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Arturo Brenes Angulo
                                     Centro de Investigaciones Agronómicas
                                                  Universidad de Costa Rica




CIP- Global Crop Diversity Trust; February 22-24, 2012, Lima, Perú
Solanum laxissimum   S. berthaultii
Costa Rica




             51 100 Km2 (0.03% of the planet’s
             surface)
             ≈ 4,2 Millions Habitants
             4% of the total species estimated
             worldwide (more than 500 000
             species )
The potato and its wild relatives;
section Tuberarium of the genus
Solanum.
by Donovan Stewart Correll 1962
According to Correll (1962), in Costa Rica existe 8 potato wild
relatives




- S. juglandifolium y S. oxycarpum of the subsectión Hyperbasarthrum
- S. canense, S. caripense, S. fraxinifolium, S. muricatum (introduced),
S. suaveolens y S. taeniotrichum of the subsección Basarthrum
Collecting, conservation ,characterization and use of the potato wild relatives
                              from Costa Rica
Solanum woodsonii
Solanum longiconicum
Solanum taenotrichium
Solanum canense
Solanum caripense
Solanum fraxinifolium
Wild Potato Relatives collected in Costa Rica

                    Species                         No of
                                                  accessions
Solanum canense Ruydb.:                               2
Solanum caripense Humb.&Bonpl.Ex.Dun.:                  10
Solanum fraxinifolium Dunal in DC:                      7
Solanum longiconicum Bitter                             12
Solanum taenotrichum Corr.:                             3
Solanum woodsonii Corr.:                                11
                                          Total         45
Leafminer (Liriomyza spp.)
Source: www.ecohuellas.files.wordpress.com/.../sequia1.jpg
Phenotyping for Drought Stress
Chromosome                                                                                   Chromosome
  Number                  PCR Marker                           Resistance to                   Number        PCR Marker                Resistance to
     I       CP108                        E. carotovora ssp. atroseptica                         VIII     ND                Rpi-blb1, P.infestans
     II      GP23                         E. carotovora ssp. atroseptica                         VIII     ND                Osm8,
    III      GP1 (a)                      P.infestans                                            VI       ND                Rpi-blb2, P.infestans
    III      GP25 SSCP/TaqI (CAPS) Taq1   PVY, P.infestans                                       IV       ND                Rpi-blb3, P.infestans
    III      Ssp8                         Gro1.4, G. rostochiensis                               IX       GP94 (SSCP-Hinf I/Dpn I?
                                                                                                                            Rpi-phu1, P.infestans
    III      GP276                        P.infestans                                            IX       Prp1              Prp1, PRP, P.infestans
    IV       Stm3016                      Gpa4, G. pallida, P. infestans                         IX       InvGF-4d          Tuber starch
    IX       Gp6                          QTL for G. pallida                                     IX       InvGF-4b          Chip color
     V       BA47f2                       P.infestans                                            XI       GP250             R3, R6, R7, P. infestans
     V       CM1                          H1, G. rostochiensis                                   XI       NL25 (SSCP)       Sen1, Sinchrytium endobioticum
     V       CosA                         P.infestans                                            XI       NL27 (3 and 5, Borman et al, 2003)
                                                                                                                            PLRV.1, PLRV
     V       CP113                        HI, G.rostochiensis                                    XI       NL27 SCAR (Marzewski et al, 2001)
                                                                                                                            PLRV.1, PLRV
     V       R1general                    P.infestans                                            XI       RYSC3 (SCAR)      Ryadg, PVY
     V       R1specific                   P.infestans                                            XI       CP58              Ryadg, Rysto, PVY, Sen1
             Ssp72                                                                                        GP125 (CAPS)
                                                                                                          Taq1
    V                                     G.pallida                                              XI                         PVY,Sen1, P.infestans,
    V        TG69                         Gro VI , G.rostochiensis                               XI       TG523             Rysto,Na adg,RMc1,
             GP21                         R1, Rx2, NB, Gpa,GPa5, Grp1,P. infestans, PVX,G.                Ssp75
    V                                     pallida, G. rostochiensis                              XI                         Gro1.3, G.rostochiensis
             GP179                        R1,GPa5, Grp1,P. infestans, PVX,G. pallida,G.                   TG30
    V                                     rostochiensis                                          XI                         Gro1.3, G.rostochiensis
             GP76                                                                                         GP185             R3, R6, R7, P. infestans ,
   VI                                     P. infestans                                          XI                          E.carotovora ssp. atroseptica
   VI        GP79                         P. infestans                                          XI                          Osm11,
   VI        St3.3.13                     E. carotovora ssp. atroseptica                        XI        TG105(a)          R3 P.infestans
   VII       CP56                         Gro 1, G. rostochiensis                               XII       CP60 (CAPs)       Rx1, PVX, P. infestans
   VII       gro1-11p41                   Gro 1, G. rostochiensis                               XII       GP122             PVY
             gro1-2p40 (ASO)                                                                                                Rx1, PVX, P. infestans, GPa2,
   VII                                    Gro 1, G. rostochiensis                               XII       GP34 (ASO)        G.pallida
   VII       Gro1-4                       Gro1, G.pallida                                       X         TG63              Rber, P. infestans
   VII       GP219                        E. carotovora ssp. atroseptica                        XII                         PR-5 PRP
   VIII      RC5t7                        Osm8, PRP                                              V        CT51 (CAPS)      H1, G. rostochiensis
   VIII      SC811                        Ns, PVS                                                V        239E4left (CAPS) H1, G. rostochiensis
   VIII      Osm                          P.infestans                                           VIII                       Rpi-blb1 , P.infestans
   VIII      CP53                         Rblc P.infestans                                      VI                         Rpi-blb2 , P.infestans
                                                                                                IV        Th21 (SCAR)      Rpi-blb3 , P.infestans
Figura 1. Amplificación de fragmentos en especies silvestres de papa de Costa Rica con imprimadores específicos para genes ligados
con resistencia a G. rostochiensis en papa cultivada. M= 100 bp DNA Ladder Plus (Fermentas), C= variedad de papa control P6-210,
17-62 = diferentes accesiones de papa silvestre de Costa Rica.
Marcador 239E4left. M: Marcador de peso molecular 100pb. Muestras 1-16 accesiones de papa silvestre, 1: 146, 2:160 3:
134, 4: 147, 5: 130, 6:157, 7:121, 8:127, 9:135, 10: 148, 11:118, 12:150, 13:151, 14:152.
Marcador GP179. M: Marcador de peso molecular 100pb. Muestras 1-16 accesiones de papa silvestre, 1: 146, 2:160 3: 134, 4:
147, 5: 130, 6:157, 7:121, 8:127, 9:135, 10: 148, 11:118, 12:150, 13:151, 14:152.
El marcador GP179 (550pb) se ha relacionado con el QTL GpaV (de resistencia a G. pallida) y con el QTL Grp1 de amplio
espectro para G. pallida y G. rostochiensis (Meksem et al.1995).
Thanks for your attention

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Arturo Brenes' presentation in the framework of the expert consultation on the use of crop wild relatives for pre-breeding in potato

  • 1. Arturo Brenes Angulo Centro de Investigaciones Agronómicas Universidad de Costa Rica CIP- Global Crop Diversity Trust; February 22-24, 2012, Lima, Perú
  • 2. Solanum laxissimum S. berthaultii
  • 3. Costa Rica 51 100 Km2 (0.03% of the planet’s surface) ≈ 4,2 Millions Habitants 4% of the total species estimated worldwide (more than 500 000 species )
  • 4.
  • 5. The potato and its wild relatives; section Tuberarium of the genus Solanum. by Donovan Stewart Correll 1962
  • 6.
  • 7. According to Correll (1962), in Costa Rica existe 8 potato wild relatives - S. juglandifolium y S. oxycarpum of the subsectión Hyperbasarthrum - S. canense, S. caripense, S. fraxinifolium, S. muricatum (introduced), S. suaveolens y S. taeniotrichum of the subsección Basarthrum
  • 8.
  • 9. Collecting, conservation ,characterization and use of the potato wild relatives from Costa Rica
  • 10.
  • 11.
  • 12.
  • 13.
  • 14.
  • 21. Wild Potato Relatives collected in Costa Rica Species No of accessions Solanum canense Ruydb.: 2 Solanum caripense Humb.&Bonpl.Ex.Dun.: 10 Solanum fraxinifolium Dunal in DC: 7 Solanum longiconicum Bitter 12 Solanum taenotrichum Corr.: 3 Solanum woodsonii Corr.: 11 Total 45
  • 22.
  • 23.
  • 24.
  • 25.
  • 27.
  • 28.
  • 30.
  • 31.
  • 32.
  • 33.
  • 34.
  • 35.
  • 37.
  • 38. Chromosome Chromosome Number PCR Marker Resistance to Number PCR Marker Resistance to I CP108 E. carotovora ssp. atroseptica VIII ND Rpi-blb1, P.infestans II GP23 E. carotovora ssp. atroseptica VIII ND Osm8, III GP1 (a) P.infestans VI ND Rpi-blb2, P.infestans III GP25 SSCP/TaqI (CAPS) Taq1 PVY, P.infestans IV ND Rpi-blb3, P.infestans III Ssp8 Gro1.4, G. rostochiensis IX GP94 (SSCP-Hinf I/Dpn I? Rpi-phu1, P.infestans III GP276 P.infestans IX Prp1 Prp1, PRP, P.infestans IV Stm3016 Gpa4, G. pallida, P. infestans IX InvGF-4d Tuber starch IX Gp6 QTL for G. pallida IX InvGF-4b Chip color V BA47f2 P.infestans XI GP250 R3, R6, R7, P. infestans V CM1 H1, G. rostochiensis XI NL25 (SSCP) Sen1, Sinchrytium endobioticum V CosA P.infestans XI NL27 (3 and 5, Borman et al, 2003) PLRV.1, PLRV V CP113 HI, G.rostochiensis XI NL27 SCAR (Marzewski et al, 2001) PLRV.1, PLRV V R1general P.infestans XI RYSC3 (SCAR) Ryadg, PVY V R1specific P.infestans XI CP58 Ryadg, Rysto, PVY, Sen1 Ssp72 GP125 (CAPS) Taq1 V G.pallida XI PVY,Sen1, P.infestans, V TG69 Gro VI , G.rostochiensis XI TG523 Rysto,Na adg,RMc1, GP21 R1, Rx2, NB, Gpa,GPa5, Grp1,P. infestans, PVX,G. Ssp75 V pallida, G. rostochiensis XI Gro1.3, G.rostochiensis GP179 R1,GPa5, Grp1,P. infestans, PVX,G. pallida,G. TG30 V rostochiensis XI Gro1.3, G.rostochiensis GP76 GP185 R3, R6, R7, P. infestans , VI P. infestans XI E.carotovora ssp. atroseptica VI GP79 P. infestans XI Osm11, VI St3.3.13 E. carotovora ssp. atroseptica XI TG105(a) R3 P.infestans VII CP56 Gro 1, G. rostochiensis XII CP60 (CAPs) Rx1, PVX, P. infestans VII gro1-11p41 Gro 1, G. rostochiensis XII GP122 PVY gro1-2p40 (ASO) Rx1, PVX, P. infestans, GPa2, VII Gro 1, G. rostochiensis XII GP34 (ASO) G.pallida VII Gro1-4 Gro1, G.pallida X TG63 Rber, P. infestans VII GP219 E. carotovora ssp. atroseptica XII PR-5 PRP VIII RC5t7 Osm8, PRP V CT51 (CAPS) H1, G. rostochiensis VIII SC811 Ns, PVS V 239E4left (CAPS) H1, G. rostochiensis VIII Osm P.infestans VIII Rpi-blb1 , P.infestans VIII CP53 Rblc P.infestans VI Rpi-blb2 , P.infestans IV Th21 (SCAR) Rpi-blb3 , P.infestans
  • 39. Figura 1. Amplificación de fragmentos en especies silvestres de papa de Costa Rica con imprimadores específicos para genes ligados con resistencia a G. rostochiensis en papa cultivada. M= 100 bp DNA Ladder Plus (Fermentas), C= variedad de papa control P6-210, 17-62 = diferentes accesiones de papa silvestre de Costa Rica.
  • 40. Marcador 239E4left. M: Marcador de peso molecular 100pb. Muestras 1-16 accesiones de papa silvestre, 1: 146, 2:160 3: 134, 4: 147, 5: 130, 6:157, 7:121, 8:127, 9:135, 10: 148, 11:118, 12:150, 13:151, 14:152.
  • 41. Marcador GP179. M: Marcador de peso molecular 100pb. Muestras 1-16 accesiones de papa silvestre, 1: 146, 2:160 3: 134, 4: 147, 5: 130, 6:157, 7:121, 8:127, 9:135, 10: 148, 11:118, 12:150, 13:151, 14:152. El marcador GP179 (550pb) se ha relacionado con el QTL GpaV (de resistencia a G. pallida) y con el QTL Grp1 de amplio espectro para G. pallida y G. rostochiensis (Meksem et al.1995).
  • 42.
  • 43. Thanks for your attention