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Asia-Pacific Geant4 Workshop
  and Training Course 2009
7-12 December 2009 @ Tsukuba International Congress Center (Epochal), Tsukuba, Japan


          One Day Training Course
       http://www-geant4.kek.jp/g4ws09/training.php

   All materials in this training course are designed for non native English
   speakers & Geant4 novice users so that slides are described as verbose as
   possible. Consequently, participants can study by themselves even after
   this course.
                                                         “Slides as a Textbook”
                         Go Iwai, KEK/CRC
                        go.iwai@kek.jp
Safety First!
                     We are here Lv4

• Emergency exits
  and assembly
  point
• Check your
  evacuation route
• Don’t use the lift
  in an emergency


  December 7, 2009                     APG4WS2009   2
Welcome to Earthquake Country
• Be aware of exits in your building
• Fire or other emergency evacuation
      – Follow building residents out of building to the assembly area
• Earthquake
      – Remain in building: Duck, cover, and hold position until shaking stops
      – Evacuate building to assembly area outside (follow others)
      – Stay away from windows, downed power lines
• In the event of an emergency
      – Dial 110 for PD, or
      – Dial 119 for Fires and Ambulance
      – Provide address
            • Congress Centre (Epochal): 2-20-3,Takezono,Tsukuba
            • OKURA FRONTIER HOTELTSUKUBA EPOCHAL: 2-20-1,Takezono, Tsukuba
            • Daiwa Roynet Hotel: 1-5-7 Azuma, Tsukuba


December 7, 2009                      APG4WS2009                                 3
Networking
• WiFi
      – IEEE 802.11b or 802.11g compliant adaptors should
        be accepted
      – SSID: tsukuba04
      – WEP: Open (Not excypted)
• Wired connection
      – Limited number of sockets: ~16
      – Supplied only in front area of this room
      – If you need wired connection, please let us know
• Let us know if you have any difficulties or
  questions
December 7, 2009             APG4WS2009                     4
Plan for the week
• Talks and practical
      – Geant4 installation (this course)
      – Others are shown in next a few slides
• Discussion
      – Before and after each module




5
December 7, 2009           APG4WS2009
Tuesday
•   Introduction to Geant4
•   History of Geant4
•   Upcoming release Geant4 version 9.3

•   Don’t miss the reception party at Incarose 6:30-8:30PM!




December 7, 2009                      APG4WS2009              6
Wednesday
•   Basic Introduction & structure of Geant4 (in Lecture 1)
•   Introduction to Hadronic & EM Physics (in Lecture 1)
•   More Physics (in Lecture II-1)
•   Still more Physics mainly focused on Medicals (in Lecture II-2)

• Working session feedback report from users




December 7, 2009                 APG4WS2009                           7
Thursday
• Geometry Placement, Physics and Primary
  Particles (Lecture III)
• User Interface, Materials and Scoring (Lecture IV)
• Working session feedback report from users




December 7, 2009       APG4WS2009                      8
Friday
• Visualization, Advanced geometry placement, and Detector
  sensitivity (Lecture V)
• Documentation and discussion with your insights we can improve…
  (Lecture VI)
• Follow up for this course (150min)




                                    We can follow up on Friday afternoon if
                                    anything spill out of this course



December 7, 2009             APG4WS2009                                       9
Agenda Today
Time               Duration   Contents
13:30 - 14:30      60min      Introduction
14:30 - 14:45      15min      Break
14:45 - 15:45      60min      Hands-on work
15:45 - 16:00      15min      Break
16:00 - 16:30      30min      Installation & Tips
16:30 – 18:00      90min      QA & comments




December 7, 2009                      APG4WS2009    10
Aims in this session
• EVERY participants can get started in Geant4
• EVERY participants can install Geant4 by
  themselves
• EVERY participants can proceed next step
      – i.e. application development!




December 7, 2009           APG4WS2009            11
Not aims in this session
• I don’t aim…
• Advanced technical matter
      –   How to create materials and geometries in Geant4
      –   How to inject particles
      –   How to define own physics process
      –   And so on…
• But question is welcome of course!
• I try to profile your questions or difficulties (we
  have!) and then, allocate appropriate persons to
  them

December 7, 2009              APG4WS2009                     12
Starting Point of the Workshop
• Tips to make our workshop successfull
      – To make ourselves comfortable
      – To be relax during the workshop


• Tsukuba is designed as science city…
• We don’t have so many choices
• A few personal recommendation can be
  shown in next a few slides
December 7, 2009           APG4WS2009     13
http://www-geant4.kek.jp/g4ws09/access.php
Google map may help you

                              Lunch

                                       CASA Tsukuba Epochal
                                       ~1,000JPY
                                       Direct access through concourse




                                                We are here




   December 7, 2009             APG4WS2009                               14
http://www-geant4.kek.jp/g4ws09/access.php
Google map may help you

                              Lunch


                                             KFC
                                             ~600JPY
                                             500m away 12 min by walk




  Ton-Q
                                                             We are here
  ~2,000JPY
  600m away 15 min by walk

   December 7, 2009             APG4WS2009                                 15
http://www-geant4.kek.jp/g4ws09/access.php
Google map may help you

                                Dinner
   Sushi: Kintaro                  Sushi: Yagura
   ~5,000JPY                       ~6,000JPY                OKURA FRONTIER
                                                            HOTEL TSUKUBA
                                BBQ: Shu-Yen                EPOCHAL
                                ~5,000JPY



                                          200m
   J-Pub: Tairyo-Maru
   ~5,000JPY (depend
                           Reception Party at      Many restaurant should
   on quantity & quality                           be found basement of
                           Incarose
   of your drink!)                                 DaysTown Tsukuba
                           18:30-20:30 on Tue


                                                                   We are here

   December 7, 2009                 APG4WS2009                              16
http://www-geant4.kek.jp/g4ws09/access.php
Google map may help you

                            Shopping
  Daiwa Roynet Hotel


                                             Q’t Shopping Center


                                                       OKURA FRONTIER
                                                       HOTEL TSUKUBA
                                                       EPOCHAL
    Seibu Shopping Center




                                      500m


   December 7, 2009             APG4WS2009                              17
http://www-geant4.kek.jp/g4ws09/access.php
Google map may help you

                                  Shopping
   IIAS Tsukuba: Shopping moll

                                                   Kenkyu-Gakuen
                                                   Station next to
                                                   Tsukuba Sta.


                                                 2min next station




          ~50m walking distance




   December 7, 2009                 APG4WS2009                       18
Who am I?
My name                  Go Iwai
Where I am working       Computing Research Center
                         KEK, Tsukuba
My experience in         10 years! since beta-release when I was a MC students!
Geant4                   I am not wizard… Actually, same with most of you.
Platform today           Scientific Linux 5.4 x86_64 on VMware
                         Windows Vista x64 as host machine
Platform in usual work   OpenSUSE on physical box as desktop machine
                         Most of development are on remote resources
What I aim in this       It’s clear: I am hoping that EVERY participants can get started in
course                   Geant4, can install Geant4 by themselves, can proceed next step, i.e.
                         application development!
What community I am      My original background was HEP, nowadays I am getting involved in
involved in              distributed computing science, e.g. LCG.
Goal in my research      My main responsibility is to design/coordinate/implement national
                         computing resources for a general purpose infrastructure and to show
December 7, 2009         my community people how to utilize this with their legacy resources. 19
                                        APG4WS2009
Who’s here!?
Please give us your…
 • Name
 • Where you work
 • Your experience in Geant4
       – Enough for rough estimation, e.g. 1day? 1week? 1year?
 • Platform
       – Today?
       – In usual work?
 • What you aim in this course
 • What community/experiment you are involved in
       – And role in your community/experiment
 • Goal in your research or work

 December 7, 2009                APG4WS2009                      20
Break before Hands-on works?

   If you are not yet ready to start
 hands-on works, please let us know!
      I have not yet connected the Internet!
      I have not yet downloaded VM images!
      I have not yet installed VMware!
      I have not yet….
      I can not…
Seat Arrangement
Each Group consists of ~4 members
                                We organize based on international

Build up Team                   collaboration!
                                                       Front of Room


Entrance door




                   Team H




                                     Team D

                                              Team B
Entrance door               Team F
                   Team G




                                              Team A
                                     Team C
                            Team E




December 7, 2009   APG4WS2009                                          23
Hands-on

60-90 min
Introduction
• As the admin on Grid computing at KEK
      – Keep up-to-date with the latest software on WNs as well as local
        cluster machines
• A few software is locally packaged out RPM
      – Including Geant4-related software.
      – Great improvement on daily duties.
• RPMed Geant4 is useful for
      – Administrators
      – Application developers
      – Lectures in tutorial courses
• Scope of presentation
      – Sharing experiences among those who have relevant activities
      – Help for users who have a difficulty of its long installation time or
        keeping up-to-date


December 7, 2009                       APG4WS2009                               25
Technology Choice of Package Management
                    APT vs. YUM
                                                                                        * Perhaps reflecting my bias
        Pros                                                           Cons
APT     Wider support across distributions (since its a Debian tool)   Not a base part of the FC package set.
                                                                       Perhaps a slightly higher learning curve to use effectively.
        Many users may be more familiar with APT rather than           Harder to roll my own repository
        YUM
                                                                       EGEE developer team will stop providing apt repository in
                                                                       future
YUM     Compatible with many update tools, e.g. up2date, apt and       Few graphical update/management tool.
        Yast
        EGEE developer team will possibly support only YUM on
        SL4 in future
        Comes with Fedora by default, widely supported by many
        RPM repositories.
        Fairly easy to roll my own repository
        Simple and powerful user interface


 • Neither found significant advantage nor disadvantage in APT/YUM
 • It seems using YUM is better way
       – As the administrator on Grid
December 7, 2009                                         APG4WS2009                                                              26
Quicker Installation
• Just 1min ready to go
  Geant4
      – If network
        performance is
        reasonable 
• Easy to keep up-to-
  date
      – No more waste time
        for installation


   http://repo.cc.kek.jp/
December 7, 2009             APG4WS2009   27
Contents of Packages
Package            Content/Comment
geant4             Dynamic libraries
                   e.g.: libG4FR.so, libG4OpenGL.so, libG4RayTracer.so, ...
geant4-devel       Static libraries , header files and gmk files
                   e.g.: libG4FR.a, libG4OpenGL.a, libG4RayTracer.a, ..., G4RunManager.hh,




                                                                                                                Stack of geant4
                   G4RunManagerKernel.hh, ..., common.gmk, binmake.gmk, ...
geant4-source      Source tree
                   i.e.: All files placed in $G4INSTALL/source
clhep              Dynamic libraries
                   e.g.: libCLHEP-Random-2.0.4.0.so, libCLHEP.so, ...
clhep-devel        Static libraries and header files
                   e.g.: libCLHEP-Random-2.0.4.0.so, libCLHEP.so, ..., JamesRandom.h, ThreeVector.h, ...
geant4-demo        Executable examples




                                                                                                                Stack of geant4-data
                   e.g.: exampleN01, exampleN02, ..., desktop icon, ...
geant4-data        Pseudo package, just dependencies are held
data_G4NDL         ASCII data files
data_G4EMLOW       All packages depend on geant4-data pseudo package.
data_G4ABLA
data_Photon...
data_Radio...


December 7, 2009                                   APG4WS2009                                              28
Supported Distros and Architecture
              As of Dec. 2009
• New: ready for Scientific Linux 5!

• Redhat Enterprise Linux clones (SL, CentOS,
  and SLC) both version 4 and 5
      – Both architectures i386 and x86_64




December 7, 2009          APG4WS2009            29
It's really easy, 10 seconds to setup
                      to look up repository here.
                      If your platform is SL5, URL should
                      be addressed:
                      http://repo.cc.kek.jp/SL5/
                      kek.repo




December 7, 2009   APG4WS2009                          30
Contents of a repo file “kek.repo”
                   Enabled for two stacks geant4 and
                   geant4-data by default




December 7, 2009    APG4WS2009                          31
After placing a repo file in
                   /etc/yum.repos.d, just execute “yum
                   install geant4-demo” to install
                   geant4-demo package




December 7, 2009         APG4WS2009                  32
All dependencies for a geant4-demo
                   package are resolved by yum before staring
                   to install geant4-demo.
                   clhep, geant4 and geant4-data packages are
                   installed in this example.




December 7, 2009        APG4WS2009                        33
Tips: “yum -y install demo” to skip here.




December 7, 2009                  APG4WS2009                   34
To make sure to set up your
         environment valuable, logout
              here and login again




December 7, 2009     APG4WS2009         35
After installing geant4-demo, you
                   should find short cut for a demo
                   application in application menu list.




December 7, 2009            APG4WS2009                     36
You can find an icon on your desktop also




December 7, 2009            APG4WS2009                         37
Open up terminal
                                window and control
                                window by double
                                clicking the desktop icon.




December 7, 2009   APG4WS2009                                38
Selectable tab N01-N07




December 7, 2009                APG4WS2009   39
Click “Quit” to terminate a demo

December 7, 2009       APG4WS2009                     40
$ rpm --query --list geant4
                   geant4 package provides only shared
                   libraries, it’s enough to work applications.




December 7, 2009      APG4WS2009                           41
$ rpm --query --list clhep
                   clhep package also provides only shared
                   libraries.




December 7, 2009      APG4WS2009                        42
Setup
• It's really easy, 10 seconds to setup to look up
  this repository here.

      # cd /etc/yum.repos.d
      # wget http://repo.cc.kek.jp/SL4/kek.repo


  If you are working on SL5:
      # cd /etc/yum.repos.d
      # wget http://repo.cc.kek.jp/SL5/kek.repo



December 7, 2009          APG4WS2009                 43
Geant4 Installation
                       End-Level Users
• This “geant4” package provides only shared libraries.
      – Basically it’s sufficient to run an application.
      – Neither header files nor static libraries are inclusive.
        (install geant4-devel package if necessary)
      – Useful for cloning too many nodes.
• A package “geant4-data” is ascii data set of Geant4
      – Pseudo package, provides only dependencies for actual
        data files.
            • i.e. data_G4ABLA, data_G4EMLOW, data_G4NDL,
              data_PhotonEvaporation and data_RadioactiveDecay

      # yum install geant4
      # yum install geant4-data

December 7, 2009                   APG4WS2009                      44
Novice example N01
• Fixed geometry
   – Ar gas mother volume with Al cylinder and Pb
     block with Al slices


• Incident particle is a geantino
   – no physics interactions
   – only the transportation process is enabled

• Hard coded batch job and verbosity
Novice Example N03
    •   Sampling calorimeter with layers of Pb absorber and
        liquid Ar detection gaps (replicas)

    •   Exhaustive material definitions

    •   Command interface

    •   Randomization of incident beam

    •   All EM processes + decay, with separate production
        cuts for γ, e+, e-

    •   Detector response: E deposit, track length in absorber
        and gap

    •   Visualization tutorial

    •   Random number seed handling
Novie Example N02
• Pb target, Xe gas chambers (parameterized
  volumes)

• All EM processes + decay including charged
  leptons and charged hadrons

• Detector response
   – Trajectories and chamber hit collections may
     be stored

• Visualization of detector and event

• Command interface introduced
   – Can change target, chamber materials,
     magnetic field, incident particle type,
     momentum, etc. at run time
Novie Example N04
• Simplified collider detector
   – all kinds of volume definitions

• Magnetic field

• PYTHIA primary event generator
   – Higgs decay by Z0, lepton pairs

• Packaged physics list (QGSP)

• Event filtering by using stacking
  mechanism
Novice Example N05
• Fast simulation with parameterized showers
   – EM showers (derived from G4VFastSimulationModel)
   – Pion showers (for illustration only – not used)

• EM physics only
   – Use of G4FastSimulationManagerProcess

• Simplified collider detector geometry
   – Drift chamber
   – EM, hadronic calorimeter
   – Ghost volume
Novice Example N06
• Water Cerenkov detector with air
  “bubble”

• Materials
   – Specification of optical properties
   – Specification of scintillation spectra

• Physics
   – Optical processes
   – Generation of Cerenkov radiation, energy
     loss collected to produce scintillation
Novice Example N07
• 3 simplified sandwich calorimeters (Pb, Al,
  Ar)

• Cylindrical ghost volume for scoring

• Run-based (as opposed to event-based)
  hit accumulation

• Changing geometries without rebuilding
  world

• Setting different secondary production
  cuts for each calorimeter using G4Region
Make Your Application!




December 7, 2009            APG4WS2009      52
Geant4 Installation
                   Application Developers
• A package “geant4-devel” is necessary if you
  as the application developer, want header files
  or static libraries.
• The “geant4-source” may be useful as
  references or debugging.

      # yum install geant4-devel




December 7, 2009            APG4WS2009          53
External Tools for Visualization
• A package “dawn” and “vrmlview” is
  necessary if you would like to visualize your
  simulation results graphically.



      # yum install vrmlview dawn




December 7, 2009        APG4WS2009                54
Build & Run
$ wget http://www-geant4.kek.jp/g4users/g4tut07/download/exercise-
2.tar.gz
$ tar zxvf exercise-2.tar.gz
$ cd exercise-2
$ ls
GNUmakefile ex02.cc gun.mac include/ src/ vis.mac vrml.mac


$ make
...

$ ./bin/Linux-g++/ex02
...

ex02(Idle)[/]:/control/execute vis.mac



                                                                55
Advanced Hands-on

              Try this if you could finish everything
                   earlier and getting boring 



December 7, 2009              APG4WS2009                56
Rotate Tube
• Edit DetectorConstruction class
      – src/DetectorDescription.cc
G4RotationMatrix* rotM= new G4RotationMatrix;
 rotM-> rotateY(-90.*deg);
 new G4PVPlacement(rotM, G4ThreeVector(),
                   tubeLV, "tube", boxLV,
                   false, 0);




December 7, 2009             APG4WS2009         57
Volume Placement
• Place 6 volumes 45 degree rotated
  about an z-axis
• Edit DetectorConstruction class
 const G4double dphi= 45.*deg;

  for(G4int i=0; i<6; i++) { // check rotation directioon!!
    G4ThreeVector armVec= G4ThreeVector(30.*cm, 0., 0.);
    G4RotationMatrix armRot= G4RotationMatrix();

      armVec.rotateZ(dphi*i);
      armRot.rotateZ(dphi*i);

      new G4PVPlacement(G4Transform3D(armRot, armVec),
                        boxLV, "box", worldLV,
                        false, i); // copy# should be unique.
  }
 December 7, 2009                APG4WS2009                     58
Beam On!




$ ./bin/Linux-g++/ex02
...

ex02(Idle)[/]:/control/execute gun.mac
ex02(Idle)[/]:/control/execute vis.mac
ex02(Idle)[/]:/run/beamOn




 December 7, 2009              APG4WS2009   59
Let’s have a break!
Geant4 Installation Guide
If you can understand a SPEC file in
                SRPM…
  • It is the best practical example to install
    Geant4
        – http://repo.cc.kek.jp/SL4/geant4/SRPMS/
        – http://repo.cc.kek.jp/SL5/geant4/SRPMS/


To understand dependency in “BuildRequires”
BuildRequires: mesa-libGL-devel, mesa-libGLU-devel
BuildRequires: xorg-x11-proto-devel, openmotif-devel
BuildRequires: xerces-c-devel


                               Everything in a SPEC file!
  December 7, 2009                 APG4WS2009               62
To understand build procedure in “%build” section
#...snip
export G4SYSTEM=%{g4system}
export G4INSTALL=%{_builddir}/%{name}.%{version}
export CLHEP_BASE_DIR=/opt/clhep
export G4LIB_BUILD_GDML=1
export XERCESCROOT=/usr
export G4VIS_BUILD_DAWN_DRIVER=1
export G4VIS_BUILD_VRML_DRIVER=1
export G4VIS_BUILD_RAYTRACERX_DRIVER=1
export G4VIS_BUILD_OPENGLX_DRIVER=1
export G4VIS_BUILD_OPENGLXM_DRIVER=1
cd $G4INSTALL/source
%{__make} %{?_smp_mflags}

export G4LIB_BUILD_SHARED=1
export G4LIB=$G4INSTALL/slib
export G4TMP=$G4INSTALL/tmp-slib
cd $G4INSTALL/source                                But some magic
%{__make} %{?_smp_mflags}                           words might
%{__make} global                                    discourage us 
%{__make} includes
  December 7, 2009                   APG4WS2009                       63
http://geant4.slac.stanford.edu/tut
       orial/installation/Geant4.9.2.p02/L
       inux/Geant4_9_2_p02_Linux_Installat
       ion.htm


                Joseph’s Installation Note
Note that we assume to install everything into your $HOME/geant4 in your home
directory. This means that you don’t need any special privilege.



                             Thank Joseph!
       Mac and Windows also available, find here:
       http://geant4.slac.stanford.edu/SLACTutorial09/Agenda.html


 December 7, 2009                    APG4WS2009                                 64
What are the two pieces of software
     required for building Geant4?
• gcc 3.4.6 (for SLC4 or RedHat 4) or gcc 4.2.1 (for SLC5 or RedHat 5):
  gcc is the compiler that is recommended for Geant4 on
  Linux. Users have also had success with some other gcc versions,
  but there is no guarantee. To check your version, type: gcc –v.

• CLHEP: CLHEP is a set of base libraries that have long provided great
  functionality for the particle physics community. They provide
  things like matrix manipulations, four-vector tools and lists of
  particle properties. The Geant4 collaboration has chosen to use
  these libraries rather than re-invent these wheels. Please note that
  while CLHEP and Geant4 both come out of the particle physics
  communities, they are separate products - the Geant4 collaboration
  is not responsible for maintenance, distribution or documentation
  of CLHEP.



December 7, 2009               APG4WS2009                            65
Getting and Installing CLHEP
• Go to the CLHEP source download page:
• http://proj-clhep.web.cern.ch/proj-
  clhep/DISTRIBUTION/clhep.html
• From the "Source" section near the bottom of
  the page, select "clhep-2.0.4.2.tgz“
• which corresponds to:
• http://proj-clhep.web.cern.ch/proj-
  clhep/DISTRIBUTION/distributions/clhep-
  2.0.4.2.tgz
December 7, 2009       APG4WS2009            66
$ cd /tmp
$ wget http://proj-clhep.web.cern.ch/proj-
clhep/DISTRIBUTION/distributions/clhep-2.0.4.2.tgz

And then,

$ tar -zxvf clhep-2.0.4.2.tgz

The unpacking process will begin, starting with:

2.0.4.2/
2.0.4.2/CLHEP/
2.0.4.2/CLHEP/CVS/
2.0.4.2/CLHEP/CVS/Root
2.0.4.2/CLHEP/CVS/Repository

And ending with:
2.0.4.2/CLHEP/Vector/configure
2.0.4.2/CLHEP/config.guess
2.0.4.2/CLHEP/config.sub
2.0.4.2/CLHEP/Makefile.in
2.0.4.2/CLHEP/configure
 December 7, 2009                APG4WS2009          67
Now navigate into the unpacked directory and begin the
configuration process.
$ cd /tmp/2.0.4.2/CLHEP
$ ./configure --prefix $HOME/geant4/clhep

You should get a response that starts with:
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
checking target system type... i686-pc-linux-gnu
checking for a BSD-compatible install... /usr/bin/install –c
checking whether build environment is sane... Yes

And ends with:
config.status:      creating test/exctest4.sh
config.status:      creating test/exctestNothrow.sh
config.status:      creating test/excDblThrow.sh
config.status:      creating Exceptions/defs.h
config.status:      executing depfiles commands$ cd $HOME/CLHEP/



 December 7, 2009                  APG4WS2009                      68
For the following, be sure to type make rather than gmake. It can be very hard to
remember which of these to type. One some Linux systems, they may even do the exact
same thing, but not always. So for your CLHEP and Geant4 work, don't use gmake.

Run the build process:

$ make

You should get a response that starts with:
Making all in Units
make[1]: Entering directory
`/afs/slac.stanford.edu/u/ey/perl/CLHEP/2.0.4.2/CLHEP/Units‘
Making all in Units
make[2]: Entering directory
`/afs/slac.stanford.edu/u/ey/perl/CLHEP/2.0.4.2/CLHEP/Units/Units‘
make all-am

And ends with:
rm -f libCLHEP-2.0.4.2.so
liblist=`./getObjectList -shared Units Vector Evaluator GenericFunctions Geometry
Random Matrix RandomObjects RefCount Cast Exceptions`; ¥
g++ -O -ansi -pedantic -Wall -D_GNU_SOURCE -g -O2   -o libCLHEP-2.0.4.2.so -shared -
Wl,-soname,libCLHEP-2.0.4.2.so $liblist –o libCLHEP-2.0.4.2.so
./build-header
make[1]: Leaving directory `/afs/slac.stanford.edu/u/ey/perl/CLHEP/2.0.4.2/CLHEP'Now
navigate into the unpacked directory and begin the configuration process.

$ make install

  December 7, 2009                    APG4WS2009                                  69
Dynamic or Static?
 •   After completing to install CLHEP, you can find libCLHEP-2.0.4.2.so and libCLHEP-2.0.4.2.a in
     $HOME/clhep/lib directory.
 •   By default, liker try to link dynamic library, i.e. libCLHEP-2.0.4.2.so
       –   In this case, you should set LD_LIBRARY_PATH as $HOME/clhep/lib
       –   Personally, I don’t recommend this
 •   If you want to use a static library, i.e. libCLHEP-2.0.4.2.a, follow this instruction to remove dynamic
     library here:
$ cd $HOME/geant4/clhep/lib
$ ls
libCLHEP-2.0.4.2.a                                  libCLHEP-Matrix-2.0.4.2.a
libCLHEP-2.0.4.2.so*                                libCLHEP-Matrix-2.0.4.2.so*
libCLHEP-Cast-2.0.4.2.a                             libCLHEP-Random-2.0.4.2.a
libCLHEP-Cast-2.0.4.2.so*                           libCLHEP-Random-2.0.4.2.so*
libCLHEP-Evaluator-2.0.4.2.a                        libCLHEP-RandomObjects-2.0.4.2.a
libCLHEP-Evaluator-2.0.4.2.so*                      libCLHEP-RandomObjects-2.0.4.2.so*
libCLHEP-Exceptions-2.0.4.2.a                       libCLHEP-RefCount-2.0.4.2.a
libCLHEP-Exceptions-2.0.4.2.so*                     libCLHEP-RefCount-2.0.4.2.so*
libCLHEP-GenericFunctions-2.0.4.2.a                 libCLHEP-Vector-2.0.4.2.a
libCLHEP-GenericFunctions-2.0.4.2.so*               libCLHEP-Vector-2.0.4.2.so*
libCLHEP-Geometry-2.0.4.2.a                         libCLHEP.a@
libCLHEP-Geometry-2.0.4.2.so*                       libCLHEP.so@
$ rm libCLHEP.so
 December 7, 2009                                  APG4WS2009                                              70
Getting Geant4
• From the top of the Geant4 home page:
      – http://geant4.web.cern.ch/geant4/
• Select "Download" from near the top right
  corner of the page.
• Select "Unix tar format, compressed using
  gzip"
• which corresponds to:
      – http://geant4.web.cern.ch/geant4/support/source
        /geant4.9.2.p02.tar.gz

December 7, 2009          APG4WS2009                  71
Navigate to this directory and unpack the file:

$ cd $HOME/geant4
$ wget
http://geant4.web.cern.ch/geant4/support/source/geant4.9.2.p02.tar.
gz
$ tar zxvf geant4.9.2.p02.tar.gz

The unpacking process will begin, starting with:
geant4.9.2.p02/
geant4.9.2.p02/ReleaseNotes/
geant4.9.2.p02/ReleaseNotes/Beta4.9.2-1.txt
geant4.9.2.p02/ReleaseNotes/Patch4.4.0-1.txt
geant4.9.2.p02/ReleaseNotes/Patch4.4.0-2.txt

And ending with:
geant4.9.2.p02/source/visualization/modeling/src/G4VModel.cc
geant4.9.2.p02/source/visualization/modeling/src/G4VTrajectoryModel
.cc
geant4.9.2.p02/source/visualization/modeling/src/G4VisTrajContext.c
c
geant4.9.2.p02/source/GNUmakefile
 December 7, 2009             APG4WS2009                        72
Getting Data Files
• Depending on the physics of your particular
  application, you may need to install additional
  data files. These data files can be downloaded
  separately from the Geant4 source
  distribution page (the same place where you
  got Geant4 itself).
• Create a new folder within ~/geant4 to hold
  any of these required data files. ~/geant4/data

December 7, 2009          APG4WS2009            73
For now, pick up the "data files for low energy electromagnetic
processes":

$ mkdir –p $HOME/geant4/data
$ cd $HOME/geant4/data
$ wget
http://geant4.web.cern.ch/geant4/support/source/G4EMLOW.6.2.tar.gz
$ tar zxvf G4EMLOW.6.2.tar.gz

The unpacking process will begin, starting with:
G4EMLOW6.2/
G4EMLOW6.2/auger/
G4EMLOW6.2/auger/au-tr-pr-10.dat
G4EMLOW6.2/auger/au-tr-pr-100.dat
G4EMLOW6.2/auger/au-tr-pr-11.dat

And ending with:
G4EMLOW6.2/tripdata/pp-trip-cs-95.dat
G4EMLOW6.2/tripdata/pp-trip-cs-96.dat
G4EMLOW6.2/tripdata/pp-trip-cs-97.dat
G4EMLOW6.2/tripdata/pp-trip-cs-98.dat
G4EMLOW6.2/tripdata/pp-trip-cs-99.dat
 December 7, 2009             APG4WS2009                          74
Doing the Initial Build
• TAKE YOUR TIME AT THIS STAGE, DON'T RUSH IT.
• Mistakes made at this stage can be very time-consuming to correct. Slow
  down.
• Maybe get a cup of coffee (or a glass of wine) before you
  proceed. Breathe.
• Finally, unless you're absolutely sure you are starting from a nice clean
  system, make sure you don't have any pre-existing Geant4 environment
  variables. You can use the "printenv" or “env” command to show all
  variables, and filter this with a "grep" for the string G4 as follows:
• From a Terminal or xterm window:
• printenv | grep G4
• If any variables show up, find out what is setting them and remove
  them. They might be coming from your .login or .cshrc file or from some
  other script that you invoke upon login for some other project. Take the
  time now to find the cause and resolve it.


December 7, 2009                  APG4WS2009                              75
Basic Environment Variables for sh
         family including bash
export G4SYSTEM=Linux-g++
export G4INSTALL=$HOME/geant4/geant4.9.2.p02
export CLHEP_BASE_DIR=$HOME/geant4/clhep
export G4VIS_BUILD_DAWN_DRIVER=1
export G4VIS_BUILD_VRML_DRIVER=1
export G4VIS_BUILD_RAYTRACERX_DRIVER=1
export G4VIS_BUILD_OPENGLX_DRIVER=1
export G4VIS_BUILD_OPENGLXM_DRIVER=1
# export G4LIB_BUILD_GDML=1 # if you want to build GDML
# export XERCESCROOT=/usr    # if you want to build GDML




 December 7, 2009             APG4WS2009                   76
After setup environment varuables, move to geant4 source directory
and start to make it:
$ cd $G4INSTALL/source # correspond to
$HOME/geant4/geant4.9.2.p02/source

$ export LANG=POSIX
$ make 2>&1 | tee make.log
...

$ make incudes
...




 December 7, 2009             APG4WS2009                        77
Check Your Installation
• It should be noted that environment valuables
  at building Geant4 main libraries and your
  applications are different! (not always)




December 7, 2009            APG4WS2009        78
export G4SYSTEM=Linux-g++
export G4INSTALL=$HOME/geant4/geant4.9.2.p02
export CLHEP_BASE_DIR=$HOME/geant4/clhep
# export G4LIB_USE_GDML=1 # if you want to use GDML
# export XERCESCROOT=/usr # if you want to use GDML
export G4VIS_USE_DAWN=1
export G4VIS_USE_VRML=1
export G4VIS_USE_RAYTRACERX=1
export G4VIS_USE_OPENGLX=1
export G4VIS_USE_OPENGLXM=1
export G4UI_USE_TCSH=1
export G4UI_USE_GAG=1

export   G4NEUTRONHPDATA=$HOME/geant4/data/G4NDL3.13
export   G4LEDATA==$HOME/geant4/data/G4EMLOW6.2
export   G4LEVELGAMMADATA==$HOME/geant4/data/PhotonEvaporation2.0
export   G4RADIOACTIVEDATA==$HOME/geant4/data/RadioactiveDecay3.2
export   G4ABLADATA==$HOME/geant4/data/G4ABLA3.0

# if you want to link dynamic library libeCLHEP.so, not libCLHEP.a
# export LD_LIBRARY_PATH=$CLHEP_BASE_DIR/lib

 December 7, 2009               APG4WS2009                          79
$ cd /tmp
$ cp –a $G4INSTALL/examples/novice/N01 .
$ cd N01

  Important & Convenient Tips!
  Just insert one line G4WORKDIR = . In your GNUmakefile
  This variable specifies your working directory, i.e. everything
  are build in this directory.
  Otherwise your application will be placed under $G4INSTALL
name := exampleN01
G4TARGET := $(name)
G4EXLIB := true

G4WORKDIR = .

ifndef G4INSTALL
  G4INSTALL = ../../..
endif

.PHONY: all
all: lib bin

include $(G4INSTALL)/config/binmake.gmkAPG4WS2009
  December 7, 2009                                                  80
$ make
…
$ ./bin/Linux-g++/exampleN01

*************************************************************
 Geant4 version Name: geant4-09-02-patch-01    (13-March-2009)
                      Copyright : Geant4 Collaboration
                      Reference : NIM A 506 (2003), 250-303
                            WWW : http://cern.ch/geant4
*************************************************************

...snip

Track (trackID 1, parentID 0) is processed with stopping code 2
### pop requested out of 0 stacked tracks.
### 0 waiting tracks are re-classified to
       0 urgent tracks and 0 waiting tracks.
NULL returned from G4StackManager.
Terminate current event processing.
Run terminated.
Run Summary
  Number of events processed : 3
  User=0s Real=0.01s Sys=0s
G4December 7, 2009
   kernel has come to Quit state.APG4WS2009                       81
How to keep up to date
• Major/Minor release: one time a year (end of
  Year usually)
• Beta release: 6 months prior to major/minor
  release (June usually)
• Patch release: a few times a year (irregular)

• If find the latest version, download and
  rebuild it
      – It is subject for Geant4 users to keep up-to-date!
December 7, 2009            APG4WS2009                       82
Shall we have a break?
QA and Comments

Note that we should lock this room and
return a key to administration office so
 we would like to close this session by
               ~5:45PM
Acknowledgement
http://www-public.slac.stanford.edu/geant4/Tutorial2009.asp
         Many of slides are copied and pasted from SLAC
         Geant4 Tutorial Course 2009
         Thanks to Joseph Perl and SLAC Geant4 Team


     http://www-geant4.kek.jp/g4ws09/training.php

Communication channel to me

                   Go Iwai, KEK/CRC
                   go.iwai@kek.jp

December 7, 2009   As goiwai onAPG4WS2009                 85

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Geant4 Novice Training Course in Asia-Pacific Geant4 Workshop and Training Course 2009 held at Epochal, Tsukuba, Japan during 7-12 Dec 2009

  • 1. Asia-Pacific Geant4 Workshop and Training Course 2009 7-12 December 2009 @ Tsukuba International Congress Center (Epochal), Tsukuba, Japan One Day Training Course http://www-geant4.kek.jp/g4ws09/training.php All materials in this training course are designed for non native English speakers & Geant4 novice users so that slides are described as verbose as possible. Consequently, participants can study by themselves even after this course. “Slides as a Textbook” Go Iwai, KEK/CRC go.iwai@kek.jp
  • 2. Safety First! We are here Lv4 • Emergency exits and assembly point • Check your evacuation route • Don’t use the lift in an emergency December 7, 2009 APG4WS2009 2
  • 3. Welcome to Earthquake Country • Be aware of exits in your building • Fire or other emergency evacuation – Follow building residents out of building to the assembly area • Earthquake – Remain in building: Duck, cover, and hold position until shaking stops – Evacuate building to assembly area outside (follow others) – Stay away from windows, downed power lines • In the event of an emergency – Dial 110 for PD, or – Dial 119 for Fires and Ambulance – Provide address • Congress Centre (Epochal): 2-20-3,Takezono,Tsukuba • OKURA FRONTIER HOTELTSUKUBA EPOCHAL: 2-20-1,Takezono, Tsukuba • Daiwa Roynet Hotel: 1-5-7 Azuma, Tsukuba December 7, 2009 APG4WS2009 3
  • 4. Networking • WiFi – IEEE 802.11b or 802.11g compliant adaptors should be accepted – SSID: tsukuba04 – WEP: Open (Not excypted) • Wired connection – Limited number of sockets: ~16 – Supplied only in front area of this room – If you need wired connection, please let us know • Let us know if you have any difficulties or questions December 7, 2009 APG4WS2009 4
  • 5. Plan for the week • Talks and practical – Geant4 installation (this course) – Others are shown in next a few slides • Discussion – Before and after each module 5 December 7, 2009 APG4WS2009
  • 6. Tuesday • Introduction to Geant4 • History of Geant4 • Upcoming release Geant4 version 9.3 • Don’t miss the reception party at Incarose 6:30-8:30PM! December 7, 2009 APG4WS2009 6
  • 7. Wednesday • Basic Introduction & structure of Geant4 (in Lecture 1) • Introduction to Hadronic & EM Physics (in Lecture 1) • More Physics (in Lecture II-1) • Still more Physics mainly focused on Medicals (in Lecture II-2) • Working session feedback report from users December 7, 2009 APG4WS2009 7
  • 8. Thursday • Geometry Placement, Physics and Primary Particles (Lecture III) • User Interface, Materials and Scoring (Lecture IV) • Working session feedback report from users December 7, 2009 APG4WS2009 8
  • 9. Friday • Visualization, Advanced geometry placement, and Detector sensitivity (Lecture V) • Documentation and discussion with your insights we can improve… (Lecture VI) • Follow up for this course (150min) We can follow up on Friday afternoon if anything spill out of this course December 7, 2009 APG4WS2009 9
  • 10. Agenda Today Time Duration Contents 13:30 - 14:30 60min Introduction 14:30 - 14:45 15min Break 14:45 - 15:45 60min Hands-on work 15:45 - 16:00 15min Break 16:00 - 16:30 30min Installation & Tips 16:30 – 18:00 90min QA & comments December 7, 2009 APG4WS2009 10
  • 11. Aims in this session • EVERY participants can get started in Geant4 • EVERY participants can install Geant4 by themselves • EVERY participants can proceed next step – i.e. application development! December 7, 2009 APG4WS2009 11
  • 12. Not aims in this session • I don’t aim… • Advanced technical matter – How to create materials and geometries in Geant4 – How to inject particles – How to define own physics process – And so on… • But question is welcome of course! • I try to profile your questions or difficulties (we have!) and then, allocate appropriate persons to them December 7, 2009 APG4WS2009 12
  • 13. Starting Point of the Workshop • Tips to make our workshop successfull – To make ourselves comfortable – To be relax during the workshop • Tsukuba is designed as science city… • We don’t have so many choices • A few personal recommendation can be shown in next a few slides December 7, 2009 APG4WS2009 13
  • 14. http://www-geant4.kek.jp/g4ws09/access.php Google map may help you Lunch CASA Tsukuba Epochal ~1,000JPY Direct access through concourse We are here December 7, 2009 APG4WS2009 14
  • 15. http://www-geant4.kek.jp/g4ws09/access.php Google map may help you Lunch KFC ~600JPY 500m away 12 min by walk Ton-Q We are here ~2,000JPY 600m away 15 min by walk December 7, 2009 APG4WS2009 15
  • 16. http://www-geant4.kek.jp/g4ws09/access.php Google map may help you Dinner Sushi: Kintaro Sushi: Yagura ~5,000JPY ~6,000JPY OKURA FRONTIER HOTEL TSUKUBA BBQ: Shu-Yen EPOCHAL ~5,000JPY 200m J-Pub: Tairyo-Maru ~5,000JPY (depend Reception Party at Many restaurant should on quantity & quality be found basement of Incarose of your drink!) DaysTown Tsukuba 18:30-20:30 on Tue We are here December 7, 2009 APG4WS2009 16
  • 17. http://www-geant4.kek.jp/g4ws09/access.php Google map may help you Shopping Daiwa Roynet Hotel Q’t Shopping Center OKURA FRONTIER HOTEL TSUKUBA EPOCHAL Seibu Shopping Center 500m December 7, 2009 APG4WS2009 17
  • 18. http://www-geant4.kek.jp/g4ws09/access.php Google map may help you Shopping IIAS Tsukuba: Shopping moll Kenkyu-Gakuen Station next to Tsukuba Sta. 2min next station ~50m walking distance December 7, 2009 APG4WS2009 18
  • 19. Who am I? My name Go Iwai Where I am working Computing Research Center KEK, Tsukuba My experience in 10 years! since beta-release when I was a MC students! Geant4 I am not wizard… Actually, same with most of you. Platform today Scientific Linux 5.4 x86_64 on VMware Windows Vista x64 as host machine Platform in usual work OpenSUSE on physical box as desktop machine Most of development are on remote resources What I aim in this It’s clear: I am hoping that EVERY participants can get started in course Geant4, can install Geant4 by themselves, can proceed next step, i.e. application development! What community I am My original background was HEP, nowadays I am getting involved in involved in distributed computing science, e.g. LCG. Goal in my research My main responsibility is to design/coordinate/implement national computing resources for a general purpose infrastructure and to show December 7, 2009 my community people how to utilize this with their legacy resources. 19 APG4WS2009
  • 20. Who’s here!? Please give us your… • Name • Where you work • Your experience in Geant4 – Enough for rough estimation, e.g. 1day? 1week? 1year? • Platform – Today? – In usual work? • What you aim in this course • What community/experiment you are involved in – And role in your community/experiment • Goal in your research or work December 7, 2009 APG4WS2009 20
  • 21. Break before Hands-on works? If you are not yet ready to start hands-on works, please let us know! I have not yet connected the Internet! I have not yet downloaded VM images! I have not yet installed VMware! I have not yet…. I can not…
  • 23. Each Group consists of ~4 members We organize based on international Build up Team collaboration! Front of Room Entrance door Team H Team D Team B Entrance door Team F Team G Team A Team C Team E December 7, 2009 APG4WS2009 23
  • 25. Introduction • As the admin on Grid computing at KEK – Keep up-to-date with the latest software on WNs as well as local cluster machines • A few software is locally packaged out RPM – Including Geant4-related software. – Great improvement on daily duties. • RPMed Geant4 is useful for – Administrators – Application developers – Lectures in tutorial courses • Scope of presentation – Sharing experiences among those who have relevant activities – Help for users who have a difficulty of its long installation time or keeping up-to-date December 7, 2009 APG4WS2009 25
  • 26. Technology Choice of Package Management APT vs. YUM * Perhaps reflecting my bias Pros Cons APT Wider support across distributions (since its a Debian tool) Not a base part of the FC package set. Perhaps a slightly higher learning curve to use effectively. Many users may be more familiar with APT rather than Harder to roll my own repository YUM EGEE developer team will stop providing apt repository in future YUM Compatible with many update tools, e.g. up2date, apt and Few graphical update/management tool. Yast EGEE developer team will possibly support only YUM on SL4 in future Comes with Fedora by default, widely supported by many RPM repositories. Fairly easy to roll my own repository Simple and powerful user interface • Neither found significant advantage nor disadvantage in APT/YUM • It seems using YUM is better way – As the administrator on Grid December 7, 2009 APG4WS2009 26
  • 27. Quicker Installation • Just 1min ready to go Geant4 – If network performance is reasonable  • Easy to keep up-to- date – No more waste time for installation http://repo.cc.kek.jp/ December 7, 2009 APG4WS2009 27
  • 28. Contents of Packages Package Content/Comment geant4 Dynamic libraries e.g.: libG4FR.so, libG4OpenGL.so, libG4RayTracer.so, ... geant4-devel Static libraries , header files and gmk files e.g.: libG4FR.a, libG4OpenGL.a, libG4RayTracer.a, ..., G4RunManager.hh, Stack of geant4 G4RunManagerKernel.hh, ..., common.gmk, binmake.gmk, ... geant4-source Source tree i.e.: All files placed in $G4INSTALL/source clhep Dynamic libraries e.g.: libCLHEP-Random-2.0.4.0.so, libCLHEP.so, ... clhep-devel Static libraries and header files e.g.: libCLHEP-Random-2.0.4.0.so, libCLHEP.so, ..., JamesRandom.h, ThreeVector.h, ... geant4-demo Executable examples Stack of geant4-data e.g.: exampleN01, exampleN02, ..., desktop icon, ... geant4-data Pseudo package, just dependencies are held data_G4NDL ASCII data files data_G4EMLOW All packages depend on geant4-data pseudo package. data_G4ABLA data_Photon... data_Radio... December 7, 2009 APG4WS2009 28
  • 29. Supported Distros and Architecture As of Dec. 2009 • New: ready for Scientific Linux 5! • Redhat Enterprise Linux clones (SL, CentOS, and SLC) both version 4 and 5 – Both architectures i386 and x86_64 December 7, 2009 APG4WS2009 29
  • 30. It's really easy, 10 seconds to setup to look up repository here. If your platform is SL5, URL should be addressed: http://repo.cc.kek.jp/SL5/ kek.repo December 7, 2009 APG4WS2009 30
  • 31. Contents of a repo file “kek.repo” Enabled for two stacks geant4 and geant4-data by default December 7, 2009 APG4WS2009 31
  • 32. After placing a repo file in /etc/yum.repos.d, just execute “yum install geant4-demo” to install geant4-demo package December 7, 2009 APG4WS2009 32
  • 33. All dependencies for a geant4-demo package are resolved by yum before staring to install geant4-demo. clhep, geant4 and geant4-data packages are installed in this example. December 7, 2009 APG4WS2009 33
  • 34. Tips: “yum -y install demo” to skip here. December 7, 2009 APG4WS2009 34
  • 35. To make sure to set up your environment valuable, logout here and login again December 7, 2009 APG4WS2009 35
  • 36. After installing geant4-demo, you should find short cut for a demo application in application menu list. December 7, 2009 APG4WS2009 36
  • 37. You can find an icon on your desktop also December 7, 2009 APG4WS2009 37
  • 38. Open up terminal window and control window by double clicking the desktop icon. December 7, 2009 APG4WS2009 38
  • 39. Selectable tab N01-N07 December 7, 2009 APG4WS2009 39
  • 40. Click “Quit” to terminate a demo December 7, 2009 APG4WS2009 40
  • 41. $ rpm --query --list geant4 geant4 package provides only shared libraries, it’s enough to work applications. December 7, 2009 APG4WS2009 41
  • 42. $ rpm --query --list clhep clhep package also provides only shared libraries. December 7, 2009 APG4WS2009 42
  • 43. Setup • It's really easy, 10 seconds to setup to look up this repository here. # cd /etc/yum.repos.d # wget http://repo.cc.kek.jp/SL4/kek.repo If you are working on SL5: # cd /etc/yum.repos.d # wget http://repo.cc.kek.jp/SL5/kek.repo December 7, 2009 APG4WS2009 43
  • 44. Geant4 Installation End-Level Users • This “geant4” package provides only shared libraries. – Basically it’s sufficient to run an application. – Neither header files nor static libraries are inclusive. (install geant4-devel package if necessary) – Useful for cloning too many nodes. • A package “geant4-data” is ascii data set of Geant4 – Pseudo package, provides only dependencies for actual data files. • i.e. data_G4ABLA, data_G4EMLOW, data_G4NDL, data_PhotonEvaporation and data_RadioactiveDecay # yum install geant4 # yum install geant4-data December 7, 2009 APG4WS2009 44
  • 45. Novice example N01 • Fixed geometry – Ar gas mother volume with Al cylinder and Pb block with Al slices • Incident particle is a geantino – no physics interactions – only the transportation process is enabled • Hard coded batch job and verbosity
  • 46. Novice Example N03 • Sampling calorimeter with layers of Pb absorber and liquid Ar detection gaps (replicas) • Exhaustive material definitions • Command interface • Randomization of incident beam • All EM processes + decay, with separate production cuts for γ, e+, e- • Detector response: E deposit, track length in absorber and gap • Visualization tutorial • Random number seed handling
  • 47. Novie Example N02 • Pb target, Xe gas chambers (parameterized volumes) • All EM processes + decay including charged leptons and charged hadrons • Detector response – Trajectories and chamber hit collections may be stored • Visualization of detector and event • Command interface introduced – Can change target, chamber materials, magnetic field, incident particle type, momentum, etc. at run time
  • 48. Novie Example N04 • Simplified collider detector – all kinds of volume definitions • Magnetic field • PYTHIA primary event generator – Higgs decay by Z0, lepton pairs • Packaged physics list (QGSP) • Event filtering by using stacking mechanism
  • 49. Novice Example N05 • Fast simulation with parameterized showers – EM showers (derived from G4VFastSimulationModel) – Pion showers (for illustration only – not used) • EM physics only – Use of G4FastSimulationManagerProcess • Simplified collider detector geometry – Drift chamber – EM, hadronic calorimeter – Ghost volume
  • 50. Novice Example N06 • Water Cerenkov detector with air “bubble” • Materials – Specification of optical properties – Specification of scintillation spectra • Physics – Optical processes – Generation of Cerenkov radiation, energy loss collected to produce scintillation
  • 51. Novice Example N07 • 3 simplified sandwich calorimeters (Pb, Al, Ar) • Cylindrical ghost volume for scoring • Run-based (as opposed to event-based) hit accumulation • Changing geometries without rebuilding world • Setting different secondary production cuts for each calorimeter using G4Region
  • 52. Make Your Application! December 7, 2009 APG4WS2009 52
  • 53. Geant4 Installation Application Developers • A package “geant4-devel” is necessary if you as the application developer, want header files or static libraries. • The “geant4-source” may be useful as references or debugging. # yum install geant4-devel December 7, 2009 APG4WS2009 53
  • 54. External Tools for Visualization • A package “dawn” and “vrmlview” is necessary if you would like to visualize your simulation results graphically. # yum install vrmlview dawn December 7, 2009 APG4WS2009 54
  • 55. Build & Run $ wget http://www-geant4.kek.jp/g4users/g4tut07/download/exercise- 2.tar.gz $ tar zxvf exercise-2.tar.gz $ cd exercise-2 $ ls GNUmakefile ex02.cc gun.mac include/ src/ vis.mac vrml.mac $ make ... $ ./bin/Linux-g++/ex02 ... ex02(Idle)[/]:/control/execute vis.mac 55
  • 56. Advanced Hands-on Try this if you could finish everything earlier and getting boring  December 7, 2009 APG4WS2009 56
  • 57. Rotate Tube • Edit DetectorConstruction class – src/DetectorDescription.cc G4RotationMatrix* rotM= new G4RotationMatrix; rotM-> rotateY(-90.*deg); new G4PVPlacement(rotM, G4ThreeVector(), tubeLV, "tube", boxLV, false, 0); December 7, 2009 APG4WS2009 57
  • 58. Volume Placement • Place 6 volumes 45 degree rotated about an z-axis • Edit DetectorConstruction class const G4double dphi= 45.*deg; for(G4int i=0; i<6; i++) { // check rotation directioon!! G4ThreeVector armVec= G4ThreeVector(30.*cm, 0., 0.); G4RotationMatrix armRot= G4RotationMatrix(); armVec.rotateZ(dphi*i); armRot.rotateZ(dphi*i); new G4PVPlacement(G4Transform3D(armRot, armVec), boxLV, "box", worldLV, false, i); // copy# should be unique. } December 7, 2009 APG4WS2009 58
  • 59. Beam On! $ ./bin/Linux-g++/ex02 ... ex02(Idle)[/]:/control/execute gun.mac ex02(Idle)[/]:/control/execute vis.mac ex02(Idle)[/]:/run/beamOn December 7, 2009 APG4WS2009 59
  • 60. Let’s have a break!
  • 62. If you can understand a SPEC file in SRPM… • It is the best practical example to install Geant4 – http://repo.cc.kek.jp/SL4/geant4/SRPMS/ – http://repo.cc.kek.jp/SL5/geant4/SRPMS/ To understand dependency in “BuildRequires” BuildRequires: mesa-libGL-devel, mesa-libGLU-devel BuildRequires: xorg-x11-proto-devel, openmotif-devel BuildRequires: xerces-c-devel Everything in a SPEC file! December 7, 2009 APG4WS2009 62
  • 63. To understand build procedure in “%build” section #...snip export G4SYSTEM=%{g4system} export G4INSTALL=%{_builddir}/%{name}.%{version} export CLHEP_BASE_DIR=/opt/clhep export G4LIB_BUILD_GDML=1 export XERCESCROOT=/usr export G4VIS_BUILD_DAWN_DRIVER=1 export G4VIS_BUILD_VRML_DRIVER=1 export G4VIS_BUILD_RAYTRACERX_DRIVER=1 export G4VIS_BUILD_OPENGLX_DRIVER=1 export G4VIS_BUILD_OPENGLXM_DRIVER=1 cd $G4INSTALL/source %{__make} %{?_smp_mflags} export G4LIB_BUILD_SHARED=1 export G4LIB=$G4INSTALL/slib export G4TMP=$G4INSTALL/tmp-slib cd $G4INSTALL/source But some magic %{__make} %{?_smp_mflags} words might %{__make} global discourage us  %{__make} includes December 7, 2009 APG4WS2009 63
  • 64. http://geant4.slac.stanford.edu/tut orial/installation/Geant4.9.2.p02/L inux/Geant4_9_2_p02_Linux_Installat ion.htm Joseph’s Installation Note Note that we assume to install everything into your $HOME/geant4 in your home directory. This means that you don’t need any special privilege. Thank Joseph! Mac and Windows also available, find here: http://geant4.slac.stanford.edu/SLACTutorial09/Agenda.html December 7, 2009 APG4WS2009 64
  • 65. What are the two pieces of software required for building Geant4? • gcc 3.4.6 (for SLC4 or RedHat 4) or gcc 4.2.1 (for SLC5 or RedHat 5): gcc is the compiler that is recommended for Geant4 on Linux. Users have also had success with some other gcc versions, but there is no guarantee. To check your version, type: gcc –v. • CLHEP: CLHEP is a set of base libraries that have long provided great functionality for the particle physics community. They provide things like matrix manipulations, four-vector tools and lists of particle properties. The Geant4 collaboration has chosen to use these libraries rather than re-invent these wheels. Please note that while CLHEP and Geant4 both come out of the particle physics communities, they are separate products - the Geant4 collaboration is not responsible for maintenance, distribution or documentation of CLHEP. December 7, 2009 APG4WS2009 65
  • 66. Getting and Installing CLHEP • Go to the CLHEP source download page: • http://proj-clhep.web.cern.ch/proj- clhep/DISTRIBUTION/clhep.html • From the "Source" section near the bottom of the page, select "clhep-2.0.4.2.tgz“ • which corresponds to: • http://proj-clhep.web.cern.ch/proj- clhep/DISTRIBUTION/distributions/clhep- 2.0.4.2.tgz December 7, 2009 APG4WS2009 66
  • 67. $ cd /tmp $ wget http://proj-clhep.web.cern.ch/proj- clhep/DISTRIBUTION/distributions/clhep-2.0.4.2.tgz And then, $ tar -zxvf clhep-2.0.4.2.tgz The unpacking process will begin, starting with: 2.0.4.2/ 2.0.4.2/CLHEP/ 2.0.4.2/CLHEP/CVS/ 2.0.4.2/CLHEP/CVS/Root 2.0.4.2/CLHEP/CVS/Repository And ending with: 2.0.4.2/CLHEP/Vector/configure 2.0.4.2/CLHEP/config.guess 2.0.4.2/CLHEP/config.sub 2.0.4.2/CLHEP/Makefile.in 2.0.4.2/CLHEP/configure December 7, 2009 APG4WS2009 67
  • 68. Now navigate into the unpacked directory and begin the configuration process. $ cd /tmp/2.0.4.2/CLHEP $ ./configure --prefix $HOME/geant4/clhep You should get a response that starts with: checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking target system type... i686-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install –c checking whether build environment is sane... Yes And ends with: config.status: creating test/exctest4.sh config.status: creating test/exctestNothrow.sh config.status: creating test/excDblThrow.sh config.status: creating Exceptions/defs.h config.status: executing depfiles commands$ cd $HOME/CLHEP/ December 7, 2009 APG4WS2009 68
  • 69. For the following, be sure to type make rather than gmake. It can be very hard to remember which of these to type. One some Linux systems, they may even do the exact same thing, but not always. So for your CLHEP and Geant4 work, don't use gmake. Run the build process: $ make You should get a response that starts with: Making all in Units make[1]: Entering directory `/afs/slac.stanford.edu/u/ey/perl/CLHEP/2.0.4.2/CLHEP/Units‘ Making all in Units make[2]: Entering directory `/afs/slac.stanford.edu/u/ey/perl/CLHEP/2.0.4.2/CLHEP/Units/Units‘ make all-am And ends with: rm -f libCLHEP-2.0.4.2.so liblist=`./getObjectList -shared Units Vector Evaluator GenericFunctions Geometry Random Matrix RandomObjects RefCount Cast Exceptions`; ¥ g++ -O -ansi -pedantic -Wall -D_GNU_SOURCE -g -O2 -o libCLHEP-2.0.4.2.so -shared - Wl,-soname,libCLHEP-2.0.4.2.so $liblist –o libCLHEP-2.0.4.2.so ./build-header make[1]: Leaving directory `/afs/slac.stanford.edu/u/ey/perl/CLHEP/2.0.4.2/CLHEP'Now navigate into the unpacked directory and begin the configuration process. $ make install December 7, 2009 APG4WS2009 69
  • 70. Dynamic or Static? • After completing to install CLHEP, you can find libCLHEP-2.0.4.2.so and libCLHEP-2.0.4.2.a in $HOME/clhep/lib directory. • By default, liker try to link dynamic library, i.e. libCLHEP-2.0.4.2.so – In this case, you should set LD_LIBRARY_PATH as $HOME/clhep/lib – Personally, I don’t recommend this • If you want to use a static library, i.e. libCLHEP-2.0.4.2.a, follow this instruction to remove dynamic library here: $ cd $HOME/geant4/clhep/lib $ ls libCLHEP-2.0.4.2.a libCLHEP-Matrix-2.0.4.2.a libCLHEP-2.0.4.2.so* libCLHEP-Matrix-2.0.4.2.so* libCLHEP-Cast-2.0.4.2.a libCLHEP-Random-2.0.4.2.a libCLHEP-Cast-2.0.4.2.so* libCLHEP-Random-2.0.4.2.so* libCLHEP-Evaluator-2.0.4.2.a libCLHEP-RandomObjects-2.0.4.2.a libCLHEP-Evaluator-2.0.4.2.so* libCLHEP-RandomObjects-2.0.4.2.so* libCLHEP-Exceptions-2.0.4.2.a libCLHEP-RefCount-2.0.4.2.a libCLHEP-Exceptions-2.0.4.2.so* libCLHEP-RefCount-2.0.4.2.so* libCLHEP-GenericFunctions-2.0.4.2.a libCLHEP-Vector-2.0.4.2.a libCLHEP-GenericFunctions-2.0.4.2.so* libCLHEP-Vector-2.0.4.2.so* libCLHEP-Geometry-2.0.4.2.a libCLHEP.a@ libCLHEP-Geometry-2.0.4.2.so* libCLHEP.so@ $ rm libCLHEP.so December 7, 2009 APG4WS2009 70
  • 71. Getting Geant4 • From the top of the Geant4 home page: – http://geant4.web.cern.ch/geant4/ • Select "Download" from near the top right corner of the page. • Select "Unix tar format, compressed using gzip" • which corresponds to: – http://geant4.web.cern.ch/geant4/support/source /geant4.9.2.p02.tar.gz December 7, 2009 APG4WS2009 71
  • 72. Navigate to this directory and unpack the file: $ cd $HOME/geant4 $ wget http://geant4.web.cern.ch/geant4/support/source/geant4.9.2.p02.tar. gz $ tar zxvf geant4.9.2.p02.tar.gz The unpacking process will begin, starting with: geant4.9.2.p02/ geant4.9.2.p02/ReleaseNotes/ geant4.9.2.p02/ReleaseNotes/Beta4.9.2-1.txt geant4.9.2.p02/ReleaseNotes/Patch4.4.0-1.txt geant4.9.2.p02/ReleaseNotes/Patch4.4.0-2.txt And ending with: geant4.9.2.p02/source/visualization/modeling/src/G4VModel.cc geant4.9.2.p02/source/visualization/modeling/src/G4VTrajectoryModel .cc geant4.9.2.p02/source/visualization/modeling/src/G4VisTrajContext.c c geant4.9.2.p02/source/GNUmakefile December 7, 2009 APG4WS2009 72
  • 73. Getting Data Files • Depending on the physics of your particular application, you may need to install additional data files. These data files can be downloaded separately from the Geant4 source distribution page (the same place where you got Geant4 itself). • Create a new folder within ~/geant4 to hold any of these required data files. ~/geant4/data December 7, 2009 APG4WS2009 73
  • 74. For now, pick up the "data files for low energy electromagnetic processes": $ mkdir –p $HOME/geant4/data $ cd $HOME/geant4/data $ wget http://geant4.web.cern.ch/geant4/support/source/G4EMLOW.6.2.tar.gz $ tar zxvf G4EMLOW.6.2.tar.gz The unpacking process will begin, starting with: G4EMLOW6.2/ G4EMLOW6.2/auger/ G4EMLOW6.2/auger/au-tr-pr-10.dat G4EMLOW6.2/auger/au-tr-pr-100.dat G4EMLOW6.2/auger/au-tr-pr-11.dat And ending with: G4EMLOW6.2/tripdata/pp-trip-cs-95.dat G4EMLOW6.2/tripdata/pp-trip-cs-96.dat G4EMLOW6.2/tripdata/pp-trip-cs-97.dat G4EMLOW6.2/tripdata/pp-trip-cs-98.dat G4EMLOW6.2/tripdata/pp-trip-cs-99.dat December 7, 2009 APG4WS2009 74
  • 75. Doing the Initial Build • TAKE YOUR TIME AT THIS STAGE, DON'T RUSH IT. • Mistakes made at this stage can be very time-consuming to correct. Slow down. • Maybe get a cup of coffee (or a glass of wine) before you proceed. Breathe. • Finally, unless you're absolutely sure you are starting from a nice clean system, make sure you don't have any pre-existing Geant4 environment variables. You can use the "printenv" or “env” command to show all variables, and filter this with a "grep" for the string G4 as follows: • From a Terminal or xterm window: • printenv | grep G4 • If any variables show up, find out what is setting them and remove them. They might be coming from your .login or .cshrc file or from some other script that you invoke upon login for some other project. Take the time now to find the cause and resolve it. December 7, 2009 APG4WS2009 75
  • 76. Basic Environment Variables for sh family including bash export G4SYSTEM=Linux-g++ export G4INSTALL=$HOME/geant4/geant4.9.2.p02 export CLHEP_BASE_DIR=$HOME/geant4/clhep export G4VIS_BUILD_DAWN_DRIVER=1 export G4VIS_BUILD_VRML_DRIVER=1 export G4VIS_BUILD_RAYTRACERX_DRIVER=1 export G4VIS_BUILD_OPENGLX_DRIVER=1 export G4VIS_BUILD_OPENGLXM_DRIVER=1 # export G4LIB_BUILD_GDML=1 # if you want to build GDML # export XERCESCROOT=/usr # if you want to build GDML December 7, 2009 APG4WS2009 76
  • 77. After setup environment varuables, move to geant4 source directory and start to make it: $ cd $G4INSTALL/source # correspond to $HOME/geant4/geant4.9.2.p02/source $ export LANG=POSIX $ make 2>&1 | tee make.log ... $ make incudes ... December 7, 2009 APG4WS2009 77
  • 78. Check Your Installation • It should be noted that environment valuables at building Geant4 main libraries and your applications are different! (not always) December 7, 2009 APG4WS2009 78
  • 79. export G4SYSTEM=Linux-g++ export G4INSTALL=$HOME/geant4/geant4.9.2.p02 export CLHEP_BASE_DIR=$HOME/geant4/clhep # export G4LIB_USE_GDML=1 # if you want to use GDML # export XERCESCROOT=/usr # if you want to use GDML export G4VIS_USE_DAWN=1 export G4VIS_USE_VRML=1 export G4VIS_USE_RAYTRACERX=1 export G4VIS_USE_OPENGLX=1 export G4VIS_USE_OPENGLXM=1 export G4UI_USE_TCSH=1 export G4UI_USE_GAG=1 export G4NEUTRONHPDATA=$HOME/geant4/data/G4NDL3.13 export G4LEDATA==$HOME/geant4/data/G4EMLOW6.2 export G4LEVELGAMMADATA==$HOME/geant4/data/PhotonEvaporation2.0 export G4RADIOACTIVEDATA==$HOME/geant4/data/RadioactiveDecay3.2 export G4ABLADATA==$HOME/geant4/data/G4ABLA3.0 # if you want to link dynamic library libeCLHEP.so, not libCLHEP.a # export LD_LIBRARY_PATH=$CLHEP_BASE_DIR/lib December 7, 2009 APG4WS2009 79
  • 80. $ cd /tmp $ cp –a $G4INSTALL/examples/novice/N01 . $ cd N01 Important & Convenient Tips! Just insert one line G4WORKDIR = . In your GNUmakefile This variable specifies your working directory, i.e. everything are build in this directory. Otherwise your application will be placed under $G4INSTALL name := exampleN01 G4TARGET := $(name) G4EXLIB := true G4WORKDIR = . ifndef G4INSTALL G4INSTALL = ../../.. endif .PHONY: all all: lib bin include $(G4INSTALL)/config/binmake.gmkAPG4WS2009 December 7, 2009 80
  • 81. $ make … $ ./bin/Linux-g++/exampleN01 ************************************************************* Geant4 version Name: geant4-09-02-patch-01 (13-March-2009) Copyright : Geant4 Collaboration Reference : NIM A 506 (2003), 250-303 WWW : http://cern.ch/geant4 ************************************************************* ...snip Track (trackID 1, parentID 0) is processed with stopping code 2 ### pop requested out of 0 stacked tracks. ### 0 waiting tracks are re-classified to 0 urgent tracks and 0 waiting tracks. NULL returned from G4StackManager. Terminate current event processing. Run terminated. Run Summary Number of events processed : 3 User=0s Real=0.01s Sys=0s G4December 7, 2009 kernel has come to Quit state.APG4WS2009 81
  • 82. How to keep up to date • Major/Minor release: one time a year (end of Year usually) • Beta release: 6 months prior to major/minor release (June usually) • Patch release: a few times a year (irregular) • If find the latest version, download and rebuild it – It is subject for Geant4 users to keep up-to-date! December 7, 2009 APG4WS2009 82
  • 83. Shall we have a break?
  • 84. QA and Comments Note that we should lock this room and return a key to administration office so we would like to close this session by ~5:45PM
  • 85. Acknowledgement http://www-public.slac.stanford.edu/geant4/Tutorial2009.asp Many of slides are copied and pasted from SLAC Geant4 Tutorial Course 2009 Thanks to Joseph Perl and SLAC Geant4 Team http://www-geant4.kek.jp/g4ws09/training.php Communication channel to me Go Iwai, KEK/CRC go.iwai@kek.jp December 7, 2009 As goiwai onAPG4WS2009 85

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