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Data Flow and Contents
 in EOL China Center

 EOL China Regional Center
 Biodiversity Committee, CAS
        March 9, 2012
Implementation of
                   EOL China data system


         Web service      EOL-China Portal         Web service




                                     Web service

EOL-China Animal                                   EOL-China Microbial




                         EOL-China Plant
Structure of management and
            service in EOL China

 System manager
                                EOL-China Portal                     Public

                                         Web service



    Curator,
  Data manager       Disciplinary Databases and websites             Public
                                          Data import in xml files
 EOL China service system                 in Bisby Core format



  taxonomists
(data provider)              Species databases of taxa
Data flow of Animal Database
                                                  Import in xml



                           Animal database                        CoL China
         harvesting                                  harvesting




                                      harvesting

Chinese Mammal database                            Chinese spider database




                          Chinese bird database
Data flow of Plant Database
                                                    Import in xml



                              Plant database                         CoL China
         harvesting                                     harvesting



                                               harvesting

                              harvesting

Chinese Virtual Herbarium                             Plant photo database




           Chinese high plant database     Chinese Nature Museum
Procedure of data collection for EOL
          China databases
  EOL        Xml files
                                    CoL China
 China     (Bisby Core)             database
database

                                      Bird
                                    database


                          Species   Mammal
                           data     database
                          manage
                           ment
                          system
                                     Spider
                                    database
Components of Bisby Core
   There are 5 components in a Bisby Core
    standard document:
       The taxonomic tree component: describe the
        information of a taxonomic tree, such as the
        name of the tree, the author of tree, etc.
       The taxon information component: describe the
        taxonomic relevant data of taxon;
       The data object component: describes attributes
        of taxon in text and/or multimedia format;
       The reference component: describe information
        about references;
       The people component: describe information of
        expert who make scrutiny.
Data Source of EOL China
   All species data in EOL China are from
    species databases of animal, plant and
    microbial building up by Institute of
    Zoology, Institute of Botany and Institute of
    Microbiology, CAS, which collect data from
    monographs, scientific papers, website and
    reviewed by taxonomists. The names of
    taxonomists are listed in the species pages
    as an object of the species.
   The copyright information are attached with
    the object data as in EOL website.
Portal of EOL China
Animal website of EOL Chin
Plant website of EOL China
Microbial website of EOL Chi
Statistics for contents in EOL-China

                    Total    Rich    Text    Only   Only
                    pages   pages   pages   images names
  Animal
  (Mammalia,        9909    2237    1722     52    5898
Aves , Arachnida)

    Plant
(Gymnospermae,      10003   2891      0     4505   2607
  Orchidaceae)
 Microbial
(Ganodermatace      2259    1873     386      0      0
 ae, Tremellales,
  Polyporaceae)


     total          22171   7001    2108    4557   8505
Example of rich pages
   http://animal.eolchina.org/pages/10581
   http://animal.eolchina.org/pages/10406
   http://animal.eolchina.org/pages/10435
   http://animal.eolchina.org/pages/7060
Content development
Building up new species data in Chinese by taxonomists
 Next year

       Animal: fish, butterfly – 600 species
       Plant: Gymnospermae, Orchidaceae – 2000 species
       Microbial:
        Boletaceae, Laboulbeniales, Geastraceae, Nidulariales, C
        yanophyta, Meliolales, Uredinales, Aspergillus
        – 1000 species
   Next 2 years
       Animal: amphibian, butterfly – 800 species
       Plant: important plant – 3000 species
       Microbial:
        Boletaceae, Laboulbeniales, Geastraceae, Nidulariales, C
        yanophyta – 1000 species
   High rank taxa data, genus, family, order, ……

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EOL China Center status

  • 1. Data Flow and Contents in EOL China Center EOL China Regional Center Biodiversity Committee, CAS March 9, 2012
  • 2. Implementation of EOL China data system Web service EOL-China Portal Web service Web service EOL-China Animal EOL-China Microbial EOL-China Plant
  • 3. Structure of management and service in EOL China System manager EOL-China Portal Public Web service Curator, Data manager Disciplinary Databases and websites Public Data import in xml files EOL China service system in Bisby Core format taxonomists (data provider) Species databases of taxa
  • 4. Data flow of Animal Database Import in xml Animal database CoL China harvesting harvesting harvesting Chinese Mammal database Chinese spider database Chinese bird database
  • 5. Data flow of Plant Database Import in xml Plant database CoL China harvesting harvesting harvesting harvesting Chinese Virtual Herbarium Plant photo database Chinese high plant database Chinese Nature Museum
  • 6. Procedure of data collection for EOL China databases EOL Xml files CoL China China (Bisby Core) database database Bird database Species Mammal data database manage ment system Spider database
  • 7. Components of Bisby Core  There are 5 components in a Bisby Core standard document:  The taxonomic tree component: describe the information of a taxonomic tree, such as the name of the tree, the author of tree, etc.  The taxon information component: describe the taxonomic relevant data of taxon;  The data object component: describes attributes of taxon in text and/or multimedia format;  The reference component: describe information about references;  The people component: describe information of expert who make scrutiny.
  • 8. Data Source of EOL China  All species data in EOL China are from species databases of animal, plant and microbial building up by Institute of Zoology, Institute of Botany and Institute of Microbiology, CAS, which collect data from monographs, scientific papers, website and reviewed by taxonomists. The names of taxonomists are listed in the species pages as an object of the species.  The copyright information are attached with the object data as in EOL website.
  • 10. Animal website of EOL Chin
  • 11. Plant website of EOL China
  • 13. Statistics for contents in EOL-China Total Rich Text Only Only pages pages pages images names Animal (Mammalia, 9909 2237 1722 52 5898 Aves , Arachnida) Plant (Gymnospermae, 10003 2891 0 4505 2607 Orchidaceae) Microbial (Ganodermatace 2259 1873 386 0 0 ae, Tremellales, Polyporaceae) total 22171 7001 2108 4557 8505
  • 14. Example of rich pages  http://animal.eolchina.org/pages/10581  http://animal.eolchina.org/pages/10406  http://animal.eolchina.org/pages/10435  http://animal.eolchina.org/pages/7060
  • 15. Content development Building up new species data in Chinese by taxonomists  Next year  Animal: fish, butterfly – 600 species  Plant: Gymnospermae, Orchidaceae – 2000 species  Microbial: Boletaceae, Laboulbeniales, Geastraceae, Nidulariales, C yanophyta, Meliolales, Uredinales, Aspergillus – 1000 species  Next 2 years  Animal: amphibian, butterfly – 800 species  Plant: important plant – 3000 species  Microbial: Boletaceae, Laboulbeniales, Geastraceae, Nidulariales, C yanophyta – 1000 species  High rank taxa data, genus, family, order, ……