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LOFAR Transient Detection Pipeline



           Gijs Molenaar
          gijs@pythonic.nl
Agenda
●   Transient detection

●   Pipeline layout

●   Software
Transients Detection


●   Static sources are boring

●   Transient – something that changes

●   Huge amount of data – automation
Image data
The data
●   1 datacube per second
●   10 frequency bands

●   In the future 10 images per second
●   In the future 4 different polarization

●   Non stop
Transient detection Pipeline

    Extract metadata   Quality check    Source extraction
                                       Source extraction




                                                            Association   Detection   Classification
Database
●   The glue

●   Distributing computation
●   Image processing
●   Statistics
●   Source extraction
●   Database interactions
Distributed Computation
●   Home made libary
●   SSH based

●   Difficult to debug
●   Difficult to profile
●   Doing research on Celery and Hadoop
Database
●   Move calculation to the data
●   Highly structured
●   Independent data
●   Naturally separable by sky coordinates

●   ~100 TB/year
●   10.000 insert/second
MonetDB
●   Relational
●   Column store DB
●   Fast
●   Auto tuning!
●   Developers next door (CWI)
Challenges
●   Debugging queries

●   MonetDB still in active development
INSERT INTO tempbasesources
(xtrsrc_id
,datapoints
,I_peak_sum
,I_peak_sq_sum
,weight_peak_sum
,weight_I_peak_sum
,weight_I_peak_sq_sum
)
SELECT b0.xtrsrc_id
,b0.datapoints
+ 1 AS datapoints
,b0.I_peak_sum
+ x0.I_peak AS i_peak_sum
,b0.I_peak_sq_sum
+ x0.I_peak * x0.I_peak AS i_peak_sq_sum
,b0.weight_peak_sum
+ 1 / (x0.I_peak_err * x0.I_peak_err) AS weight_peak_sum
,b0.weight_I_peak_sum
+ x0.I_peak / (x0.I_peak_err * x0.I_peak_err)
AS weight_i_peak_sum
,b0.weight_I_peak_sq_sum
+ x0.I_peak * x0.I_peak / (x0.I_peak_err * x0.I_peak_err)
AS weight_i_peak_sq_sum
FROM basesources b0
,extractedsources x0
WHERE x0.image_id = @imageid
AND b0.zone BETWEEN CAST(FLOOR((x0.decl - @theta) / x0.zoneheight
) AS INTEGER)
AND CAST(FLOOR((x0.decl + @theta) / x0.zoneheight
) AS INTEGER)
AND ASIN(SQRT((x0.x - b0.x)*(x0.x - b0.x)
+(x0.y - b0.y)*(x0.y - b0.y)
+(x0.z - b0.z)*(x0.z - b0.z)
)/2
)
/
SQRT(x0.ra_err * x0.ra_err + b0.ra_err * b0.ra_err
+x0.decl_err * x0.decl_err + b0.decl_err * b0.decl_err)
< @assoc_r;
MonetDB and Python

●   We maintain the MonetDB Python API

●   http://pypi.python.org/pypi/python-monetdb/

●   Problems? Ask me :)
Djonet
●   MonetDB backend for Django
●   https://github.com/gijzelaerr/djonet

●   brew install monetdb
●   pip install python-monetdb djonet

●   Contributions are welcome!
VO events
●   Standardized language
●   Report observations of
    astronomical events

●   Hey world, check this supernova
    out over there

●   http://comet.transientskp.org
Visualisation
●   Web interface
●   Django!
●   Not public (yet)
More
●   http://www.transientskp.org/
●   http://www.lofar.org/
●   http://www.aartfaac.org/
Questions?

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LOFAR - finding transients in the radio spectrum

  • 1. LOFAR Transient Detection Pipeline Gijs Molenaar gijs@pythonic.nl
  • 2. Agenda ● Transient detection ● Pipeline layout ● Software
  • 3. Transients Detection ● Static sources are boring ● Transient – something that changes ● Huge amount of data – automation
  • 5. The data ● 1 datacube per second ● 10 frequency bands ● In the future 10 images per second ● In the future 4 different polarization ● Non stop
  • 6. Transient detection Pipeline Extract metadata Quality check Source extraction Source extraction Association Detection Classification Database
  • 7. The glue ● Distributing computation ● Image processing ● Statistics ● Source extraction ● Database interactions
  • 8. Distributed Computation ● Home made libary ● SSH based ● Difficult to debug ● Difficult to profile ● Doing research on Celery and Hadoop
  • 9. Database ● Move calculation to the data ● Highly structured ● Independent data ● Naturally separable by sky coordinates ● ~100 TB/year ● 10.000 insert/second
  • 10. MonetDB ● Relational ● Column store DB ● Fast ● Auto tuning! ● Developers next door (CWI)
  • 11. Challenges ● Debugging queries ● MonetDB still in active development
  • 12. INSERT INTO tempbasesources (xtrsrc_id ,datapoints ,I_peak_sum ,I_peak_sq_sum ,weight_peak_sum ,weight_I_peak_sum ,weight_I_peak_sq_sum ) SELECT b0.xtrsrc_id ,b0.datapoints + 1 AS datapoints ,b0.I_peak_sum + x0.I_peak AS i_peak_sum ,b0.I_peak_sq_sum + x0.I_peak * x0.I_peak AS i_peak_sq_sum ,b0.weight_peak_sum + 1 / (x0.I_peak_err * x0.I_peak_err) AS weight_peak_sum ,b0.weight_I_peak_sum + x0.I_peak / (x0.I_peak_err * x0.I_peak_err) AS weight_i_peak_sum ,b0.weight_I_peak_sq_sum + x0.I_peak * x0.I_peak / (x0.I_peak_err * x0.I_peak_err) AS weight_i_peak_sq_sum FROM basesources b0 ,extractedsources x0 WHERE x0.image_id = @imageid AND b0.zone BETWEEN CAST(FLOOR((x0.decl - @theta) / x0.zoneheight ) AS INTEGER) AND CAST(FLOOR((x0.decl + @theta) / x0.zoneheight ) AS INTEGER) AND ASIN(SQRT((x0.x - b0.x)*(x0.x - b0.x) +(x0.y - b0.y)*(x0.y - b0.y) +(x0.z - b0.z)*(x0.z - b0.z) )/2 ) / SQRT(x0.ra_err * x0.ra_err + b0.ra_err * b0.ra_err +x0.decl_err * x0.decl_err + b0.decl_err * b0.decl_err) < @assoc_r;
  • 13. MonetDB and Python ● We maintain the MonetDB Python API ● http://pypi.python.org/pypi/python-monetdb/ ● Problems? Ask me :)
  • 14. Djonet ● MonetDB backend for Django ● https://github.com/gijzelaerr/djonet ● brew install monetdb ● pip install python-monetdb djonet ● Contributions are welcome!
  • 15. VO events ● Standardized language ● Report observations of astronomical events ● Hey world, check this supernova out over there ● http://comet.transientskp.org
  • 16. Visualisation ● Web interface ● Django! ● Not public (yet)
  • 17. More ● http://www.transientskp.org/ ● http://www.lofar.org/ ● http://www.aartfaac.org/