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WIFI SSID:SparkAISummit | Password: UnifiedAnalytics
Ameet Kini, Databricks
April 24, 2019
Simplifying Change Data Capture
Using Delta Lakes
#UnifiedAnalytics #SparkAISummit
About Me
Current: Regional Manager (Federal) of Resident Architects @ Databricks
…
A while ago
• OS Geo on Spark 0.6
• Almost spoke at Spark Summit 2014
…
A while while ago
• MapReduce @ Google (in 2006 pre Hadoop)
• Kernel Dev @ Oracle
…
Outline
• Journey through evolution of CDC in Databricks
– Pretty architecture diagrams
• Understand what goes behind the scenes
– “Pretty” SQL Query plans J
• Preview of key upcoming features
4#UnifiedAnalytics #SparkAISummit
Change Data Capture
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What: Collect and Merge changes
From: One or more sources
To: One or more destinations
Historically…
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CDC with Databricks circa 2017
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What worked and what did not?
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Worked
• Least Disruptive adding Databricks to existing stack
• Easy to get started with spark.read.jdbc
Did not work
• No $$$ savings or EDW compute offload
• EDW overloaded, which added constraints on when S3
refresh jobs could be scheduled
• Refresh rates are at best nightly due to concurrent read /
write limitations of vanilla Parquet
Delta simplifies the stack…
9#UnifiedAnalytics #SparkAISummit
With Delta circa 2018
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Oracle CDC
Tables captured
using database triggers
Every refresh period, run these two
1. INSERT into staging table
2. INSERT OVERWRITE modified
partitions of final table
See https://databricks.com/blog/2018/10/29/simplifying-change-data-capture-with-databricks-delta.html
What worked and what did not?
11#UnifiedAnalytics #SparkAISummit
Worked
• Delta removed dependency on EDW for CDC
• Refresh rates went from nightly to sub-hourly
• Easy to scale to multiple pipelines using features like
notebook workflows and jobs
Did not work
• Scheme relied on effective partitioning to minimize
updates, requires domain specific knowledge
• Where there is no effective partitioning, Step 2 is
effectively overwriting most of table…S..L..O..W
See https://databricks.com/blog/2018/10/29/simplifying-change-data-capture-with-databricks-delta.html
Efficient Upserts in Delta
MERGE INTO users
USING changes ON users.userId = changes.userId
WHEN MATCHED AND FLAG=’D’ THEN DELETE
WHEN MATCHED AND FLAG<>’D’
THEN UPDATE address = changes.addresses
WHEN NOT MATCHED
THEN INSERT (userId, address)
VALUES (changes.userId, changes.address)
12#UnifiedAnalytics #SparkAISummit
Deletes
Updates
Inserts
Source Table
Target Table
A single command
to process all
three action types
Expanded syntax of MERGE INTO introduced in Databricks Runtime 5.1
See https://databricks.com/blog/2019/03/19/efficient-upserts-into-data-lakes-databricks-delta.html
Works for Streaming and Batch
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streamingSessionUpdatesDF.writeStream.foreachBatch { (microBatchOutputDF: DataFrame, batchId: Long) =>
microBatchOutputDF.createOrReplaceTempView("updates")
microBatchOutputDF.sparkSession.sql(s"""
MERGE INTO users
USING changes ON users.userId = changes.userId
WHEN MATCHED AND FLAG=’D’
THEN DELETE
WHEN MATCHED AND FLAG<>’D’
THEN UPDATE address = changes.addresses
WHEN NOT MATCHED
THEN INSERT (userId, address) VALUES (changes.userId, changes.address)
""")
}.start()
See https://databricks.com/blog/2019/03/19/efficient-upserts-into-data-lakes-databricks-delta.html
Used by MySQL Replication
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Public Preview in DBR-5.3 https://docs.databricks.com/delta/mysql-delta.html#mysql-delta
What: CDC MySQL tables into Delta
From: MySQL tables in binlog format
To: Delta
With Delta Now
15#UnifiedAnalytics #SparkAISummit
Oracle CDC
Tables captured
using database triggers
Every refresh period, run these two
1. INSERT into staging table
2. INSERT OVERWRITE modified
partitions of final table
Every refresh period, MERGE
changes into table
Visually
16#UnifiedAnalytics #SparkAISummit
1 3
5 6
7 9
Updates
Users
New FilesOld Files
Files with ”Insert” Records
Files with ”Update” Records
Files with ”Delete” Records
Partition 1
Partition 2
Partition 3
2
4
8
10
11
12
Delta marks these files stale and eligible for vacuum
Outline
• Journey through evolution of CDC in Databricks
– Pretty architecture diagrams
• Understand what goes behind the scenes
– “Pretty” SQL Query plans J
• Preview of key upcoming features
17#UnifiedAnalytics #SparkAISummit
18#UnifiedAnalytics #SparkAISummit
A deep dive into MERGE
A tale of two joins
MERGE runs two joins
• Inner Join
– Between Source and Target
– Goal: find files that need to be modified (e.g., files 2, 4, 8)
• Outer Join
– Between Source and subset-of-files-identified-by-Inner-Join
– Goal: write out modified and unmodified data together (e.g., ”New Files”)
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Say, if you run this…
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Merging a 1000-row source into a 100 million row target, using TPC-DS
The two joins under the hood…
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Runs two joins
• Inner Join
– Between Source and Target
– Goal: find files that need to be modified (e.g., files 2, 4, 8)
• Outer Join
– Between Source and subset-of-files-identified-by-Inner-Join
– Goal: write out modified and unmodified data together (e.g., ”New Files”)
Inner Join takes 7s
Outer Join takes 32s
Let’s peek inside the inner join
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Optimizer picks Broadcast Hash Join
Suitable choice when joining small table (source) with large (target)
But what if it picks Sort Merge instead?
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Same 7s inner join now takes 16s … 2x slower!
This is what Sort Merge looks like
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Inner Join Summary
If |source| << |target|, nudge optimizer into picking broadcast hash join
• Ensure stats are collected on join columns
• Increase spark.sql.autoBroadcastJoinThreshold
appropriately (default: 10MB)
• Use optimizer hints (with joins, does not apply to MERGE)
SELECT /*+ BROADCAST(source) */ ...
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Next: Outer Join
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Runs two joins
• Inner Join
– Between Source and Target
– Goal: find files that need to be modified (e.g., files 2, 4, 8)
• Outer Join
– Between Source and subset-of-files-identified-by-Inner-Join
– Goal: write out modified and unmodified data together (e.g., ”New Files”)
Inner Join takes 7s
Outer Join takes 32s
S3 writes
Outer Join latency tied to…
…amount of data re-written (gray boxes below), S3 writes are slow
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Here we’re writing 3 new files
Let’s see the numbers…
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Target table store_sales_100m
• 100 million rows
• Compacted into 5 parquet files of 1G each (OPTIMIZE ameet.store_sales_100m)
Source table
• 1000 rows
• Drawn from 1, 3, and all 5 files
Outer Join is write-bound
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Key take-aways
• Outer Join time is directly tied to amount of
data written
• Inner Join time is a small proportion of overall
time and does not change as amount of data
written increases
7 6 7
32
66
84
0
10
20
30
40
50
60
70
80
90
100
1x1GB 3x1GB 5x1GB
Time(seconds)
# of files modified
Inner Join Outer Join
MERGE creates small files
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Cause: spark.sql.shuffle.partitions – default 200
Outer Joins are faster as files get smaller
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MERGE on a smaller file takes 18 seconds instead of 39!
0
20
40
60
80
100
1x36MB 1x1GB 3x1GB 5x1GB
Time(seconds)
# of files modified
Inner Join Outer Join
See first two bars
But queries get slower with more small files
32#UnifiedAnalytics #SparkAISummit
Query: select count(*)
from ameet.store_sales_100m
where ss_sold_time_sk=48472)
“Scan” operator is at the root of most queries
Same 100-million row table takes
• 1 second with 5x1GB files, versus
• 12 seconds with 1355 smaller files
OPTIMIZE until now…
Creates large compacted files
• Default: 1GB (controlled by spark.databricks.delta.optimize.maxFileSize)
• Large files great for queries, not for MERGE
• Small files great for MERGE, not for queries
• Complexity in controlling when and where to OPTIMIZE
33#UnifiedAnalytics #SparkAISummit
OPTIMIZE future…is here
Auto Optimize Project
• Adaptive Shuffling controls # and size of files written out
• Automatically triggers a faster OPTIMIZE after files are written out
• Strives for 128MB files
34#UnifiedAnalytics #SparkAISummit
Private Preview in DBR-5.3
https://docs.databricks.com/release-notes/runtime/5.3.html#private-preview-features
Wrap-up
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Summary
Use MERGE INTO for CDC into Delta Lakes
• Unified API for Batch and Streaming
• Efficient: Broadcast joins, Partition Pruning, Compaction, Optimistic Concurrency Control
• Reliable: ACID guarantees on cloud storage, Schema Enforcement, S3 commit service
36#UnifiedAnalytics #SparkAISummit
Summary (contd.)
If you’re diagnosing / tuning MERGE performance
• Inner Join to find files that are modified
– Tip: ensure it uses broadcast hash join wherever applicable
• Outer Join to write modified and unmodified files together
– Latency directly tied to time to write data out to cloud storage
– Tip: Consider using Auto Optimize starting DBR 5.3
37#UnifiedAnalytics #SparkAISummit
Related Talks
• (Wed 1:40pm)
Productizing Structured Streaming Jobs
- Burak Yavuz
• (Thurs 4:40pm)
Apache Spark Core – Deep Dive – Proper Optimization
– Daniel Tomes
• (Wed 11:00am, Thurs 4:40pm)
Building Robust Production Data Pipelines with Databricks Delta
– Joe Widen, Steven Yu, Burak Yavuz
38#UnifiedAnalytics #SparkAISummit

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Simplifying Change Data Capture using Databricks Delta

  • 1. WIFI SSID:SparkAISummit | Password: UnifiedAnalytics
  • 2. Ameet Kini, Databricks April 24, 2019 Simplifying Change Data Capture Using Delta Lakes #UnifiedAnalytics #SparkAISummit
  • 3. About Me Current: Regional Manager (Federal) of Resident Architects @ Databricks … A while ago • OS Geo on Spark 0.6 • Almost spoke at Spark Summit 2014 … A while while ago • MapReduce @ Google (in 2006 pre Hadoop) • Kernel Dev @ Oracle …
  • 4. Outline • Journey through evolution of CDC in Databricks – Pretty architecture diagrams • Understand what goes behind the scenes – “Pretty” SQL Query plans J • Preview of key upcoming features 4#UnifiedAnalytics #SparkAISummit
  • 5. Change Data Capture 5#UnifiedAnalytics #SparkAISummit What: Collect and Merge changes From: One or more sources To: One or more destinations
  • 7. CDC with Databricks circa 2017 7#UnifiedAnalytics #SparkAISummit
  • 8. What worked and what did not? 8#UnifiedAnalytics #SparkAISummit Worked • Least Disruptive adding Databricks to existing stack • Easy to get started with spark.read.jdbc Did not work • No $$$ savings or EDW compute offload • EDW overloaded, which added constraints on when S3 refresh jobs could be scheduled • Refresh rates are at best nightly due to concurrent read / write limitations of vanilla Parquet
  • 9. Delta simplifies the stack… 9#UnifiedAnalytics #SparkAISummit
  • 10. With Delta circa 2018 10#UnifiedAnalytics #SparkAISummit Oracle CDC Tables captured using database triggers Every refresh period, run these two 1. INSERT into staging table 2. INSERT OVERWRITE modified partitions of final table See https://databricks.com/blog/2018/10/29/simplifying-change-data-capture-with-databricks-delta.html
  • 11. What worked and what did not? 11#UnifiedAnalytics #SparkAISummit Worked • Delta removed dependency on EDW for CDC • Refresh rates went from nightly to sub-hourly • Easy to scale to multiple pipelines using features like notebook workflows and jobs Did not work • Scheme relied on effective partitioning to minimize updates, requires domain specific knowledge • Where there is no effective partitioning, Step 2 is effectively overwriting most of table…S..L..O..W See https://databricks.com/blog/2018/10/29/simplifying-change-data-capture-with-databricks-delta.html
  • 12. Efficient Upserts in Delta MERGE INTO users USING changes ON users.userId = changes.userId WHEN MATCHED AND FLAG=’D’ THEN DELETE WHEN MATCHED AND FLAG<>’D’ THEN UPDATE address = changes.addresses WHEN NOT MATCHED THEN INSERT (userId, address) VALUES (changes.userId, changes.address) 12#UnifiedAnalytics #SparkAISummit Deletes Updates Inserts Source Table Target Table A single command to process all three action types Expanded syntax of MERGE INTO introduced in Databricks Runtime 5.1 See https://databricks.com/blog/2019/03/19/efficient-upserts-into-data-lakes-databricks-delta.html
  • 13. Works for Streaming and Batch 13#UnifiedAnalytics #SparkAISummit streamingSessionUpdatesDF.writeStream.foreachBatch { (microBatchOutputDF: DataFrame, batchId: Long) => microBatchOutputDF.createOrReplaceTempView("updates") microBatchOutputDF.sparkSession.sql(s""" MERGE INTO users USING changes ON users.userId = changes.userId WHEN MATCHED AND FLAG=’D’ THEN DELETE WHEN MATCHED AND FLAG<>’D’ THEN UPDATE address = changes.addresses WHEN NOT MATCHED THEN INSERT (userId, address) VALUES (changes.userId, changes.address) """) }.start() See https://databricks.com/blog/2019/03/19/efficient-upserts-into-data-lakes-databricks-delta.html
  • 14. Used by MySQL Replication 14#UnifiedAnalytics #SparkAISummit Public Preview in DBR-5.3 https://docs.databricks.com/delta/mysql-delta.html#mysql-delta What: CDC MySQL tables into Delta From: MySQL tables in binlog format To: Delta
  • 15. With Delta Now 15#UnifiedAnalytics #SparkAISummit Oracle CDC Tables captured using database triggers Every refresh period, run these two 1. INSERT into staging table 2. INSERT OVERWRITE modified partitions of final table Every refresh period, MERGE changes into table
  • 16. Visually 16#UnifiedAnalytics #SparkAISummit 1 3 5 6 7 9 Updates Users New FilesOld Files Files with ”Insert” Records Files with ”Update” Records Files with ”Delete” Records Partition 1 Partition 2 Partition 3 2 4 8 10 11 12 Delta marks these files stale and eligible for vacuum
  • 17. Outline • Journey through evolution of CDC in Databricks – Pretty architecture diagrams • Understand what goes behind the scenes – “Pretty” SQL Query plans J • Preview of key upcoming features 17#UnifiedAnalytics #SparkAISummit
  • 19. A tale of two joins MERGE runs two joins • Inner Join – Between Source and Target – Goal: find files that need to be modified (e.g., files 2, 4, 8) • Outer Join – Between Source and subset-of-files-identified-by-Inner-Join – Goal: write out modified and unmodified data together (e.g., ”New Files”) 19#UnifiedAnalytics #SparkAISummit
  • 20. Say, if you run this… 20#UnifiedAnalytics #SparkAISummit Merging a 1000-row source into a 100 million row target, using TPC-DS
  • 21. The two joins under the hood… 21#UnifiedAnalytics #SparkAISummit Runs two joins • Inner Join – Between Source and Target – Goal: find files that need to be modified (e.g., files 2, 4, 8) • Outer Join – Between Source and subset-of-files-identified-by-Inner-Join – Goal: write out modified and unmodified data together (e.g., ”New Files”) Inner Join takes 7s Outer Join takes 32s
  • 22. Let’s peek inside the inner join 22#UnifiedAnalytics #SparkAISummit Optimizer picks Broadcast Hash Join Suitable choice when joining small table (source) with large (target)
  • 23. But what if it picks Sort Merge instead? 23#UnifiedAnalytics #SparkAISummit Same 7s inner join now takes 16s … 2x slower!
  • 24. This is what Sort Merge looks like 24#UnifiedAnalytics #SparkAISummit
  • 25. Inner Join Summary If |source| << |target|, nudge optimizer into picking broadcast hash join • Ensure stats are collected on join columns • Increase spark.sql.autoBroadcastJoinThreshold appropriately (default: 10MB) • Use optimizer hints (with joins, does not apply to MERGE) SELECT /*+ BROADCAST(source) */ ... 25#UnifiedAnalytics #SparkAISummit
  • 26. Next: Outer Join 26#UnifiedAnalytics #SparkAISummit Runs two joins • Inner Join – Between Source and Target – Goal: find files that need to be modified (e.g., files 2, 4, 8) • Outer Join – Between Source and subset-of-files-identified-by-Inner-Join – Goal: write out modified and unmodified data together (e.g., ”New Files”) Inner Join takes 7s Outer Join takes 32s S3 writes
  • 27. Outer Join latency tied to… …amount of data re-written (gray boxes below), S3 writes are slow 27#UnifiedAnalytics #SparkAISummit Here we’re writing 3 new files
  • 28. Let’s see the numbers… 28#UnifiedAnalytics #SparkAISummit Target table store_sales_100m • 100 million rows • Compacted into 5 parquet files of 1G each (OPTIMIZE ameet.store_sales_100m) Source table • 1000 rows • Drawn from 1, 3, and all 5 files
  • 29. Outer Join is write-bound 29#UnifiedAnalytics #SparkAISummit Key take-aways • Outer Join time is directly tied to amount of data written • Inner Join time is a small proportion of overall time and does not change as amount of data written increases 7 6 7 32 66 84 0 10 20 30 40 50 60 70 80 90 100 1x1GB 3x1GB 5x1GB Time(seconds) # of files modified Inner Join Outer Join
  • 30. MERGE creates small files 30#UnifiedAnalytics #SparkAISummit Cause: spark.sql.shuffle.partitions – default 200
  • 31. Outer Joins are faster as files get smaller 31#UnifiedAnalytics #SparkAISummit MERGE on a smaller file takes 18 seconds instead of 39! 0 20 40 60 80 100 1x36MB 1x1GB 3x1GB 5x1GB Time(seconds) # of files modified Inner Join Outer Join See first two bars
  • 32. But queries get slower with more small files 32#UnifiedAnalytics #SparkAISummit Query: select count(*) from ameet.store_sales_100m where ss_sold_time_sk=48472) “Scan” operator is at the root of most queries Same 100-million row table takes • 1 second with 5x1GB files, versus • 12 seconds with 1355 smaller files
  • 33. OPTIMIZE until now… Creates large compacted files • Default: 1GB (controlled by spark.databricks.delta.optimize.maxFileSize) • Large files great for queries, not for MERGE • Small files great for MERGE, not for queries • Complexity in controlling when and where to OPTIMIZE 33#UnifiedAnalytics #SparkAISummit
  • 34. OPTIMIZE future…is here Auto Optimize Project • Adaptive Shuffling controls # and size of files written out • Automatically triggers a faster OPTIMIZE after files are written out • Strives for 128MB files 34#UnifiedAnalytics #SparkAISummit Private Preview in DBR-5.3 https://docs.databricks.com/release-notes/runtime/5.3.html#private-preview-features
  • 36. Summary Use MERGE INTO for CDC into Delta Lakes • Unified API for Batch and Streaming • Efficient: Broadcast joins, Partition Pruning, Compaction, Optimistic Concurrency Control • Reliable: ACID guarantees on cloud storage, Schema Enforcement, S3 commit service 36#UnifiedAnalytics #SparkAISummit
  • 37. Summary (contd.) If you’re diagnosing / tuning MERGE performance • Inner Join to find files that are modified – Tip: ensure it uses broadcast hash join wherever applicable • Outer Join to write modified and unmodified files together – Latency directly tied to time to write data out to cloud storage – Tip: Consider using Auto Optimize starting DBR 5.3 37#UnifiedAnalytics #SparkAISummit
  • 38. Related Talks • (Wed 1:40pm) Productizing Structured Streaming Jobs - Burak Yavuz • (Thurs 4:40pm) Apache Spark Core – Deep Dive – Proper Optimization – Daniel Tomes • (Wed 11:00am, Thurs 4:40pm) Building Robust Production Data Pipelines with Databricks Delta – Joe Widen, Steven Yu, Burak Yavuz 38#UnifiedAnalytics #SparkAISummit