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Project Hydrogen: Unifying State-of-the-art
Big Data and AI in Apache Spark
Tim Hunter
2018-10-03
About
•Tim Hunter
•Software engineer & Solutions Architect @ Databricks
•Ph.D. from UC Berkeley in Machine Learning
•Very early Spark user
•Contributor to MLlib
•Co-author of Deep Learning Pipelines, TensorFrames and
GraphFrames
(talk co-authored with Xiangrui Meng)
Two communities: big data and AI
Significant progress has been made by both big data and AI
communities in recent years to push the cutting edge:
more complex
big data
scenarios
more complex
deep learning
scenarios
The cross?
4
Map/Reduce
CaffeOnSpark
TensorFlowOnSpark
DataFrame-based APIs
50+ Data Sources
Python/Java/R interfaces
Structured Streaming
ML Pipelines API
Continuous
Processing
RDD
Project Tungsten
Pandas UDF
TensorFrames
scikit-learn
pandas/numpy/scipy
LIBLINEAR
R
glmnet
xgboost
GraphLab
Caffe/PyTorch/MXNet
TensorFlow
Keras
Distributed
TensorFlow
Horovod
tf.data
tf.transform
AI/ML
??
TF XLA
ENIAC
AI needs big data
One cannot apply AI techniques without data. And DL models
scale with amount of data. We have seen efforts from the AI
community to handle different data scenarios:
● tf.data, tf.Transform
● spark-tensorflow-connector
● ...
source: Andrew Ng
Big data for AI
There are many efforts from the Spark community to integrate
Spark with AI/ML frameworks:
● (Yahoo) CaffeOnSpark, TensorFlowOnSpark
● (Intel) BigDL
● (John Snow Labs) Spark-NLP
● (Databricks) spark-sklearn, tensorframes, spark-deep-learning
● … 80+ ML/AI packages on spark-packages.org
The status quo: two simple stories
As a data scientist, I can:
● build a pipeline that fetches training events from a production
data warehouse and trains a DL model in parallel;
● apply a trained DL model to a distributed stream of events and
enrich it with predicted labels.
Distributed training
data warehouse load fit model
Required: Be able to read from
Databricks Delta, Parquet,
MySQL, Hive, etc.
Answer: Apache Spark
Required: distributed GPU cluster
for fast training
Answer: Horovod, Distributed
Tensorflow, etc
Databricks
Delta
Streaming model inference
Kafka load predict model
required:
● save to stream sink
● GPU for fast inference
10
Different execution models
Task 1
Task 2
Task 3
Spark
Tasks are independent of each other
Embarrassingly parallel & massively scalable
Distributed Training
Complete coordination among tasks
Optimized for communication
11
Different execution models
Task 1
Task 2
Task 3
Spark
Tasks are independent of each other
Embarrassingly parallel & massively scalable
If one crashes…
Distributed Training
Complete coordination among tasks
Optimized for communication
12
Different execution models
Task 1
Task 2
Task 3
Spark
Tasks are independent of each other
Embarrassingly parallel & massively scalable
If one crashes, rerun that one
Distributed Training
Complete coordination among tasks
Optimized for communication
If one crashes, must rerun all tasks
13
Project Hydrogen: Spark + AI
Barrier
Execution
Mode
Optimized
Data
Exchange
Accelerator
Aware
Scheduling
14
Project Hydrogen: Spark + AI
Barrier
Execution
Mode
Optimized
Data
Exchange
Accelerator
Aware
Scheduling
15
Barrier execution mode
We introduce gang scheduling to Spark on top of MapReduce
execution model. So a distributed DL job can run as a Spark job.
● It starts all tasks together.
● It provides sufficient info and tooling to run a hybrid distributed job.
● It cancels and restarts all tasks in case of failures.
Umbrella JIRA: SPARK-24374 (ETA: Spark 2.4, 3.0)
16
RDD.barrier()
RDD.barrier() tells Spark to launch the tasks together.
rdd.barrier().mapPartitions { iter =>
val context = BarrierTaskContext.get()
...
}
17
context.barrier()
context.barrier() places a global barrier and waits until all tasks in
this stage hit this barrier.
val context = BarrierTaskContext.get()
… // write partition data out
context.barrier()
18
context.getTaskInfos()
context.getTaskInfos() returns info about all tasks in this stage.
if (context.partitionId == 0) {
val addrs = context.getTaskInfos().map(_.address)
... // start a hybrid training job, e.g., via MPI
}
context.barrier() // wait until training finishes
19
Cluster manager support
YARN
SPARK-24723
Kubernetes
SPARK-24724
Mesos
SPARK-24725
In Spark standalone mode, users need passwordless SSH among
workers to run a hybrid MPI job. The community is working on the
support of other cluster managers.
20
Project Hydrogen: Spark + AI
Barrier
Execution
Mode
Optimized
Data
Exchange
Accelerator
Aware
Scheduling
21
Optimized data exchange (SPIP)
None of the integrations are possible without exchanging data
between Spark and AI frameworks. And performance matters. We
proposed using a standard interface for data exchange to simplify
the integrations without introducing much overhead.
SPIP JIRA: SPARK-24579 (pending vote, ETA 3.0)
User-Defined Functions (UDFs)
Allows executing arbitrary code, often used for integration with
ML frameworks
Example: prediction on data using TensorFlow
Row-at-a-time Data Exchange
Spark
Python UDF
1 john 4.1
2 mike 3.5
3 sally 6.4
1
john 4.1
2
2 john 4.1
Row-at-a-time Data Exchange
Spark
Python UDF
1 john 4.1
2 mike 3.5
3 sally 6.4
2 3
mike 3.5
3 mike 3.5
Row-at-a-time Data Exchange
8 Mb/s
91.8% in
data exchange!!!
Profile UDF
lambda x: x + 1
Source: Li Jin, Pandas UDF: Scalable Analysis with Python and PySpark
Vectorized Data Exchange
Spark
Python UDF
1 john 4.1
2 mike 3.5
3 sally 6.4
2
3
4
2 john 4.1
3 mike 3.5
4 sally 6.4
1
2
3
john 4.1
mike 3.5
sally 6.4
27
Vectorized computation
Though Spark uses a columnar storage format, the public user
access interface is row-based.
df.toArrowRDD.map { batches =>
... // vectorized computation
}
28
Generalize Pandas UDF to Scala/Java
Pandas UDF was introduced in Spark 2.3, which uses Arrow for
data exchange and utilizes Pandas for vectorized computation.
29
Demo
30
Project Hydrogen: Spark + AI
Barrier
Execution
Mode
Optimized
Data
Exchange
Accelerator
Aware
Scheduling
31
Accelerator-aware scheduling (SPIP)
To utilize accelerators (GPUs, FPGAs) in a heterogeneous cluster
or to utilize multiple accelerators in a multi-task node, Spark
needs to understand the accelerators installed on each node.
SPIP JIRA: SPARK-24615 (pending vote, ETA: 3.0)
32
Request accelerators
With accelerator awareness, users can specify accelerators
constraints or hints (API pending discussion):
rdd.accelerated
.by(“/gpu/p100”)
.numPerTask(2)
.required // or .optional
33
Multiple tasks on the same node
When multiples tasks are scheduled on the same node with
multiple GPUs, each task knows which GPUs are assigned to avoid
crashing into each other (API pending discussion):
// inside a task closure
val gpus = context.getAcceleratorInfos()
34
Cluster manager support
In Spark standalone mode, we can list accelerators in worker conf
and aggregate the information for scheduling. We also need to
provide support for other cluster managers:
YARN Kubernetes Mesos
35
Timeline
Spark 2.4
● barrier execution mode (basic scenarios)
● (Databricks) horovod integration w/ barrier mode
Spark 3.0
● barrier execution mode
● optimized data exchange
● accelerator-aware scheduling
36
Acknowledgement
● Many ideas in Project Hydrogen are based on previous
community work: TensorFrames, BigDL, Apache Arrow,
Pandas UDF, Spark GPU support, MPI, etc.
● We would like to thank many Spark committers and
contributors who helped the project proposal, design, and
implementation.
Thank you!

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Project Hydrogen: Unifying State-of-the-Art AI and Big Data in Apache Spark with Tim Hunter

  • 1. Project Hydrogen: Unifying State-of-the-art Big Data and AI in Apache Spark Tim Hunter 2018-10-03
  • 2. About •Tim Hunter •Software engineer & Solutions Architect @ Databricks •Ph.D. from UC Berkeley in Machine Learning •Very early Spark user •Contributor to MLlib •Co-author of Deep Learning Pipelines, TensorFrames and GraphFrames (talk co-authored with Xiangrui Meng)
  • 3. Two communities: big data and AI Significant progress has been made by both big data and AI communities in recent years to push the cutting edge: more complex big data scenarios more complex deep learning scenarios
  • 4. The cross? 4 Map/Reduce CaffeOnSpark TensorFlowOnSpark DataFrame-based APIs 50+ Data Sources Python/Java/R interfaces Structured Streaming ML Pipelines API Continuous Processing RDD Project Tungsten Pandas UDF TensorFrames scikit-learn pandas/numpy/scipy LIBLINEAR R glmnet xgboost GraphLab Caffe/PyTorch/MXNet TensorFlow Keras Distributed TensorFlow Horovod tf.data tf.transform AI/ML ?? TF XLA ENIAC
  • 5. AI needs big data One cannot apply AI techniques without data. And DL models scale with amount of data. We have seen efforts from the AI community to handle different data scenarios: ● tf.data, tf.Transform ● spark-tensorflow-connector ● ... source: Andrew Ng
  • 6. Big data for AI There are many efforts from the Spark community to integrate Spark with AI/ML frameworks: ● (Yahoo) CaffeOnSpark, TensorFlowOnSpark ● (Intel) BigDL ● (John Snow Labs) Spark-NLP ● (Databricks) spark-sklearn, tensorframes, spark-deep-learning ● … 80+ ML/AI packages on spark-packages.org
  • 7. The status quo: two simple stories As a data scientist, I can: ● build a pipeline that fetches training events from a production data warehouse and trains a DL model in parallel; ● apply a trained DL model to a distributed stream of events and enrich it with predicted labels.
  • 8. Distributed training data warehouse load fit model Required: Be able to read from Databricks Delta, Parquet, MySQL, Hive, etc. Answer: Apache Spark Required: distributed GPU cluster for fast training Answer: Horovod, Distributed Tensorflow, etc Databricks Delta
  • 9. Streaming model inference Kafka load predict model required: ● save to stream sink ● GPU for fast inference
  • 10. 10 Different execution models Task 1 Task 2 Task 3 Spark Tasks are independent of each other Embarrassingly parallel & massively scalable Distributed Training Complete coordination among tasks Optimized for communication
  • 11. 11 Different execution models Task 1 Task 2 Task 3 Spark Tasks are independent of each other Embarrassingly parallel & massively scalable If one crashes… Distributed Training Complete coordination among tasks Optimized for communication
  • 12. 12 Different execution models Task 1 Task 2 Task 3 Spark Tasks are independent of each other Embarrassingly parallel & massively scalable If one crashes, rerun that one Distributed Training Complete coordination among tasks Optimized for communication If one crashes, must rerun all tasks
  • 13. 13 Project Hydrogen: Spark + AI Barrier Execution Mode Optimized Data Exchange Accelerator Aware Scheduling
  • 14. 14 Project Hydrogen: Spark + AI Barrier Execution Mode Optimized Data Exchange Accelerator Aware Scheduling
  • 15. 15 Barrier execution mode We introduce gang scheduling to Spark on top of MapReduce execution model. So a distributed DL job can run as a Spark job. ● It starts all tasks together. ● It provides sufficient info and tooling to run a hybrid distributed job. ● It cancels and restarts all tasks in case of failures. Umbrella JIRA: SPARK-24374 (ETA: Spark 2.4, 3.0)
  • 16. 16 RDD.barrier() RDD.barrier() tells Spark to launch the tasks together. rdd.barrier().mapPartitions { iter => val context = BarrierTaskContext.get() ... }
  • 17. 17 context.barrier() context.barrier() places a global barrier and waits until all tasks in this stage hit this barrier. val context = BarrierTaskContext.get() … // write partition data out context.barrier()
  • 18. 18 context.getTaskInfos() context.getTaskInfos() returns info about all tasks in this stage. if (context.partitionId == 0) { val addrs = context.getTaskInfos().map(_.address) ... // start a hybrid training job, e.g., via MPI } context.barrier() // wait until training finishes
  • 19. 19 Cluster manager support YARN SPARK-24723 Kubernetes SPARK-24724 Mesos SPARK-24725 In Spark standalone mode, users need passwordless SSH among workers to run a hybrid MPI job. The community is working on the support of other cluster managers.
  • 20. 20 Project Hydrogen: Spark + AI Barrier Execution Mode Optimized Data Exchange Accelerator Aware Scheduling
  • 21. 21 Optimized data exchange (SPIP) None of the integrations are possible without exchanging data between Spark and AI frameworks. And performance matters. We proposed using a standard interface for data exchange to simplify the integrations without introducing much overhead. SPIP JIRA: SPARK-24579 (pending vote, ETA 3.0)
  • 22. User-Defined Functions (UDFs) Allows executing arbitrary code, often used for integration with ML frameworks Example: prediction on data using TensorFlow
  • 23. Row-at-a-time Data Exchange Spark Python UDF 1 john 4.1 2 mike 3.5 3 sally 6.4 1 john 4.1 2 2 john 4.1
  • 24. Row-at-a-time Data Exchange Spark Python UDF 1 john 4.1 2 mike 3.5 3 sally 6.4 2 3 mike 3.5 3 mike 3.5
  • 25. Row-at-a-time Data Exchange 8 Mb/s 91.8% in data exchange!!! Profile UDF lambda x: x + 1 Source: Li Jin, Pandas UDF: Scalable Analysis with Python and PySpark
  • 26. Vectorized Data Exchange Spark Python UDF 1 john 4.1 2 mike 3.5 3 sally 6.4 2 3 4 2 john 4.1 3 mike 3.5 4 sally 6.4 1 2 3 john 4.1 mike 3.5 sally 6.4
  • 27. 27 Vectorized computation Though Spark uses a columnar storage format, the public user access interface is row-based. df.toArrowRDD.map { batches => ... // vectorized computation }
  • 28. 28 Generalize Pandas UDF to Scala/Java Pandas UDF was introduced in Spark 2.3, which uses Arrow for data exchange and utilizes Pandas for vectorized computation.
  • 30. 30 Project Hydrogen: Spark + AI Barrier Execution Mode Optimized Data Exchange Accelerator Aware Scheduling
  • 31. 31 Accelerator-aware scheduling (SPIP) To utilize accelerators (GPUs, FPGAs) in a heterogeneous cluster or to utilize multiple accelerators in a multi-task node, Spark needs to understand the accelerators installed on each node. SPIP JIRA: SPARK-24615 (pending vote, ETA: 3.0)
  • 32. 32 Request accelerators With accelerator awareness, users can specify accelerators constraints or hints (API pending discussion): rdd.accelerated .by(“/gpu/p100”) .numPerTask(2) .required // or .optional
  • 33. 33 Multiple tasks on the same node When multiples tasks are scheduled on the same node with multiple GPUs, each task knows which GPUs are assigned to avoid crashing into each other (API pending discussion): // inside a task closure val gpus = context.getAcceleratorInfos()
  • 34. 34 Cluster manager support In Spark standalone mode, we can list accelerators in worker conf and aggregate the information for scheduling. We also need to provide support for other cluster managers: YARN Kubernetes Mesos
  • 35. 35 Timeline Spark 2.4 ● barrier execution mode (basic scenarios) ● (Databricks) horovod integration w/ barrier mode Spark 3.0 ● barrier execution mode ● optimized data exchange ● accelerator-aware scheduling
  • 36. 36 Acknowledgement ● Many ideas in Project Hydrogen are based on previous community work: TensorFrames, BigDL, Apache Arrow, Pandas UDF, Spark GPU support, MPI, etc. ● We would like to thank many Spark committers and contributors who helped the project proposal, design, and implementation.