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A distributed data mining network
infrastructure for Australian
radiotherapy decision support
Matthew Field; Mohamed Samir Barakat; Michael Bailey; Martin Carolan;
Andre Dekker; Geoff Delaney; Gary Goozee; Lois Holloway; Joerg
Lehmann; Tim Lustberg; Johan van Soest; Jonathan Sykes; Sean Walsh;
David Thwaites.
Introduction
• There is a need for decision support
systems (DSS) in radiation oncology.
• Technology is setting a rapid pace
and decisions are becoming more
complex.
• Are clinical trials an accurate
representation of clinical outcomes
in practice?
• Routine clinical and imaging data
are clinic specific.
Source: Philippe Lambin et. al. (2015): Modern clinical research:
How rapid learning health care and cohort multiple randomised
clinical trials complement traditional evidence based medicine,
Acta Oncologica.
Introduction
• Prospective study showed high prognostic accuracy (survival
and toxicity) from DSS model when compared to a radiation
oncologist prediction1.
• Challenges:
– Patient confidentiality.
– Model over-fitting.
– Data standardization.
• Solution: Distributed learning network between clinics.
– Share only prediction model parameters.
– Model training and validation on broader sources of data.
– Semantic web nomenclature transform.
1Cary Oberije et. al., (2014). A prospective study comparing the predictions of doctors versus models for treatment outcome
of lung cancer patients: A step toward individualized care and shared decision making, Radiotherapy and Oncology.
Computer Assisted Theragnostics
• Collaboration with MAASTRO clinic (Maastricht, Netherlands).
• Constructing a de-identified and standardized research
database at each participating NSW clinic (Liverpool, Illawarra,
Westmead, Newcastle). Updating over time.
• Treatment site specific, eg. Lung cancer prognosis of 2 year
survival.
– Tumour volume
– FEV1
– WHO-PS
– Gender
– Age
– …..
Example: Liverpool data set
• 4686 patients with lung cancer diagnosis.
• → 1750 with cancer Stage I-IIB.
• → 522 with curative dose (>45gy).
• → 282 with tumour volume.
Prediction model
• Example: Using a SVM model (linear decision boundary).
• Training data set: Liverpool, Testing data set: Illawarra.
– AUC: 0.78
• Training data set: Illawarra, Testing data set: Liverpool.
– AUC: 0.63
• Balance of data sets. Illawarra had 82% of cases in one class,
Liverpool 50%.
• In distributed learning we can achieve the same prediction
performance as a centralised data set.
Note: Randomly predicting survival would achieve an area under curve (AUC) of 0.50
Example of decision support
• Potential for personalised treatment regime decisions to be
based on the weight of evidence from routine clinical practice.
0 1 2 3 4 5 6
0
0.1
0.2
0.3
0.4
0.5
0.6
0.7
0.8
0.9
1
31%
16%
p = 0.098
Survival time in years
Probabilityofsurvival
Kaplan Meier curve for poor prognosis group (<10% chance)
Radical dose N=29
Non-radical dose N=69
0 1 2 3 4 5 6
0
0.1
0.2
0.3
0.4
0.5
0.6
0.7
0.8
0.9
1
71%
34%
p < 0.001
Survival time in years
Probabilityofsurvival
Kaplan Meier curve for good prognosis group (>50% chance)
Radical dose N=74
Non-radical dose N=29
Distributed Learning Network
Simulation Results
Centralized
Distributed
• Example: Synthetic binary classification.
• Training time per 100 iterations.
– Distributed: 394s
– Centralized: 8s
Conclusion
• Preparing decision support systems based on routine
clinical data (similar to www.predictcancer.org).
• Tested a prediction model sharing system between
three clinics.
• Data QA: Births/deaths registry queries.
• Adding tumour image features to prediction model.
• Composing additional prediction models for
comparison, eg. Decision trees and Bayesian networks.

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A distributed data mining network infrastructure for Australian radiotherapy decision support

  • 1.
  • 2. A distributed data mining network infrastructure for Australian radiotherapy decision support Matthew Field; Mohamed Samir Barakat; Michael Bailey; Martin Carolan; Andre Dekker; Geoff Delaney; Gary Goozee; Lois Holloway; Joerg Lehmann; Tim Lustberg; Johan van Soest; Jonathan Sykes; Sean Walsh; David Thwaites.
  • 3. Introduction • There is a need for decision support systems (DSS) in radiation oncology. • Technology is setting a rapid pace and decisions are becoming more complex. • Are clinical trials an accurate representation of clinical outcomes in practice? • Routine clinical and imaging data are clinic specific. Source: Philippe Lambin et. al. (2015): Modern clinical research: How rapid learning health care and cohort multiple randomised clinical trials complement traditional evidence based medicine, Acta Oncologica.
  • 4. Introduction • Prospective study showed high prognostic accuracy (survival and toxicity) from DSS model when compared to a radiation oncologist prediction1. • Challenges: – Patient confidentiality. – Model over-fitting. – Data standardization. • Solution: Distributed learning network between clinics. – Share only prediction model parameters. – Model training and validation on broader sources of data. – Semantic web nomenclature transform. 1Cary Oberije et. al., (2014). A prospective study comparing the predictions of doctors versus models for treatment outcome of lung cancer patients: A step toward individualized care and shared decision making, Radiotherapy and Oncology.
  • 5. Computer Assisted Theragnostics • Collaboration with MAASTRO clinic (Maastricht, Netherlands). • Constructing a de-identified and standardized research database at each participating NSW clinic (Liverpool, Illawarra, Westmead, Newcastle). Updating over time. • Treatment site specific, eg. Lung cancer prognosis of 2 year survival. – Tumour volume – FEV1 – WHO-PS – Gender – Age – …..
  • 6. Example: Liverpool data set • 4686 patients with lung cancer diagnosis. • → 1750 with cancer Stage I-IIB. • → 522 with curative dose (>45gy). • → 282 with tumour volume.
  • 7. Prediction model • Example: Using a SVM model (linear decision boundary). • Training data set: Liverpool, Testing data set: Illawarra. – AUC: 0.78 • Training data set: Illawarra, Testing data set: Liverpool. – AUC: 0.63 • Balance of data sets. Illawarra had 82% of cases in one class, Liverpool 50%. • In distributed learning we can achieve the same prediction performance as a centralised data set. Note: Randomly predicting survival would achieve an area under curve (AUC) of 0.50
  • 8. Example of decision support • Potential for personalised treatment regime decisions to be based on the weight of evidence from routine clinical practice. 0 1 2 3 4 5 6 0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1 31% 16% p = 0.098 Survival time in years Probabilityofsurvival Kaplan Meier curve for poor prognosis group (<10% chance) Radical dose N=29 Non-radical dose N=69 0 1 2 3 4 5 6 0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1 71% 34% p < 0.001 Survival time in years Probabilityofsurvival Kaplan Meier curve for good prognosis group (>50% chance) Radical dose N=74 Non-radical dose N=29
  • 10. Simulation Results Centralized Distributed • Example: Synthetic binary classification. • Training time per 100 iterations. – Distributed: 394s – Centralized: 8s
  • 11. Conclusion • Preparing decision support systems based on routine clinical data (similar to www.predictcancer.org). • Tested a prediction model sharing system between three clinics. • Data QA: Births/deaths registry queries. • Adding tumour image features to prediction model. • Composing additional prediction models for comparison, eg. Decision trees and Bayesian networks.