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Ibnu Sahidhir
Senior Aquaculture Engineer
Brackishwater Aquaculture Development Center Ujung Batee, Aceh
1
Microbial food web
Maintaining Healthy Shrimp Pondforforforfor
A Novel Approach
Microbial
Manipulating
Food Web
Main Questions
1. What is the significances of microbes in the pond ?
2. What is the microbial food web ?
3. How to manipulate bacterial food web for supporting shrimp health ?
4. How to manipulate phytoplankton food web for supporting shrimp
health ?
5. What is the right pond condition for better microbial food web to
flourish ?
CONSIDERING
THE ENERGY
Bacteria and phytoplankton
as basic of microbial food chain
Photosynthesis
Protozoa
Decomposition
Metazoa
pH
pH
I
The Significances of Microbes in the Pond
Microbial ServicesMicrobial ServicesMicrobial ServicesMicrobial Services
in Ponds
Detoxifying
wastes
• Absorbing and converting
NH3, H2S, CO2, malodor
Preventing
diseases
• Maintain
biodiversity
Providing
nutrition
• Vitamins,
immunostimulant
etc
0 50 100 150
Fertilizer
Soil quality
Broodstock feed
Antibiotics and disinfectant
Weather and health management
Seed
Larval feed
Growout feed
Alternative feed
Probiotic and bioremediation
My Personal Website Survey of Aquaculture Problem
10/28/2019 6
(www.sahidhir.com 2014)
Rank 1st : Probiotic
Number of People
Probiotics 15,200 entry
Prebiotics 4,430 entry
Synbiotics 1,600 entry
Postbiotics 33 entry
microbes
microbial food
microbes and
its food
Microbial metabolites
product
II
The Microbial Food Web
Microbial Community Succession from Organic Matter
Nannoflagellates
Organicpollution
Light intensity of tropical sun light 4000 kkal/m2/day
Microbial Community Succession from Inorganic Matter
Phytoplankton
Free ciliates
Attached ciliates
Copepod
Rotifer
Inorganicpollution
Attached
Dispersed
Flocculated
Settled
Distribution of Microbes
Foam and scum
(Wang et al., 2014)
METHODS
Finding
stuck in
food
chain
Preparing
healthy
basic of the
pyramides
Helping
the
grazer
Controlling
the
environment
Day 1st:
Heterotrophic bacteria decompose organic matter
Day 7th
Microalgae grows after inorganic mineral accumulated
Filamentous bacteria as a skeleton of floc
Young Floc
Pennales Diatom in Floc
Attached Ciliata in Old Floc
Ciliates-Rotifer-Gastrotrich as Floc Grazer
Bakteri 0,1-1 um
Protozoa 0,5-20 um
Rotifer 100-300 um
Organisme bersel banyak yang paling sederhana
Gastrotrichs
Crustacean and Nematodes (300-1500 um)
Microbial
Food Web
in ERAS
Organic matter Solid dissolved
Bacteria
Organic
Anorganic Phytoplankton
Micro
Meso
Protozoa
Nanno
Micro
Macro
Free swimming
Crawling
Attached
Contractile
Non-contractile
swimming
floc
attached
Rotifers
Nematods
Copepods
Insects
(mosq larvae,
chironomus)
Ciliata
(70%)
Melosira, Navicula
Bio-agitation and coprophagy
Predation
CO2 in
CO2 Out
Biomass decreases
Biomass increases
Biomass
Pool
CO2 in
CO2 Out
Biomass decreases
Biomass increases
Simplifying the Concept
Indoor Outdoor
Floc Volume in Outdoor is Higher than Indoor
3
10
0,00
2,00
4,00
6,00
8,00
10,00
12,00
14,00
weight
(gram)
Indoor
Outdoor
Nitrite-N
Total Ammonia-N
Nitrate-N
0
5
10
15
20
25
30
35
0
0,05
0,1
0,15
0,2
0,25
0,3
0 8 12 15 19 26 28
Days
Nitrate-N
(mg/l)
TAN dan Nitrite-N
(mg/l)
A Complete Ammonia Oxidation Pattern (COMMAMOX by Nitrospira sp)
When microbial food web is running well, No Worries about Nutrient Cycles
Effect of ciliated protozoa on the activated sludge quality
Effluent analysis Without ciliates With ciliates
Bacteria (millions/ml) 106-160 1-9
BOD (mg/l) 53-70 7-24
Organic nitrogen (mg/l) 14-21 7-10
Suspended solids (mg/l) 86-118 26-34
MANIPULATING THE MICROBIAL FOOD WEB
Finding
stuck in
food
chain
Preparing
healthy
basic of the
pyramides
Helping
the
grazer
Controlling
the
environment
III
Manipulating Bacterial Food Web
Microbial food chain become stuck because of
filamentous microbes
23 Clade of Vibrio
Deadly AHPND Vibrio
transfer the plasmid
to Orientalis clade (V. punensis)
(Clade: Sawabe et al, 2013)
(AHPND: Restrepo, 2018)
(Dworkin et al, 2006: The prokaryotes VI)Physiological Profile of Vibrios
Natural microbial community
Cell
Metabolites
Stimulate protozoa
Stimulate floc forming bacteria
Reduce total bacteria
Reduce
pathogenic bacteria
probiotic
postbiotic
Organic acid and ethanol
Heterotrophic nannoflagellates
• induce polyhydroxyalkanoates
• Polyphosphate accumulating bacteria
Postbiotic Strategy of Heterofermentative Microbes
Classical RABAL (Yeast and Lactic Acid Bacteria) of Heterofermentative Natural Strain
SelfSelfSelfSelf----purification of waterpurification of waterpurification of waterpurification of water
4 days water maturation
Lavilla-Pitogo CR, Albright LJ, Paner MG (1998)
Effect of ciliated protozoa on the activated sludge quality
Effluent analysis Without ciliates With ciliates
Bacteria (millions/ml) 106-160 1-9
BOD (mg/l) 53-70 7-24
Organic nitrogen (mg/l) 14-21 7-10
Suspended solids (mg/l) 86-118 26-34
Homofermentative (hexose) Heterofermentative (hexose & pentose)
Lactobacillus acidophilus, L casei, L. plantarum,
L. kefiranofaciens, L. kefirgranum
Lactobacillus fermentum, L. brevis, L. kimchii, L.
Sakei, L.
Lactococcus lactis, Lactococcus plantarum Leuconostoc kimchii, L. Lactis, L. mesenteroides
Paralactobacillus selangorensis Carnobacterium divergens
Pediococcus acidilactici Oenococcus oeni
Vagococcus fluvialis Weisella kimchii, W. koreensis
Lactic Acid Bacteria
(Jay, 2005; Dworkin et al, 2006: The prokaryotes IV)
Polyphosphate Accumulating Microbes after PHA Formation
(Yuan, 2012)
(Janssen, 2012)
Microbial Floc:
a Rain Forest in the Dessert of Shrimp Faming
• Site of biodiversity
• Nitrifiers shelter
• P accumulators shelter
• Benthic diatom shelter
• Maintain safe decomposition
IV
Manipulating Microalgal Food Web
Silicate in seawater 8 ppm
Si (20% silicate) 1,6 ppm
N (5x Si) 8 ppm
Feed protein 36%
N protein 16%
N secretion 70%
Total N waste 4%
Feed 198 ppm
Shrimp size (150 ind/m3) 1,3 gram
Shrimp size (300 ind/m3) 0,7 gram
Predicting when Si used up
Postbiotics prevents microalgal collapse by slowing population growth
Big size of microalgae makes microbial food chain become stuck
• Silicon is limiting nutrient
• Diatom tolerance to defficiency is 20%, thin frustule
• After 10 days 40% of organic Si is mineralized
• Size of Diatom influence mineralization of organic Si
Asexual Sexual
Sexual mode on when resources is depleted
Binary fission Oogonium Spermatogonium Engagement
ZigoteFertilization
Cyclotella menegheniana
Protozoa grazing bacteria in scum
• Exopolymeric substances (green)
(carbohydrates)
• Abundant when nutrient (NP) limited
EPS of Spirulina
Lack of protozoa in anaerobic sediment
Filamentous Bacteria in Upper Layer Anaerobic Sediment
Sulfate 2700 ppm
Sulfide potential (33% of sulfate) 900 ppm
Sulfide toxicity 0,2 ppm
Killing area 4500 m3
Sulfate = 2,7 ppt
Macro Anion Disaster in Anaerobic Environment
Before and After
Periphyton Feeder
Comes
Tilapia grazing
prevent mirobial food
chain become stuck
V
Providing Excellent Environment
for Microbial Food Web to Flourish
A Simplified Process in Traditional Pond:
Nothing can be Controlled
Thinking Like
Bioreactor
• Control DO (>4 ppm) and pH (7,8-8,6)
• Harvest the microbes regularly by
siphoning
Ca/Mg/K = 1/3,5/1 = 2 ppt
Macro Cation
Current Water Management: Horisontal vs Vertical
Current and aeration make different storyCurrent and aeration make different storyCurrent and aeration make different storyCurrent and aeration make different story
No water exchange
for 2 months
TAN 0,08 ppm
Nitrite 0,004 ppm
Nitrate 11,9 ppm
Phosphate 0,13 ppm
TVC 230 cfu/ml
82%
86%
92%
96%
80%
82%
84%
86%
88%
90%
92%
94%
96%
98%
100%
0 50 100 150
Dose of Postbiotics (ppm)
Survival Rate in Nursery
10/28/2019 Indonesian Aquaculture 2018, Jakarta, 28-30 November 2018 64
0,084
0,095
0,098
0,138
0,070
0,080
0,090
0,100
0,110
0,120
0,130
0,140
0,150
0 50 100 150
Weight in Nursery
(gram)
Dose of Postbiotics (ppm)
10/28/2019 Indonesian Aquaculture 2018, Jakarta, 28-30 November 2018 65
2,5
2,1
1,9
1,3
1,10
1,30
1,50
1,70
1,90
2,10
2,30
2,50
0 50 100 150
FCR in Nursery
Dose of Postbiotics (ppm)
10/28/2019 Indonesian Aquaculture 2018, Jakarta, 28-30 November 2018 66
10/28/2019 Indonesian Aquaculture 2018, Jakarta, 28-30 November 2018 67
Partial Harvest 0.5-1 kg/m3 in Trial Tanks
1,1
5,1
4,4
7,0
1 2 3 4 5 6 7
800
600
Area 800 m2
Cycles 3 siklus/tahun
Tanks 10 @50 m3
DOC 78 days
Density 240 ind/m2
Biomassa 4 kg/m3
ADG 0,23 gram/day
SR >90%
FCR 1,1-1,2
Size 50-70 ind/kg
Shrimp Profile Production in Tanks
REMINDING THE LINE
Finding
stuck in
food
chain
Preparing
healthy
basic of the
pyramides
Helping
the
grazer
Controlling
the
environment
SHRIMPING
Let’s

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