water (Khush, 1995).
Plant height was significant and positively correlated
with the panicle length (0.29), and days to fifty per
cent flowering (0.56), thousand grain weight (0.41),
grain breadth (0.23) and single plant yield (0.21).
Similarly, the number of productive tillers was
significant and positively correlated with the single
plant yield (0.19). The negative significant correlation
was noticed among days to 50 per cent flowering and
grains per panicle (-0.20). Number of productive
tillers was significant and negatively correlated with
the traits days to fifty per cent flowering. Number of
panicle length showed negatively significant
correlation with the trait number of grain per panicle
(-0.20). The number of productive tillers and thousand
grain weight were positive and significantly correlated
with the yield. The relationship between the traits
observed on all the germplasm lines was given in the
table 4 and figure 3. This present study of correlation
was in the agreement with the findings of Bagheri et
al., (2011), Sabesan et al., (2010) and Khan et al.,
(2009).
3.4. Variability studies among rice germplasm
using morphological studies
In the cluster diagram formed by the Tocher’s
method, eighteen major clusters were formed (Table
5). Large number of germplasm were present in
cluster I with 38 individuals, followed by 30
germplasm in cluster II, 20 germplasm in cluster IV 4
germplasm in XI cluster and remaining clusters were
all contain single genotype. The pattern of group
constellation proved the existence of significant
amount of variability. Similar findings also reported
by Ramanjaneyulu et al., (2014). The intra and inter
cluster average distance among eighteen clusters were
variable and depicted in the table 6. The highest intra
cluster distance was recorded for cluster XI (29.02)
followed by cluster V (27.28) and lowest intra cluster
average distance was recorded by cluster I (20.17) and
V (24.77). Genotypes belonging to clusters separated
by the higher genetic distance may be used in
hybridization programme to obtain a wide spectrum
of variation among the segregants. Hybridization
programme involving genetically diverse parents
belonging to different distant clusters would provide
the opportunity for bringing together gene
constellations of diverse nature (Ramanjaneyulu et al.,
(2014).
Cluster XI and XVII showed maximum inter cluster
distance of 67.45 followed by cluster X and XVII
(63.39). The lowest inter cluster distance was noticed
between XIII and XIV (17.78), followed by the
clusters VIII and XV (18.82). To realize much
variability and high heterotic effect, Beevi and
Venkatesan (2015) recommended that parents should
be selected from two clusters having wider inter
cluster distance. Thus, the divergence of the one
hundred and fourteen genotypes used in the study may
be due to involvement of different ancestral pedigree
or uncommon parentage.
International Journal of Trend in Scientific Research and Development (IJTSRD) ISSN: 2456-6470
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4. Conclusion
Rice germplasm screened under field condition, one
per cent were immune towards bacterial blight, nine
per cent genotypes were resistant, thirty two per cent
of them were found to be moderately resistant, thirty
five per cent of rice genotypes were moderately
susceptible, eighteen per cent were susceptible to
bacterial blight and one per cent rice germplam are
highly susceptible to rice bacterial blight (BLB).
Under glasshouse conditions, 0.87% were resistance
to BLB, 20% of them were found to be moderately
resistant, 45% of rice germplasm were moderately
susceptible and 33% of susceptible towards bacterial
blight. Genotypic correlation studies for
morphological characters revealed that Single plant
yield showed positive and significant correlation with
plant height (0.219), number of productive tillers
(0.191) and thousand grain weight (0.370). On the
basis of Mahalanobis ‫2ܦ‬ statistics, the one hundred
and fourteen genotypes were grouped into eighteen
clusters.
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rice. Biotechnology advances, 20(1), 33-47.
28. Sabesan, T. Saravanan, K. and Anandan, A. 2010.
Genetic divergence analysis for certain yield and
quality traits in rice (Oryza sativa L.) grown in
irrigated saline low land of Annamalainagar,
South India. Journal of Central European
Agriculture, 10(4), 405-410.
29. Shin, M.S., Shin, H.T., Jun, B.T. and Choi, B.S.
1992. Effect of inoculation of compatible and
incompatible bacterial blight races on grain yield
and quality of two rice cultivars. Korean J
Breed.;24(3):264–267.
30. Snedecor, G.W. 1961. Statistical methods. Iowa
state College Press, Ames, Iowa, USA.
31. Vanisree, S., K. Swapna, C. H. Damodar Raju, C.
H. Surender Raju and M. Sreedhar. 2013. Genetic
variability and selection criteria in rice. J. Bio. Sci.
Opi. 1(4): 341-346.
32. Vivek, S., S. Singh, S.K. Singh and H. Singh.
2005. Estimation of genetic variability, heritability
and genetic advance in rice (Oryza sativa L.).
Agric. Sci. Digest., 25(3): 207-209.
33. Watanabe, T., Sekizawa, Y., Shimura, M., Suzuki,
Y., Matsumoto, K., Iwata, M. and Mase, S. 1979.
Effects of probenazole (Oryzemate) on rice plants
with reference to controlling rice blast. J. Pesticide
Sci. 4: 53-59.
Table1. Score for BLB resistance under Field Screening
S.No Germplasm Percentage Disease Index (PDI) Scale Description
1. Kadaikannan 0 0 Immune
2. PY5 0 0 Immune
3. Veethiruppu 10 1 Resistant
4. Jai Shree Ram 95 9 Highly Susceptible
5. Kurukot 78.57 9 Highly Susceptible
Table2. Scores obtained in artificial screening of rice germplasm
S.NO Germplasm Mean Lesion length (cm) Description
1. IR 11C 114 3.5 Resistant
2. Adukan 5.2 Moderately Resistant
3. Kadaikannan 5.3 Moderately Resistant
4. Navarai 21.9 Susceptible
5. IR 64 22.5 Susceptible
6. Srilanka 22.8 Susceptible
International Journal of Trend in Scientific Research and Development (IJTSRD) ISSN: 2456-6470
@ IJTSRD | Available Online @ www.ijtsrd.com | Volume – 2 | Issue – 5 | Jul-Aug 2018 Page: 803
Table3. Variance components, genetic advance (GA) and heritability observed for the quantitative traits
COMPONENTS PH NPT PL SPY DFF NGP TGW GL GB
G.V. 609.40 17.62 4.61 222.46 96.71 2140.10 10.59 0.63 0.15
P.V. 618.58 19.20 5.53 226.92 97.25 2168.32 10.76 0.71 0.19
GCV 19.09 25.10 9.31 33.43 11.88 31.46 20.43 9.70 13.20
PCV 19.23 26.20 10.19 33.77 11.92 31.67 20.58 10.29 15.08
Heritability (%) 98.50 91.80 83.40 98.00 99.40 98.70 98.50 88.80 76.60
G.A. (% m) 39.03 49.54 17.51 68.20 24.42 64.40 41.77 18.83 23.80
PH - Plant height, NPT - No of productive tillers, PL - Panicle length, SPY - Single plant yield, DFF - Days to
50% flowering, NGP - Number of filled grains per panicle, TGW - 1000 grain weight, GL - Grain Length, GB -
Grain breadth, GCV - Genotypic Coefficient of Variance, PCV - Phenotypic Coefficient of Variance and G.A.
(% m) - Genetic Advance Per cent of mean.
Table4. Genotypic correlation among various biometric traits in rice genotypes
PH NPT PL DF NGP TGW GL GB SPY
PH 1 -0.20*
0.29*
0.56*
-0.12 0.41*
-0.07 0.23* 0.21*
NPT 1 -0.06 -0.20*
-0.02 0.15 -0.19*
-0.18*
0.19*
PL 1 0.33*
-0.20*
0.15 -0.03 0.14 0.16
DF 1 -0.20*
0.32*
-0.10 0.07 0.15
NGP 1 -0.14 -0.17 -0.07 -0.06
TGW 1 -0.07 -0.02 0.37*
GL 1 0.07 0.07
GB 1 0.00
SPY 1
PH - Plant height, NPT - No of productive tillers, DFF - Days to 50% flowering, NGP - Number of filled grains
per panicle, TGW - 1000 grain weight, GL - Grain Length, GB - Grain breadth, PL - Panicle length and SPY -
Single plant yield.
Table5. Composition of ࡰࡰࡰࡰ૛૛૛૛ cluster for rice genotypes
Cluster
Number of
genotypes
Name of the genotypes
1. 38
TN 1, Co 50, IR 12L 104, IRRI 104, Co 39, IR DL 25 CA, ADT 37, IR 12L 115, IR
BL 5M, BB 8, ASD 18,CR 1009, IR 12L 107, Uma, ASD 16, AD BIO 09518, IR 12L
342, Co 43, IR 72, TPS 4, ACK 12001, ADT 43, IR 12L 214, BPT 5204, PY 5, ACK
14004, LFR 293,IR 64, ADT 42, IR 11L 433, IR 50, IRRI C 134, IR 12L 138, ADT
48, White Sannam, Adukan, IR 11C 114 and IRRI 163.
2. 30
Kadaikannan, Kalakeri, Kitchadi samba, Karsamba, Veethiruppu, Kalakeri, Annada,
Chinnapunjan, Jaya, Kuliyadichan, Thondi, Surakuruvai, Maranellu, Navarai, Anjali,
Purple Puttu, Virendra, Sahbhagi Dhan, Rajalakshmi, Athira, Kurukot, Gowri,
Kaivara Samba, Gowni, Swarna, Bharathi, Kayamma, White Ponni, Meikuruvai and
Abhya.
3. 1 SR22B
4. 20
ACK 13005, ADT 39, Kullakar, Srilanka, Kalyani, Kavya, Jai Shree Ram, Kalyani,
Sadabahar, ADT 46, IR 11C 465, CR Dhan 70, JGL 1798, IR 11T 193, Co 49, HH-
Z17-Y16-Y3-Y2, JGL 348, Kuruvai Kalanjium, TP10008 and Namcheonbyeo.
5. 9
IR 12L 110, MDU 5, Co 45, ADT 41, PY 2, Co 51, Kalinga 3, Pusa Basmati and TP
10106.
6. 1 IR 10A 240
7. 1 Kottara Samba
8. 1 IR 20
9. 1 Vanaprabha
International Journal of Trend in Scientific Research and Development (IJTSRD) ISSN: 2456-6470
@ IJTSRD | Available Online @ www.ijtsrd.com | Volume – 2 | Issue – 5 | Jul-Aug 2018 Page: 804
Cluster
Number of
genotypes
Name of the genotypes
10. 1 Thooyamalli
11. 4 Mapillai Samba, Varapukudaichan, Mattai and Dhalaheera.
12. 1 Poonkar
13. 1 Kerala Gandhakasala
14. 1 Kattanur
15. 1 Seeraga Samba
16. 1 JGL 3855
17. 1 IR-BL-TAR-PI (Co)
18. 1 Krishna Hemavathi
Table6. Average inter and intra cluster ࡰ૛ values for rice genotypes
Clus
ter
1. 2. 3. 4. 5. 6. 7. 8. 9. 10. 11. 12. 13. 14. 15. 16. 17. 18.
1.
20.
19
37.
28
22.
32
25.
85
32.
42
24.
99
36.
48
24.
85
32.
85
44.
28
48.
44
37.
32
38.
58
39.
88
36.
15
30.
26
30.
19
46.
16
2.
20.
35
33.
91
33
42.
07
45.
31
26.
52
34.
53
43.
1
26.
4
31.
22
28.
51
25.
73
30.
02
33.
06
44.
47
52.
81
34.
25
3. 0
19.
49
28.
92
33.
33
33.
78
31.
12
29.
05
33.
21
40.
95
39.
88
41.
48
43.
59
40.
38
25.
19
41.
98
46.
99
4.
24.
77
31.
39
34.
71
32.
99
31.
11
30.
73
35.
3
40.
22
38.
47
38.
8
41.
67
38.
81
29.
4
42.
21
44.
81
5.
27.
28
44.
58
45.
17
35.
8
34.
61
46.
42
45.
89
52.
46
45.
95
50.
62
41.
9
34.
56
45.
23
43.
04
6. 0
39.
66
29.
23
36.
15
53.
48
56.
69
33
46.
85
45.
82
44.
85
39.
09
28.
84
58.
43
7. 0
33.
55
40.
18
26.
36
32.
99
28.
77
35.
64
31.
5
38.
15
38.
57
50.
56
47.
65
8. 0
45.
65
47.
97
48.
57
34.
55
32.
75
28.
53
18.
82
41.
52
33.
11
34.
96
9. 0
40.
66
42.
6
46.
11
50.
92
57.
44
55.
63
25.
91
46.
32
59.
19
10. 0
25.
47
38.
42
39.
99
43.
86
48.
69
42.
2
63.
39
49.
04
11.
29.
02
43.
11
44.
08
49.
09
49.
06
49.
34
67.
45
46.
21
12. 0
31.
56
31.
55
39.
18
51.
13
49.
15
47.
42
13. 0
17.
78
23.
3
46.
76
44.
88
26.
62
14. 0
20.
58
49.
9
44.
35
33.
15
15. 0
49.
32
42.
6
21.
6
16. 0
38.
19
57.
43
17. 0
56.
25
18. 0
Intra cluster – Diagonal values, Inter cluster – Off diagonal values
International Journal of Trend in Scientific Research and Development (IJTSRD) ISSN: 2456-6470
@ IJTSRD | Available Online @ www.ijtsrd.com | Volume – 2 | Issue – 5 | Jul-Aug 2018 Page: 805
Figure1. Graphical representation of genotypic and phenotypic covariance obtained for various traits
1. PH - Plant height
2. NPT - No of productive tillers
3. PL - Panicle length
4. SPY - Single plant yield
5. DFF - Days to 50% flowering
6. NGP - Number of filled grains per panicle
7. TGW - 1000 grain weight
8. GL - Grain Length
9. GB - Grain breadth
Figure2. Graphical representation of heritability and genetic advance obtained for various traits
1. PH - Plant height
2. NPT - No of productive tillers
3. PL - Panicle length
4. SPY - Single plant yield
5. DFF - Days to 50% flowering
6. NGP - Number of filled grains per panicle
7. TGW - 1000 grain weight
8. GL - Grain Length
9. GB - Grain breadth
19.09
25.11
9.31
33.44
11.89
31.47
20.43
9.70
13.20
19.24
26.21
10.20
33.77
11.92
31.67
20.59
10.30
15.09
0.00
10.00
20.00
30.00
40.00
50.00
60.00
70.00
80.00
PH NPT PL SPY DFF NGP TGW GL GB
GCV & PCV
PCV
GCV
98.50
91.80
83.40
98.00 99.40 98.70 98.50
88.80
76.60
39.04
49.55
17.52
68.20
24.42
64.40
41.78
18.84
23.80
0.00
20.00
40.00
60.00
80.00
100.00
120.00
PH NPT PL SPY DFF NGP TGW GL GB
Heritability and Genetic Advance
Heritability (%) G.A. (% m)
International Journal of Trend in Scientific Research and Development (IJTSRD) ISSN: 2456
@ IJTSRD | Available Online @ www.ijtsrd.com
Figure3. Graphical representation of Association among various traits
1. PH - Plant height
2. NPT - No of productive tillers
3. PL - Panicle length
4. SPY - Single plant yield
5. DFF - Days to 50% flowering
-0.4
-0.2
0
0.2
0.4
0.6
0.8
1 Genotypic Correlation
International Journal of Trend in Scientific Research and Development (IJTSRD) ISSN: 2456
@ IJTSRD | Available Online @ www.ijtsrd.com | Volume – 2 | Issue – 5 | Jul-Aug 2018
Figure3. Graphical representation of Association among various traits
6. NGP - Number of filled grains per panicle
7. TGW - 1000 grain weight
8. GL - Grain Length
9. GB - Grain breadth
Genotypic Correlation
International Journal of Trend in Scientific Research and Development (IJTSRD) ISSN: 2456-6470
Aug 2018 Page: 806
Figure3. Graphical representation of Association among various traits
Number of filled grains per panicle
PH
NPT
PL
DF
NGP
1000GW
GL
GB
SPY

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Genetic Diversity Studies in Rice for Bacterial Leaf Blight Resistance

  • 1. @ IJTSRD | Available Online @ www.ijtsrd.com ISSN No: 2456 International Research Genetic Diversity Studies in Rice for Bacterial Leaf Blight Resistance G. Tamilarasan1 , M. Arumugam Pillai 1 PG Scholar, 2 Professor and Head, 1,2 Department of Plant Breeding and Genetics, 3 Department of Plant Pathology, Agricultural College and Research Institute, Killikulam,Thoothukudi District, Tamil Nadu ABSTRACT Bacterial blight (BLB), caused by Xanthomonas oryzae PV. oryzae (Xoo) is one of the most destructive diseases active in the major rice growing countries of Asia. In field level screening, the genotypes PY5 and Kadaikannan showed immune against rice BLB. Under artificial condition 114, Adukan and Kadaikannan shows resistant to bacterial leaf blight. The trait single plant yield showed positive significant correlation with plant height (0.21), number of productive tillers (0.19) and thousand grain weight (0.37). Keywords: Bacterial leaf blight, Darwin, PDI, association analysis and genetic divergence 1.INTRODUCTION The genus of rice Oryza constitutes more than 20 species, among them only two species are cultivable. The Asian rice Oryza sativa, is cultivated in Asia and Japan while the African rice Oryza glaberrima cultivated in West Africa (Watanabe, 1979). The cultivated rice (Oryza sativa L.) (2n=24) is a monocotyledon angiosperm belongs to the family Poaceae and is widely cultivated in t subtropical regions (Ezuka and Kaku, 2000). More than 2.7 billion people in the world consume rice as staple food. Besides providing employment for more than one billion directly or in allied and supported activities (Das et al., 2014). In India, rice crop is cultivated in an area of 433.88 lakh hectares with a production and productivity of 104.32 million tonnes and 2404 kg/ha respectively (Annual Report 2016 Dept. of Agriculture, Cooperation and Farmers Welfare). In Tamil Nadu, rice crop occupy an area of 21 lakh hectares with a production of 93 million tonnes (Policy Note 2015-16, Minister for Housing, @ IJTSRD | Available Online @ www.ijtsrd.com | Volume – 2 | Issue – 5 | Jul-Aug 2018 ISSN No: 2456 - 6470 | www.ijtsrd.com | Volume International Journal of Trend in Scientific Research and Development (IJTSRD) International Open Access Journal Genetic Diversity Studies in Rice for Bacterial Leaf Blight Resistance , M. Arumugam Pillai2 , R. Kannan3 , S. Merina Prem Kumari Professor and Head, 3 Professor and Head, 4 Assistant Professor Department of Plant Breeding and Genetics, Department of Plant Pathology, 4 Department of Plant Bio-technology Agricultural College and Research Institute, Killikulam,Thoothukudi District, Tamil Nadu blight (BLB), caused by Xanthomonas oryzae PV. oryzae (Xoo) is one of the most destructive diseases active in the major rice growing countries of Asia. In field level screening, the genotypes PY5 and Kadaikannan showed immune cial condition, IR 11C 114, Adukan and Kadaikannan shows resistant to bacterial leaf blight. The trait single plant yield showed positive significant correlation with plant height (0.21), number of productive tillers (0.19) and Bacterial leaf blight, Darwin, PDI, association analysis and genetic divergence constitutes more than 20 species, among them only two species are cultivable. , is cultivated in Asia and Oryza glaberrima is cultivated in West Africa (Watanabe, 1979). The L.) (2n=24) is a monocotyledon angiosperm belongs to the family Poaceae and is widely cultivated in tropical and subtropical regions (Ezuka and Kaku, 2000). More than 2.7 billion people in the world consume rice as staple food. Besides providing employment for more than one billion directly or in allied and supported a, rice crop is cultivated in an area of 433.88 lakh hectares with a production and productivity of 104.32 million tonnes and 2404 kg/ha respectively (Annual Report 2016-17, Dept. of Agriculture, Cooperation and Farmers ccupy an area of 21 lakh hectares with a production of 93 million 16, Minister for Housing, Urban Development and Agriculture, Govt. of Tamil Nadu). To sustain self-sufficiency and to meet food grain requirement of future, India 140 million tones of rice by 2030. Rice gets affected by more than 70 diseases by the infection of bacteria, fungi, and viruses. Among them bacterial leaf blight (BLB) caused by Xanthomonas oryzae (Xoo) is the important diseas cultivated areas (Khan, 1996). Disease incidence occurs at all growth stages of rice crop, causing drastic yield losses ranging between 20 and 30 per cent. The disease severity can cause a yield loss up to 80 per cent and is influenced by environmental conditions (28 to 34°C) and degree of susceptibility of the genotypes (Ou, 1985; Shin et al., 1992; Mew et al., 1993; Noh et al., 2007). 2. MATERIALS AND METHODS 2.1. Plant materials: Mature seeds of One hundred and fourteen rice rice germplasm were used. 2.2 Screening for Bacterial Leaf Blight Resistance 2.2.1. Field level screening: Each germplasm is evaluated for the BLB resistance by calculating percentage disease index and by giving scales to the respective PDI reading. For one germplasm, twenty plants are taken for evaluating the BLB resistance. The Percentage Disease Index (PDI) and scales for evaluating the BLB resistance was analyzed based on the method suggested by Nagendran et al., (2013). Percentage Disease Index (PDI) = ୗ୳୫ ୭୤ ୟ୪୪ ୒୳୫ୣ୰୧ୡୟ୪ ୖୟ୲୧୬୥ୱ ୘୭୲ୟ୪ ୒୭ ୭୤ ୪ୣୟ୴ୣୱ ୥୰ୟୢୣୢ × ୑ୟ୶୧୫୳୫ Aug 2018 Page: 797 6470 | www.ijtsrd.com | Volume - 2 | Issue – 5 Scientific (IJTSRD) International Open Access Journal Genetic Diversity Studies in Rice for Bacterial Leaf Blight Resistance , S. Merina Prem Kumari4 Assistant Professor technology Agricultural College and Research Institute, Killikulam,Thoothukudi District, Tamil Nadu, India Urban Development and Agriculture, Govt. of Tamil sufficiency and to meet food grain requirement of future, India has to produce 135– 140 million tones of rice by 2030. Rice gets affected by more than 70 diseases by the infection of bacteria, fungi, and viruses. Among them bacterial leaf blight Xanthomonas oryzae pv oryzae ) is the important disease around the rice cultivated areas (Khan, 1996). Disease incidence occurs at all growth stages of rice crop, causing drastic yield losses ranging between 20 and 30 per cent. The disease severity can cause a yield loss up to 80 per cent and is influenced by various crop stage, environmental conditions (28 to 34°C) and degree of susceptibility of the genotypes (Ou, 1985; Shin et al., 1992; Mew et al., 1993; Noh et al., 2007). MATERIALS AND METHODS Mature seeds of One hundred and fourteen rice rice germplasm were used. Screening for Bacterial Leaf Blight Resistance Each germplasm is evaluated for the BLB resistance by calculating percentage disease index and by giving scales to the respective PDI reading. For one germplasm, twenty plants are taken for evaluating the BLB resistance. The Percentage Disease Index (PDI) and scales for evaluating the BLB resistance was analyzed based on the method suggested by Percentage Disease Index (PDI) = ଵ଴଴ ୑ୟ୶୧୫୳୫ ୋ୰ୟୢୣ ୭ୠ୲ୟ୧୬ୣୢ
  • 2. International Journal of Trend in Scientific Research and Development (IJTSRD) ISSN: 2456-6470 @ IJTSRD | Available Online @ www.ijtsrd.com | Volume – 2 | Issue – 5 | Jul-Aug 2018 Page: 798 Scoring system used to evaluate breeding lines for BLB resistance in the field (IRRI, 2006 & Rafi et al., 2013) Scale Disease Leaf Area (%) Description 0 0 Immune 1 1-10 Resistant 3 11-25 Moderate resistant 5 26-50 Moderate susceptible 7 51-75 Susceptible 9 76-100 Highly susceptible 2.2.2. Glass house screening: Under greenhouse condition all the germplasm were tested against Xoo, the causal agent of BLB in rice crop. Seed of rice germplasm were sown in pots containing fertile soil. Rice plants were grown under glasshouse conditions. For the inoculation 10 ml of sterile distilled water poured into culture plates of most aggressive strain and maintained the inoculum concentration @109 CFU/ml. Plants with fully fresh and expanded leaves were inoculated by leaf cutting method before panicle initiation (Kauffman et al., 1973). The sterile scissors was dipped in the inoculum and clipped the 3 leaves per plant approximately 2-3 cm from tip of each leaf. BLB lesions on clipped leaves were observed 15 days after inoculation. Scoring system used to evaluate breeding lines for BLB resistance in the glasshouse (IRRI, 2006) S.No Lesion length (cm) Description 1. 0-5 Resistant 2. 5-10 Moderately resistant 3. 10-15 Moderately susceptible 4. >15 Susceptible 2.3. Characterization for Morphological traits: Twenty five days old seedlings of the selected genotypes are transplanted in the experimental plots of AC & RI, KKM at a spacing of 20 cm × 20 cm (within and between rows) in two replications with standard agronomic practices. Data was recorded on six plants from each genotype for morphological traits like plant height, number of productive tillers per plant, panicle length, single plant yield, days to fifty per cent flowering, number grains per panicle, thousand grain weight, grain length and grain breadth. 2.4. Association analysis The genotypic correlation between yield and its component traits and between the grain quality traits were worked out as per the methods suggested by Johnson et al., (1955). Genotypic correlation coefficient r୥ሺxyሻ = େ୓୚ౝሺ୶୷ሻ ට൫σౝ మ୶൯ሺσౝ మ୷ሻ Where, r୥ሺxyሻ = genotypic correlation coefficients, COV୥ሺxyሻ = genotypic covariance between the traits ‘x’ and ‘y’, σ2 gx = genotypic variance of the trait ‘x’, σ2 gy = genotypic variance of the trait ‘y’, x = dependent variable x and y = independent variable y. The significance of genotypic correlation coefficient was tested by referring to the standard table given by Snedecor et al., (1961). 2.5. Genetic divergence The genetic divergence among one hundred genotypes was estimated by Mahalanobis (1949) D2 statistics for 9 quantitative characters. The calculation of D2 values involved following steps. Calculation of ࡰ૛values For each combination, the ‫ܦ‬2 are calculated as follows ‫ܦ‬ଶ = ෍ሺܻ௜ ଵ − ܻ௝ ଶ ሻ The D2 values were calculated using the software Window Stat. The computed values were tested for significance. The average inters and intra cluster distance tables were obtained from the software output. 2.5.1. Group constellation and cluster diagram The grouping of the genotypes into cluster was done in Window Stat by using Tocher’s method (Rao et al., 2002). The cluster diagram was drawn using the D2 tables. 3. RESULTS AND DISCUSSION 3.1. Screening of BLB resistance under natural and artificial conditions The morphological screening of one hundred and fourteen rice varieties against the bacterial leaf blight pathogen under field condition was carried out. Here, there was no bacterial inoculum applied as well as there was no artificial favorable condition given to
  • 3. International Journal of Trend in Scientific Research and Development (IJTSRD) ISSN: 2456-6470 @ IJTSRD | Available Online @ www.ijtsrd.com | Volume – 2 | Issue – 5 | Jul-Aug 2018 Page: 799 promote the pathogen growth. In order to test the host pathogen interaction at natural environment, the field screening of rice germplasm were carried out. Among the resistant genotypes PY 5 and Kadaikannan found to be immune with the lowest PDI value of 0.00 and 0.00 per cent respectively. The genotypes, Jai Shree Ram and Kurukot registered highest PDI value of 95.00 and 78.57 per cent respectively. The result for this screening of rice genotypes based on field screening were presented in the table 1. Ramalingam et al., 2017 screened twenty five rice genotypes for bacterial leaf blight resistance and revealed that the improved rice lines in the genetic backgrounds of Samba Mahsuri, ASD 16, ADT 43 and IR 24 exhibited the higher level of resistance to most of the pathotypes studied, whereas the rice lines derived from ADT 47 background exhibited more susceptibility. Rafi et al., (2013) evaluated the BLB resistance in the rice field for calculating the disease severity and to find out the severity of BLB disease under absence of BLB resistance. The genotype, PY 5 and Kadaikannan which was immune in field screening, was found to be moderately resistant under the artificial glasshouse condition, but other naturally screened resistant germplasm IR 11C 114 were resistant under artificial screening. The field screened resistant germplasm IR 12L 138, ACK 12001 and Veethiruppu were moderate resistant in artificial screening. This variation in resistance can be due to escape mechanism adopted by germplasm in the rice field or due to the precise procedure of clipping method, which can facilitate easy entry of BLB pathogen. In the glasshouse screening, among the resistant genotypes IR 11C 114, Adukan and Kadaikannan recorded mean lesion length 3.5, 5.2 and 5.3 cm respectively while the susceptible genotypes Srilanka, IR 64, Navarai, IR 72, IRRI 163, TP 10008, Kottara Samba, Varapukudaichan, Abhya and Kullakar exhibited mean lesion length of 22.8 cm, 22.5 cm, 21.9 cm, 21.6 cm, 21.3 cm, 21.3 cm, 21.2 cm, 20.8 cm, 19.4 cm and 19.1 cm respectively. The result for this screening of rice genotypes based on glasshouse screening were presented in the table 2. In a similar experiment Mubassir et al., (2016) screened ten IRRI advanced rice lines and seventeen rice varieties against the bacterial leaf blight pathogen and adjusted IRBB5, IRBB21, IRBB60 and IRBB65 as resistant to BLB. 3.2.1. Variability on quantitative traits in rice germplasm In general, estimation of PCV was higher than their corresponding GCV however good correspondence was observed between GCV and PCV for all biometric traits. Higher magnitude of phenotypic and genotypic coefficients of variation were observed for the traits single plant yield (31.67 and 31.46), number of filled grains per panicle (31.67 and 31.46), number of productive tillers (26.20 and 25.10) and 1000 grain weight (20.58 and 20.43). The results for coefficient of variation were presented in table 3 and figure 1. The findings are in accordance with the works of Vivek et al., (2005) and Ramanjaneyulu et al., (2014). In the present study, estimates of genetic parameters revealed that the phenotypic co-efficient was slightly higher than the genotypic co-efficient of variability for all the characters studied, which indicated that they all interacted with the environment. However, the narrow difference between GCV and PCV, gave evidence that the variability existing among the genotypes was mainly due to their genetic makeup. For morphological characters similar observations were made by Anbanandan et al., (2009). The high magnitude of PCV and GCV indicates less influence of environment on these traits. Selection based on these traits would be effective. In present study, single plant yield and number of filled grains per panicle recorded higher PCV and GCV. This result is in conformity with the findings of Augustina et al., (2013) and Vanisree et al., (2013). Higher heritability was observed for the traits studied and it ranged from 76.60 per cent (grain breadth) to 99.40 per cent (days to 50 per cent flowering). The heritability of number of grains per panicle, thousand grain weight, plant height, single plant yield, number of productive tillers and panicle length recorded were 98.70 per cent, 98.50 per cent, 98.50 per cent, 98 per cent, 91.80 and 83.40 per cent respectively. Heritability along with genetic gain is a more useful criterion in predicting the resultant effect for selecting the best individual (Vanisree et al., 2013). Higher genetic advance as per cent of mean was observed for single plant yield (68.20%) followed by number of grains per panicle (64.40%), number of productive tillers (49.54%), thousand grain weight (41.77%), plant height (39.03%), days to fifty per cent flowering
  • 4. International Journal of Trend in Scientific Research and Development (IJTSRD) ISSN: 2456-6470 @ IJTSRD | Available Online @ www.ijtsrd.com | Volume – 2 | Issue – 5 | Jul-Aug 2018 Page: 800 (24.42%) and grain breadth (23.80%). Moderate genetic advance as per cent of mean was observed for grain length (18.83%) and panicle length (17.51%). The results for coefficient of variation, heritability and genetic advance as per cent of mean were presented in table 3 and figure 2. High heritability and genetic advance as per cent of mean was observed for the traits. All the traits selected for the study has moderate to high variations with almost high genetic advance and heritability. Similar results of high genetic advance along with high heritability were obtained by Augustina et al., 2013 and Vanisree et al., 2013 for plant height, number of productive tillers per plant and number of filled grains per panicle. Besides Chanbeni et al., 2012 reported for plant height and number of filled grains per panicle. The success of any crop breeding programme depend on the choice of parents based on their mean performance. 3.3. Trait association in rice germplasm The association analysis revealed the positive or negative relationship of different traits to the yield. The genotypic correlations between traits indicated the direction and magnitude of correlated responses to selection, the relative efficiency of indirect selection and permit calculation of optimal multiple trait selection indices (Falconer and Mackay, 1967). It was observed that there was positive significant correlation between single plant yield and number of tillers per panicle besides positively significant correlation reported between single plant yield and thousand grain weight. Lang et al., (2014) reported a negative correlation of days to fifty per cent flowering with rice single plant yield. Early flowering indicated short life cycle and early maturing varieties are advantageous in areas with short rainfall duration because they grow faster during the vegetative phase and are thus more competitive with weeds utilizing less water (Khush, 1995). Plant height was significant and positively correlated with the panicle length (0.29), and days to fifty per cent flowering (0.56), thousand grain weight (0.41), grain breadth (0.23) and single plant yield (0.21). Similarly, the number of productive tillers was significant and positively correlated with the single plant yield (0.19). The negative significant correlation was noticed among days to 50 per cent flowering and grains per panicle (-0.20). Number of productive tillers was significant and negatively correlated with the traits days to fifty per cent flowering. Number of panicle length showed negatively significant correlation with the trait number of grain per panicle (-0.20). The number of productive tillers and thousand grain weight were positive and significantly correlated with the yield. The relationship between the traits observed on all the germplasm lines was given in the table 4 and figure 3. This present study of correlation was in the agreement with the findings of Bagheri et al., (2011), Sabesan et al., (2010) and Khan et al., (2009). 3.4. Variability studies among rice germplasm using morphological studies In the cluster diagram formed by the Tocher’s method, eighteen major clusters were formed (Table 5). Large number of germplasm were present in cluster I with 38 individuals, followed by 30 germplasm in cluster II, 20 germplasm in cluster IV 4 germplasm in XI cluster and remaining clusters were all contain single genotype. The pattern of group constellation proved the existence of significant amount of variability. Similar findings also reported by Ramanjaneyulu et al., (2014). The intra and inter cluster average distance among eighteen clusters were variable and depicted in the table 6. The highest intra cluster distance was recorded for cluster XI (29.02) followed by cluster V (27.28) and lowest intra cluster average distance was recorded by cluster I (20.17) and V (24.77). Genotypes belonging to clusters separated by the higher genetic distance may be used in hybridization programme to obtain a wide spectrum of variation among the segregants. Hybridization programme involving genetically diverse parents belonging to different distant clusters would provide the opportunity for bringing together gene constellations of diverse nature (Ramanjaneyulu et al., (2014). Cluster XI and XVII showed maximum inter cluster distance of 67.45 followed by cluster X and XVII (63.39). The lowest inter cluster distance was noticed between XIII and XIV (17.78), followed by the clusters VIII and XV (18.82). To realize much variability and high heterotic effect, Beevi and Venkatesan (2015) recommended that parents should be selected from two clusters having wider inter cluster distance. Thus, the divergence of the one hundred and fourteen genotypes used in the study may be due to involvement of different ancestral pedigree or uncommon parentage.
  • 5. International Journal of Trend in Scientific Research and Development (IJTSRD) ISSN: 2456-6470 @ IJTSRD | Available Online @ www.ijtsrd.com | Volume – 2 | Issue – 5 | Jul-Aug 2018 Page: 801 4. Conclusion Rice germplasm screened under field condition, one per cent were immune towards bacterial blight, nine per cent genotypes were resistant, thirty two per cent of them were found to be moderately resistant, thirty five per cent of rice genotypes were moderately susceptible, eighteen per cent were susceptible to bacterial blight and one per cent rice germplam are highly susceptible to rice bacterial blight (BLB). Under glasshouse conditions, 0.87% were resistance to BLB, 20% of them were found to be moderately resistant, 45% of rice germplasm were moderately susceptible and 33% of susceptible towards bacterial blight. Genotypic correlation studies for morphological characters revealed that Single plant yield showed positive and significant correlation with plant height (0.219), number of productive tillers (0.191) and thousand grain weight (0.370). On the basis of Mahalanobis ‫2ܦ‬ statistics, the one hundred and fourteen genotypes were grouped into eighteen clusters. REFERENCE 1. Anbanandan, V. Saravanan, K. & Sabesan, T. 2009. Variability, heritability and genetic advance in rice (Oryza sativa L.). International Journal of Plant Sciences (Muzaffarnagar), 4(1), 61-63. 2. Annual Report 2016-17, Dept. of Agriculture, Cooperation and Farmers Welfare. 3. Augustina, U. A. Iwunor, O. P. & Ijeoma, O. R. 2013. Heritability and character correlation among some rice genotypes for yield and yield components. Journal of Plant Breeding and Genetics, 1(2), 73-84. 4. Babaei, A. Nematzadeh, G.-A and Hashemi, H. 2011. An evaluation of genetic differentiation in rice mutants using semi-random markers and morphological characteristics. Australian Journal of Crop Science, 5(13), 1715. 5. Bagheri, N., N. Babaeian-Jelodar and A. Pasha. 2011. Path co-efficient analysis for yield and yield components in diverse rice (Oryza sativa L.) genotypes. Biharean Biologist., 5(1): 101-103. 6. Beevi, H. A. and Venkatesan, M. 2015. Genetic divergence studies in rice (Oryza sativa L.) genotypes under natural saline condition. Journal of the Andaman Science Association, 20(1), 35- 38. 7. Das, B. Sengupta, S. Prasad, M. and Ghose, T. K. 2014. Genetic diversity of the conserved motifs of six bacterial leaf blight resistance genes in a set of rice landraces. BMC genetics, 15(1), 82. 8. Ezuka, A. and Kaku, H. 2000. A historical review of bacterial blight of rice. Bulletin of the National Institute of Agrobiological Resources (15), 1-207. 9. Falconer, D. S. Mackay, T. F. and Frankham, R. 1967. Introduction to quantitative genetics (4th edn). Trends in Genetics, 12(7), 280. 10. IRRI, International Rice Research Institute. 2006. www.knowledgebank.irri.org/ 11. Johnson, H. W. Robinson, H. and Comstock, R. E. 1955. Genotypic and Phenotypic Correlations in Soybeans and Their Implications in Selection 1. Agronomy journal, 47(10), 477-483. 12. Kauffman and, S.A.Glass, L. (1973) the logical analysis of continuous non-linear biochemical control networks. J. Theor. Biol., 39, 103–129. 13. Khan, A. S., M. Imran and M. Ashtaq. 2009. Estimation of variability and correlations for grain yield components in Rice (Oryza sativa L.). American-Eurasian J. Agrl. Environ. Sci., 6(5): 585-590. 14. Khan, M.G. 1996. A brief note on rice research institute Kalashah Kaku. In: Report of the monitoring visit on fine grain aromatic rice in India, Iran, Pakistan and Thiland. IRRI, Manila, Philippines. pp. 96-101. 15. Khush, G. S. (1995). Breaking the yield frontier of rice. Geo Journal, 35(3), 329-332. 16. Lang.P, Tonnessen, B. W. Manosalva, , J. M., Baraoidan, M. Bordeos, A. Mauleon, R. and Leach, J. E. 2014. Rice phenylalanine ammonia- lyase gene OsPAL4 is associated with broad spectrum disease resistance. Plant molecular biology, 87(3), 273-286. 17. Mahalanobis, P. 1949. Historical note on the D²- statistics, Appendix I. Anthropological survey of United Provinces, 1941: a statistical study. 18. Mew, T. Alvarez, A., Leach, J. and Swings, J. 1993. Focus on bacterial blight of rice. Plant disease, 77(1), 5-12. 19. Mubassir, M. H. M., K. M. Nasiruddin, N. H. Shahin, S. N. Begum, M. K. Saha and A. Q. M. R. Bazlur. 2016. SSR Marker Based Genetic Diversity Analysis of Some Rice Lines and Varieties for Bacterial Leaf Blight Resistance. J.Pharm. Cheml. Biol. Sci., 4(4): 475-486.
  • 6. International Journal of Trend in Scientific Research and Development (IJTSRD) ISSN: 2456-6470 @ IJTSRD | Available Online @ www.ijtsrd.com | Volume – 2 | Issue – 5 | Jul-Aug 2018 Page: 802 20. Nagendran, K. Karthikeyan, G. Peeran, M. F. Raveendran, M. Prabakar, K. and Raguchander, T. 2013. Management of bacterial leaf blight disease in rice with endophytic bacteria. World Appl Sci J, 28(12), 2229-2241. 21. Noh, T.H., Lee, D.K., Park, J.C., Shim, H.K., Choi, M.Y., Kang, M.H., and Kim, J.D. 2007. Effect of bacterial leaf blight occurrence on rice yield and grain quality in different rice growth stage. Res Plant Dis., 13:20–23. 22. Ou, S. H. 1985. Bacterial leaf blight in rice diseases. Common wealth microbiological institutes, Cambrian News, Aberystwyth., 70-74. 23. Policy Note 2015-16, Minister for Housing, Urban Development and Agriculture, Govt. of Tamil Nadu. 24. Rafi, A. Hameed, A. Akhtar, M. A. Shah, S. M. A. Junaid, M. Shahid, M. & Shah, S. F. 2013. Field based assessment of rice bacterial leaf blight in major rice growing zones of Pakistan. Sarhad J Agric, 29, 415-422. 25. Ramalingam, J. Savitha, P. Alagarasan, G. Saraswathi, R. and Chandrababu R. 2017. Functional Marker Assisted Improvement of Stable Cytoplasmic Male Sterile Lines of Rice for Bacterial Blight Resistance. Frontiers in plant science. 26. Ramanjaneyulu, A. Shankar, V. G. Neelima, T. and Shashibhusahn, D. 2014. Genetic analysis of rice (Oryza sativa L.) genotypes under aerobic conditions on Alfisols. Sabrao Journal of Breeding & Genetics, 46(1). 27. Rao, K. K. Lakshminarasu, M. and Jena, K. 2002. DNA markers and marker-assisted breeding for durable resistance to bacterial blight disease in rice. Biotechnology advances, 20(1), 33-47. 28. Sabesan, T. Saravanan, K. and Anandan, A. 2010. Genetic divergence analysis for certain yield and quality traits in rice (Oryza sativa L.) grown in irrigated saline low land of Annamalainagar, South India. Journal of Central European Agriculture, 10(4), 405-410. 29. Shin, M.S., Shin, H.T., Jun, B.T. and Choi, B.S. 1992. Effect of inoculation of compatible and incompatible bacterial blight races on grain yield and quality of two rice cultivars. Korean J Breed.;24(3):264–267. 30. Snedecor, G.W. 1961. Statistical methods. Iowa state College Press, Ames, Iowa, USA. 31. Vanisree, S., K. Swapna, C. H. Damodar Raju, C. H. Surender Raju and M. Sreedhar. 2013. Genetic variability and selection criteria in rice. J. Bio. Sci. Opi. 1(4): 341-346. 32. Vivek, S., S. Singh, S.K. Singh and H. Singh. 2005. Estimation of genetic variability, heritability and genetic advance in rice (Oryza sativa L.). Agric. Sci. Digest., 25(3): 207-209. 33. Watanabe, T., Sekizawa, Y., Shimura, M., Suzuki, Y., Matsumoto, K., Iwata, M. and Mase, S. 1979. Effects of probenazole (Oryzemate) on rice plants with reference to controlling rice blast. J. Pesticide Sci. 4: 53-59. Table1. Score for BLB resistance under Field Screening S.No Germplasm Percentage Disease Index (PDI) Scale Description 1. Kadaikannan 0 0 Immune 2. PY5 0 0 Immune 3. Veethiruppu 10 1 Resistant 4. Jai Shree Ram 95 9 Highly Susceptible 5. Kurukot 78.57 9 Highly Susceptible Table2. Scores obtained in artificial screening of rice germplasm S.NO Germplasm Mean Lesion length (cm) Description 1. IR 11C 114 3.5 Resistant 2. Adukan 5.2 Moderately Resistant 3. Kadaikannan 5.3 Moderately Resistant 4. Navarai 21.9 Susceptible 5. IR 64 22.5 Susceptible 6. Srilanka 22.8 Susceptible
  • 7. International Journal of Trend in Scientific Research and Development (IJTSRD) ISSN: 2456-6470 @ IJTSRD | Available Online @ www.ijtsrd.com | Volume – 2 | Issue – 5 | Jul-Aug 2018 Page: 803 Table3. Variance components, genetic advance (GA) and heritability observed for the quantitative traits COMPONENTS PH NPT PL SPY DFF NGP TGW GL GB G.V. 609.40 17.62 4.61 222.46 96.71 2140.10 10.59 0.63 0.15 P.V. 618.58 19.20 5.53 226.92 97.25 2168.32 10.76 0.71 0.19 GCV 19.09 25.10 9.31 33.43 11.88 31.46 20.43 9.70 13.20 PCV 19.23 26.20 10.19 33.77 11.92 31.67 20.58 10.29 15.08 Heritability (%) 98.50 91.80 83.40 98.00 99.40 98.70 98.50 88.80 76.60 G.A. (% m) 39.03 49.54 17.51 68.20 24.42 64.40 41.77 18.83 23.80 PH - Plant height, NPT - No of productive tillers, PL - Panicle length, SPY - Single plant yield, DFF - Days to 50% flowering, NGP - Number of filled grains per panicle, TGW - 1000 grain weight, GL - Grain Length, GB - Grain breadth, GCV - Genotypic Coefficient of Variance, PCV - Phenotypic Coefficient of Variance and G.A. (% m) - Genetic Advance Per cent of mean. Table4. Genotypic correlation among various biometric traits in rice genotypes PH NPT PL DF NGP TGW GL GB SPY PH 1 -0.20* 0.29* 0.56* -0.12 0.41* -0.07 0.23* 0.21* NPT 1 -0.06 -0.20* -0.02 0.15 -0.19* -0.18* 0.19* PL 1 0.33* -0.20* 0.15 -0.03 0.14 0.16 DF 1 -0.20* 0.32* -0.10 0.07 0.15 NGP 1 -0.14 -0.17 -0.07 -0.06 TGW 1 -0.07 -0.02 0.37* GL 1 0.07 0.07 GB 1 0.00 SPY 1 PH - Plant height, NPT - No of productive tillers, DFF - Days to 50% flowering, NGP - Number of filled grains per panicle, TGW - 1000 grain weight, GL - Grain Length, GB - Grain breadth, PL - Panicle length and SPY - Single plant yield. Table5. Composition of ࡰࡰࡰࡰ૛૛૛૛ cluster for rice genotypes Cluster Number of genotypes Name of the genotypes 1. 38 TN 1, Co 50, IR 12L 104, IRRI 104, Co 39, IR DL 25 CA, ADT 37, IR 12L 115, IR BL 5M, BB 8, ASD 18,CR 1009, IR 12L 107, Uma, ASD 16, AD BIO 09518, IR 12L 342, Co 43, IR 72, TPS 4, ACK 12001, ADT 43, IR 12L 214, BPT 5204, PY 5, ACK 14004, LFR 293,IR 64, ADT 42, IR 11L 433, IR 50, IRRI C 134, IR 12L 138, ADT 48, White Sannam, Adukan, IR 11C 114 and IRRI 163. 2. 30 Kadaikannan, Kalakeri, Kitchadi samba, Karsamba, Veethiruppu, Kalakeri, Annada, Chinnapunjan, Jaya, Kuliyadichan, Thondi, Surakuruvai, Maranellu, Navarai, Anjali, Purple Puttu, Virendra, Sahbhagi Dhan, Rajalakshmi, Athira, Kurukot, Gowri, Kaivara Samba, Gowni, Swarna, Bharathi, Kayamma, White Ponni, Meikuruvai and Abhya. 3. 1 SR22B 4. 20 ACK 13005, ADT 39, Kullakar, Srilanka, Kalyani, Kavya, Jai Shree Ram, Kalyani, Sadabahar, ADT 46, IR 11C 465, CR Dhan 70, JGL 1798, IR 11T 193, Co 49, HH- Z17-Y16-Y3-Y2, JGL 348, Kuruvai Kalanjium, TP10008 and Namcheonbyeo. 5. 9 IR 12L 110, MDU 5, Co 45, ADT 41, PY 2, Co 51, Kalinga 3, Pusa Basmati and TP 10106. 6. 1 IR 10A 240 7. 1 Kottara Samba 8. 1 IR 20 9. 1 Vanaprabha
  • 8. International Journal of Trend in Scientific Research and Development (IJTSRD) ISSN: 2456-6470 @ IJTSRD | Available Online @ www.ijtsrd.com | Volume – 2 | Issue – 5 | Jul-Aug 2018 Page: 804 Cluster Number of genotypes Name of the genotypes 10. 1 Thooyamalli 11. 4 Mapillai Samba, Varapukudaichan, Mattai and Dhalaheera. 12. 1 Poonkar 13. 1 Kerala Gandhakasala 14. 1 Kattanur 15. 1 Seeraga Samba 16. 1 JGL 3855 17. 1 IR-BL-TAR-PI (Co) 18. 1 Krishna Hemavathi Table6. Average inter and intra cluster ࡰ૛ values for rice genotypes Clus ter 1. 2. 3. 4. 5. 6. 7. 8. 9. 10. 11. 12. 13. 14. 15. 16. 17. 18. 1. 20. 19 37. 28 22. 32 25. 85 32. 42 24. 99 36. 48 24. 85 32. 85 44. 28 48. 44 37. 32 38. 58 39. 88 36. 15 30. 26 30. 19 46. 16 2. 20. 35 33. 91 33 42. 07 45. 31 26. 52 34. 53 43. 1 26. 4 31. 22 28. 51 25. 73 30. 02 33. 06 44. 47 52. 81 34. 25 3. 0 19. 49 28. 92 33. 33 33. 78 31. 12 29. 05 33. 21 40. 95 39. 88 41. 48 43. 59 40. 38 25. 19 41. 98 46. 99 4. 24. 77 31. 39 34. 71 32. 99 31. 11 30. 73 35. 3 40. 22 38. 47 38. 8 41. 67 38. 81 29. 4 42. 21 44. 81 5. 27. 28 44. 58 45. 17 35. 8 34. 61 46. 42 45. 89 52. 46 45. 95 50. 62 41. 9 34. 56 45. 23 43. 04 6. 0 39. 66 29. 23 36. 15 53. 48 56. 69 33 46. 85 45. 82 44. 85 39. 09 28. 84 58. 43 7. 0 33. 55 40. 18 26. 36 32. 99 28. 77 35. 64 31. 5 38. 15 38. 57 50. 56 47. 65 8. 0 45. 65 47. 97 48. 57 34. 55 32. 75 28. 53 18. 82 41. 52 33. 11 34. 96 9. 0 40. 66 42. 6 46. 11 50. 92 57. 44 55. 63 25. 91 46. 32 59. 19 10. 0 25. 47 38. 42 39. 99 43. 86 48. 69 42. 2 63. 39 49. 04 11. 29. 02 43. 11 44. 08 49. 09 49. 06 49. 34 67. 45 46. 21 12. 0 31. 56 31. 55 39. 18 51. 13 49. 15 47. 42 13. 0 17. 78 23. 3 46. 76 44. 88 26. 62 14. 0 20. 58 49. 9 44. 35 33. 15 15. 0 49. 32 42. 6 21. 6 16. 0 38. 19 57. 43 17. 0 56. 25 18. 0 Intra cluster – Diagonal values, Inter cluster – Off diagonal values
  • 9. International Journal of Trend in Scientific Research and Development (IJTSRD) ISSN: 2456-6470 @ IJTSRD | Available Online @ www.ijtsrd.com | Volume – 2 | Issue – 5 | Jul-Aug 2018 Page: 805 Figure1. Graphical representation of genotypic and phenotypic covariance obtained for various traits 1. PH - Plant height 2. NPT - No of productive tillers 3. PL - Panicle length 4. SPY - Single plant yield 5. DFF - Days to 50% flowering 6. NGP - Number of filled grains per panicle 7. TGW - 1000 grain weight 8. GL - Grain Length 9. GB - Grain breadth Figure2. Graphical representation of heritability and genetic advance obtained for various traits 1. PH - Plant height 2. NPT - No of productive tillers 3. PL - Panicle length 4. SPY - Single plant yield 5. DFF - Days to 50% flowering 6. NGP - Number of filled grains per panicle 7. TGW - 1000 grain weight 8. GL - Grain Length 9. GB - Grain breadth 19.09 25.11 9.31 33.44 11.89 31.47 20.43 9.70 13.20 19.24 26.21 10.20 33.77 11.92 31.67 20.59 10.30 15.09 0.00 10.00 20.00 30.00 40.00 50.00 60.00 70.00 80.00 PH NPT PL SPY DFF NGP TGW GL GB GCV & PCV PCV GCV 98.50 91.80 83.40 98.00 99.40 98.70 98.50 88.80 76.60 39.04 49.55 17.52 68.20 24.42 64.40 41.78 18.84 23.80 0.00 20.00 40.00 60.00 80.00 100.00 120.00 PH NPT PL SPY DFF NGP TGW GL GB Heritability and Genetic Advance Heritability (%) G.A. (% m)
  • 10. International Journal of Trend in Scientific Research and Development (IJTSRD) ISSN: 2456 @ IJTSRD | Available Online @ www.ijtsrd.com Figure3. Graphical representation of Association among various traits 1. PH - Plant height 2. NPT - No of productive tillers 3. PL - Panicle length 4. SPY - Single plant yield 5. DFF - Days to 50% flowering -0.4 -0.2 0 0.2 0.4 0.6 0.8 1 Genotypic Correlation International Journal of Trend in Scientific Research and Development (IJTSRD) ISSN: 2456 @ IJTSRD | Available Online @ www.ijtsrd.com | Volume – 2 | Issue – 5 | Jul-Aug 2018 Figure3. Graphical representation of Association among various traits 6. NGP - Number of filled grains per panicle 7. TGW - 1000 grain weight 8. GL - Grain Length 9. GB - Grain breadth Genotypic Correlation International Journal of Trend in Scientific Research and Development (IJTSRD) ISSN: 2456-6470 Aug 2018 Page: 806 Figure3. Graphical representation of Association among various traits Number of filled grains per panicle PH NPT PL DF NGP 1000GW GL GB SPY