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NAEJA Pharmaceutical Inc.
            North America, Europe, Japan, Asia
Drug discovery Contract Research Organization (CRO)
Previously SynPhar (1987‐1999)
Privately owned
63,000 ft2 facility
Based in Edmonton, Canada
NAEJA Pharmaceutical Inc.
                    Client Base (2008‐2009)*


                      Biotech     Large 
                                 Pharma
Japan

                                                        US
                                       Longest collaboration
        Europe
                                                    12 years
 Longest contract
          4 years                                              *(% revenue)
NAEJA’s Role in                           – Infrastructure
Drug Discovery                            – Expertise
                                          – Experience

                   Design     Synthesis

     HIT                                      CANDIDATE



                   Analysis     Test
Computational 
    Chemistry                Infrastructure:
Molecular modeling/QSAR
 Survey chemical space
Target libraries: defined 
  physical properties
                             Design     Synthesis




                             Analysis     Test
Computational Chemistry

•   Hit Discovery:
     – ligand docking
     – pharmacophore generation

•   Lead Optimization: 
     – ligand docking
     – QSAR

•   Physical Properties: 
     – pKa, log P, log D, & solubility
Medicinal Chemistry      Infrastructure:
     Review TPP
     Review SAR

 Experience in design:
 ADME/DMPK/toxicity 
                         Design     Synthesis




                         Analysis     Test
Staffing Chemistry: 71% 
 Director              Biology: 7%
  100% PhDs            Analytical: 5% 
                       Admin: 17%

  Project     PhDs & Postdocs by Training Location
Coordinator
  100% PhDs
                                                     Canada
                                                     US
                                                     Europe
 Scientist                                           Asia
  90% PhDs                                           Japan
PhDs & Postdoc Training of NAEJA Scientists
Synthetic Chemistry
Infrastructure:          Over 60 Ph.D. Chemists
                        Reactions up to 22L scale

                       Access to SciFinder, Reaxys
                       Access to NMR, MS, LC‐MS, 
                        analytical and prep HPLC
 Design    Synthesis




Analysis      Test
Analytical & Purification Support
            Purification                           Analytical
– Prep HPLC                              – Chiral HPLC
   – Automated prep LC‐MS                    – CHIRALPAK™ AD, AD‐RH, OD, OD‐R, 
   – Routine scale 100‐500 mg                  OF, OB, OJ

– Semi‐prep NP/chiral                    – LC‐MS
   – Routine scale 50‐100 mg
                                         – Elemental analysis, IR, & optical 
– Biotage                                  rotations
   – Routine NP/RP
   – Specialty columns also available        1H NMR
     e.g. alumina, cyano, ion‐exchange   –
                                             – 2 × 400 MHz
Infrastructure:


 Design    Synthesis




                       Biological Services
Analysis    Test          Microbiology
                              DMPK
                          Pharmacology
                             Toxicity
Select Organism Microbiology
Select Organism Microbiology
– Time‐kill studies
 – Time‐kill studies
– Post antibiotic effect (PAE) studies
 – Post antibiotic effect (PAE) studies
                                                                        Microbiology, DMPK
– Frequency of resistance
 – Frequency of resistance
                                      Rodent in vivo Efficacy
                                      Rodent in vivo Efficacy                     & Toxicity
                                          –
                                        Superficial skin infection
                                           –
                                         Superficial skin infection
                                          –
                                        Pneumonia
                                           –
                                         Pneumonia
Primary MIC Panel
Primary MIC Panel                         –
                                        Septicemia
                                           –
                                         Septicemia
– NCCL procedures
 – NCCL procedures                        –
                                        Sepsis
                                                                 In vitro PK
                                                                  In vitro PK
                                           –
                                         Sepsis
– Gram +ve and –ve
 – Gram +ve and –ve                       –
                                        Thigh infection
                                           –
                                         Thigh infection
                                                                   – Physicochemical 
                                                                    – Physicochemical         In vitro Toxicity
                                                                                               In vitro Toxicity
– Anaerobes                                                           properties
                                                                       properties             – hERG
 – Anaerobes                                                                                   – hERG
– Fungi
 – Fungi          Secondary Panel
                   Secondary Panel                                 – Chemical & metabolic 
                                                                    – Chemical & metabolic    – CYP 450 panel
                                                                                               – CYP 450 panel
                                                                      Stability
                                                                       Stability
                   – MIC90’s
                    – MIC90’s                                                                 In vivo Safety and PK
                                                                                               In vivo Safety and PK
                   – > 4000 clinical isolates
                    – > 4000 clinical isolates                                                – Acute/sub acute dosing
                                                                                               – Acute/sub acute dosing
                   – Includes 2009 strains
                    – Includes 2009 strains                                                   – Cmax, Tmax, Vdd, t½, AUC, %F
                                                                                               – Cmax, Tmax, V , t½, AUC, %F




           Hit                                                                                      Candidate
In vivo Pharmacology Models
Septicemia                                      Pneumonia
     –   Staphylococcus aureus MRSA                 – Streptococcus pneumoniae
     –   Staphylococcus Aureus MSSA
                                                    – Aspergillus fumigatus
     –   Candida albicans
     –   Aspergillus fumigatus                  Sepsis
Thigh infections
                                                    – Staphylococcus aureus MRSA
     –   Staphylococcus aureus MRSA                 – Staphylococcus aureus MSSA
     –   Staphylococcus aureus MSSA
                                                    – Escherichia coli
     –   Streptococcus pneumoniae
     –   Escherichia coli                       Superficial skin infection
Animal Facilities (CCAC):  Level II biohazard       – Staphylococcus aureus MSSA
Pharmacokinetics
             in vitro                           in vivo
– Aqueous solubility                  –   Bioavailability studies
– Partition coefficients              –   Blood/plasma concentrations
– Plasma protein binding              –   Tissue concentration/distribution
– A‐B permeability (MDCK)             –   Metabolite profiling
– Metabolic stability (microsomes, 
  hepatocytes)
– UPLC‐MS‐MS screening                Animal facilities adhere to CCAC
Infrastructure:


                            Design    Synthesis



Scientific Support

 Internal: Directors
 Minimum industrial        Analysis     Test
experience – 15 years
 External: Consultants 
Specific TAs/disciplines
NAEJA’s Role in                           – Infrastructure
Drug Discovery                            – Expertise
                                          – Experience

                   Design     Synthesis

     HIT                                      CANDIDATE



                   Analysis     Test
Anti‐infectives:
    Tazobactam             Track Record:
  β‐Lactamase Inhibitor
Collaboration with Taiho
Marketed by Wyeth/Pfizer
                           Design     Synthesis




                           Analysis     Test
Anti‐infectives:
     SYN‐2190                Track Record:
        Licensed: 
Anti‐infective Diagnostics
    WO 2009/051838

                             Design     Synthesis




                             Analysis     Test
Mofezolac (Disopain™)      Track Record:
   Commercial NSAID
Collaboration with Taiho
Marketed by Mitsubishi

                           Design     Synthesis




                           Analysis     Test
Published TAs:

Track Record:             Anti‐Infectives:
                          Topoisomerases
                             DNA gyrase
                            β‐Lactamases
                           Histidine kinase
                         PPB3, PDK, LeuRS
Design     Synthesis   Efflux pump inhibitors




Analysis      Test
Cardiovascular Targets:
Track Record:           Antihypertensives ‐ Renin
                        Anticoagulants ‐ Factor Xa

                                  Cancer:
                       Cyclin‐dependant kinase Cdk4

Design     Synthesis         Dermatology:
                           Androgen receptors

                                   CNS:
                            NRI’s and 5‐HT1A 

                             Inflammation:
Analysis      Test         TNF‐α, IL‐23, & PDE4
Track Record:


Design     Synthesis


                           Recent Publications:

                              MIC screening
                         Bioorg. Med. Chem. Lett.
Analysis    Test       2009, 19, 1292, 3374, & 4626

                           ICAAC 2009 Poster:

                             Efficacy study: 
                            MRSA mouse skin 
                             infection model
Track Record:


                           Design    Synthesis


Scientific Support

Internal: Sr. Directors
 Medicinal Chemistry
                          Analysis     Test
Dr Rajeshwar Singh
 52 papers; 46 patents

    Dr S. N. Maiti
 58 papers, 15 patents
Papers and Patents
   238 in total
                     Track Record:


   Antiinfectives     Design    Synthesis
   Antifungals
   CV
   Cancer
   Inflammation
   Mental Health
   COPD              Analysis     Test
   Auto Immune
   Synthesis
   Analytical
Track Record:


                                 Design    Synthesis


External Consultants
  Dr John Domagala
Senior Consultant with IDSC 
     Previous position:         Analysis     Test
 Executive Director at Pfizer

 Prof. Mike James FRS
   University of Alberta
Crystallography & Modeling
NAEJA’s Role in                           – Infrastructure
                                          – Expertise
Drug Discovery
                                          – Experience

                   Design     Synthesis

     HIT                                      CANDIDATE



                   Analysis     Test
Single Client – Concurrent Anti‐infectives
                 & Inflammation Programs




                                                 Candidate
 Hit Generation    Hit to Lead       Lead 
 and Validation                   Optimization
 NAEJA                                                       CLIENT                  Phase 2

                                                                                    Phase 3


One program
              {                                                 On hold: biological liability

                                                                             Phase 1: 2009

                                                                Candidate selection: 2009

                                                                    Lead declaration: 2009
Other Successful Recent Programs




                                                 Candidate
Hit Generation     Hit to Lead       Lead 
and Validation                    Optimization

 NAEJA                                                       Phase 1b/2: Cardiovascular disease

                                                             Clinical trials: Pain management

                                                             Clinical trials: anti‐bacterial

                                                             Clinical trials: anti‐fungal

                                                             Alzheimer's program

                                                             Anti‐viral program
Project starts: Q1
Project starts: Q1                                    Q1: Validated
                                                      Q1: Validated
                                                      thigh model
                                                                             Q3: Pre‐candidate 
                                                                             Q3: Pre‐candidate 
                                                                              #1 put on hold: 
                                                                                                    CASE STUDY
Hit structure: narrow activity spectrum
 Hit structure: narrow activity spectrum               thigh model             #1 put on hold: 
Racemic
 Racemic                                                                     biological liability
                                                                             biological liability   Anti‐infective Program
Limited SAR
 Limited SAR                                                   Q1: ½ Kg
                                                                                                        = NAEJA
                                                               Q1: ½ Kg
Undeveloped chemistry: unusual scaffold
 Undeveloped chemistry: unusual scaffold                    pre‐candidate 
                                                            pre‐candidate                               = CLIENT
No crystal structure
 No crystal structure                                        synthesized
                                                              synthesized

 Q1: Chemistry development, SAR, MIC panel
 Q1: Chemistry development, SAR, MIC panel


            Q1 to Q4 2009
            Q1 to Q4 2009            Q4: Racemic
                                     Q4: Racemic            Q1: Process development
                                                            Q1: Process development
            Biochemistry
             Biochemistry         lead #1 declared
                                   lead #1 declared                                                   Candidate declaration
                                                                                                      Candidate declaration
                                                                                                          >98% purity
                                                                                                           >98% purity
                          Q3: Molecular modeling & SBDD
                          Q3: Molecular modeling & SBDD                      Q2: chiral HPLC
                                                                             Q2: chiral HPLC              >98% eefffff
                                                                                                           >98% eefffff
                   Q3: Crystal 
                   Q3: Crystal             Q1: Racemic lead 
                                           Q1: Racemic lead 
                    structure
                     structure               #2 declared
                                              #2 declared        Q1: ADME
                                                                 Q1: ADME




             2007                                           2008                                          2009
NAEJA Business Models


Compound based               Program based 
fee‐for‐service              Drug discovery

Custom Synthesis             FTE R&D Service
Discovery Biology
NAEJA Packages:
Compound based 
fee‐for‐service                    Design     Synthesis



– Short term
– Fixed deliverables               Analysis     Test
– All materials & labor included
– Literature searches included
– Client owns 100% of the IP
Program Research:
FTE based R&D Service
– Staffing
     – 1 computational chemist
     – 5 synthetic/medicinal chemists
     – 1‐2 biologists                   Design     Synthesis

– Time frame
     – 6‐12 months lead generation
     – 1‐2 years lead optimization

– Client owns 100% of the IP            Analysis     Test

– Included in FTE price
      – Consumables
      – Literature/patent searching
      – Waste disposal
Contact Information

Dr. Sameeh Salama
Senior Director, 
Business Development


Dr. Chris Diaper 
Business Development 
Associate


NAEJA Pharmaceutical Inc.
4290‐91A Street, Edmonton
Alberta, Canada. 
T6E 5V2
Tel: (780) 462‐4044
Fax: (780) 461‐0196
E‐mail: info@naeja.com

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NAEJA Presentation

  • 1.
  • 2. NAEJA Pharmaceutical Inc. North America, Europe, Japan, Asia Drug discovery Contract Research Organization (CRO) Previously SynPhar (1987‐1999) Privately owned 63,000 ft2 facility Based in Edmonton, Canada
  • 3. NAEJA Pharmaceutical Inc. Client Base (2008‐2009)* Biotech Large  Pharma Japan US Longest collaboration Europe 12 years Longest contract 4 years *(% revenue)
  • 4. NAEJA’s Role in  – Infrastructure Drug Discovery – Expertise – Experience Design Synthesis HIT CANDIDATE Analysis Test
  • 5. Computational  Chemistry Infrastructure: Molecular modeling/QSAR Survey chemical space Target libraries: defined  physical properties Design Synthesis Analysis Test
  • 6. Computational Chemistry • Hit Discovery: – ligand docking – pharmacophore generation • Lead Optimization:  – ligand docking – QSAR • Physical Properties:  – pKa, log P, log D, & solubility
  • 7. Medicinal Chemistry Infrastructure: Review TPP Review SAR Experience in design: ADME/DMPK/toxicity  Design Synthesis Analysis Test
  • 8. Staffing Chemistry: 71%  Director Biology: 7% 100% PhDs Analytical: 5%  Admin: 17% Project PhDs & Postdocs by Training Location Coordinator 100% PhDs Canada US Europe Scientist Asia 90% PhDs Japan
  • 10. Synthetic Chemistry Infrastructure: Over 60 Ph.D. Chemists Reactions up to 22L scale Access to SciFinder, Reaxys Access to NMR, MS, LC‐MS,  analytical and prep HPLC Design Synthesis Analysis Test
  • 11. Analytical & Purification Support Purification Analytical – Prep HPLC – Chiral HPLC – Automated prep LC‐MS – CHIRALPAK™ AD, AD‐RH, OD, OD‐R,  – Routine scale 100‐500 mg OF, OB, OJ – Semi‐prep NP/chiral – LC‐MS – Routine scale 50‐100 mg – Elemental analysis, IR, & optical  – Biotage rotations – Routine NP/RP – Specialty columns also available 1H NMR e.g. alumina, cyano, ion‐exchange – – 2 × 400 MHz
  • 12. Infrastructure: Design Synthesis Biological Services Analysis Test Microbiology DMPK Pharmacology Toxicity
  • 13. Select Organism Microbiology Select Organism Microbiology – Time‐kill studies – Time‐kill studies – Post antibiotic effect (PAE) studies – Post antibiotic effect (PAE) studies Microbiology, DMPK – Frequency of resistance – Frequency of resistance Rodent in vivo Efficacy Rodent in vivo Efficacy & Toxicity – Superficial skin infection – Superficial skin infection – Pneumonia – Pneumonia Primary MIC Panel Primary MIC Panel – Septicemia – Septicemia – NCCL procedures – NCCL procedures – Sepsis In vitro PK In vitro PK – Sepsis – Gram +ve and –ve – Gram +ve and –ve – Thigh infection – Thigh infection – Physicochemical  – Physicochemical  In vitro Toxicity In vitro Toxicity – Anaerobes properties properties – hERG – Anaerobes – hERG – Fungi – Fungi Secondary Panel Secondary Panel – Chemical & metabolic  – Chemical & metabolic  – CYP 450 panel – CYP 450 panel Stability Stability – MIC90’s – MIC90’s In vivo Safety and PK In vivo Safety and PK – > 4000 clinical isolates – > 4000 clinical isolates – Acute/sub acute dosing – Acute/sub acute dosing – Includes 2009 strains – Includes 2009 strains – Cmax, Tmax, Vdd, t½, AUC, %F – Cmax, Tmax, V , t½, AUC, %F Hit Candidate
  • 14. In vivo Pharmacology Models Septicemia Pneumonia – Staphylococcus aureus MRSA – Streptococcus pneumoniae – Staphylococcus Aureus MSSA – Aspergillus fumigatus – Candida albicans – Aspergillus fumigatus Sepsis Thigh infections – Staphylococcus aureus MRSA – Staphylococcus aureus MRSA – Staphylococcus aureus MSSA – Staphylococcus aureus MSSA – Escherichia coli – Streptococcus pneumoniae – Escherichia coli Superficial skin infection Animal Facilities (CCAC):  Level II biohazard – Staphylococcus aureus MSSA
  • 15. Pharmacokinetics in vitro in vivo – Aqueous solubility – Bioavailability studies – Partition coefficients – Blood/plasma concentrations – Plasma protein binding – Tissue concentration/distribution – A‐B permeability (MDCK) – Metabolite profiling – Metabolic stability (microsomes,  hepatocytes) – UPLC‐MS‐MS screening Animal facilities adhere to CCAC
  • 16. Infrastructure: Design Synthesis Scientific Support Internal: Directors Minimum industrial  Analysis Test experience – 15 years External: Consultants  Specific TAs/disciplines
  • 17. NAEJA’s Role in  – Infrastructure Drug Discovery – Expertise – Experience Design Synthesis HIT CANDIDATE Analysis Test
  • 18. Anti‐infectives: Tazobactam Track Record: β‐Lactamase Inhibitor Collaboration with Taiho Marketed by Wyeth/Pfizer Design Synthesis Analysis Test
  • 19. Anti‐infectives: SYN‐2190 Track Record: Licensed:  Anti‐infective Diagnostics WO 2009/051838 Design Synthesis Analysis Test
  • 20. Mofezolac (Disopain™) Track Record: Commercial NSAID Collaboration with Taiho Marketed by Mitsubishi Design Synthesis Analysis Test
  • 21. Published TAs: Track Record: Anti‐Infectives: Topoisomerases DNA gyrase β‐Lactamases Histidine kinase PPB3, PDK, LeuRS Design Synthesis Efflux pump inhibitors Analysis Test
  • 22. Cardiovascular Targets: Track Record: Antihypertensives ‐ Renin Anticoagulants ‐ Factor Xa Cancer: Cyclin‐dependant kinase Cdk4 Design Synthesis Dermatology: Androgen receptors CNS: NRI’s and 5‐HT1A  Inflammation: Analysis Test TNF‐α, IL‐23, & PDE4
  • 23. Track Record: Design Synthesis Recent Publications: MIC screening Bioorg. Med. Chem. Lett. Analysis Test 2009, 19, 1292, 3374, & 4626 ICAAC 2009 Poster: Efficacy study:  MRSA mouse skin  infection model
  • 24. Track Record: Design Synthesis Scientific Support Internal: Sr. Directors Medicinal Chemistry Analysis Test Dr Rajeshwar Singh 52 papers; 46 patents Dr S. N. Maiti 58 papers, 15 patents
  • 25. Papers and Patents 238 in total Track Record: Antiinfectives Design Synthesis Antifungals CV Cancer Inflammation Mental Health COPD Analysis Test Auto Immune Synthesis Analytical
  • 26. Track Record: Design Synthesis External Consultants Dr John Domagala Senior Consultant with IDSC  Previous position: Analysis Test Executive Director at Pfizer Prof. Mike James FRS University of Alberta Crystallography & Modeling
  • 27. NAEJA’s Role in  – Infrastructure – Expertise Drug Discovery – Experience Design Synthesis HIT CANDIDATE Analysis Test
  • 28. Single Client – Concurrent Anti‐infectives & Inflammation Programs Candidate Hit Generation  Hit to Lead  Lead  and Validation Optimization NAEJA CLIENT Phase 2 Phase 3 One program { On hold: biological liability Phase 1: 2009 Candidate selection: 2009 Lead declaration: 2009
  • 29. Other Successful Recent Programs Candidate Hit Generation  Hit to Lead  Lead  and Validation Optimization NAEJA Phase 1b/2: Cardiovascular disease Clinical trials: Pain management Clinical trials: anti‐bacterial Clinical trials: anti‐fungal Alzheimer's program Anti‐viral program
  • 30. Project starts: Q1 Project starts: Q1 Q1: Validated Q1: Validated thigh model Q3: Pre‐candidate  Q3: Pre‐candidate  #1 put on hold:  CASE STUDY Hit structure: narrow activity spectrum Hit structure: narrow activity spectrum thigh model #1 put on hold:  Racemic Racemic biological liability biological liability Anti‐infective Program Limited SAR Limited SAR Q1: ½ Kg = NAEJA Q1: ½ Kg Undeveloped chemistry: unusual scaffold Undeveloped chemistry: unusual scaffold pre‐candidate  pre‐candidate  = CLIENT No crystal structure No crystal structure synthesized synthesized Q1: Chemistry development, SAR, MIC panel Q1: Chemistry development, SAR, MIC panel Q1 to Q4 2009 Q1 to Q4 2009 Q4: Racemic Q4: Racemic Q1: Process development Q1: Process development Biochemistry Biochemistry lead #1 declared lead #1 declared Candidate declaration Candidate declaration >98% purity >98% purity Q3: Molecular modeling & SBDD Q3: Molecular modeling & SBDD Q2: chiral HPLC Q2: chiral HPLC >98% eefffff >98% eefffff Q3: Crystal  Q3: Crystal  Q1: Racemic lead  Q1: Racemic lead  structure structure #2 declared #2 declared Q1: ADME Q1: ADME 2007 2008 2009
  • 31. NAEJA Business Models Compound based  Program based  fee‐for‐service Drug discovery Custom Synthesis FTE R&D Service Discovery Biology
  • 32. NAEJA Packages: Compound based  fee‐for‐service Design Synthesis – Short term – Fixed deliverables Analysis Test – All materials & labor included – Literature searches included – Client owns 100% of the IP
  • 33. Program Research: FTE based R&D Service – Staffing – 1 computational chemist – 5 synthetic/medicinal chemists – 1‐2 biologists Design Synthesis – Time frame – 6‐12 months lead generation – 1‐2 years lead optimization – Client owns 100% of the IP Analysis Test – Included in FTE price – Consumables – Literature/patent searching – Waste disposal