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                    A PRIMER TO




Prepared by:

                 Mr. Mohammed H. Raidah


                        2008-2009




00972599497541                               Brkaa2002@hotmail.com
*Contents:

Introduction to Organic synthesis …………………………………………………3
One group disconnection
disconnection of simple alcohol ………………………………………………….12
disconnection of simple olefins……………………………………………………17
disconnection of aryl ketones…………..………………………………………….18
Two group disconnection ……………………………………………………….21
β-Hydroxy carbonyl compounds …………………………………………………21
α-β unsaturated carbonyl compounds……………………………………………..23
1,3-dicarbonyl compounds ……………….............................................................24
1,5-dicaronyl compounds…………………………………………………………26
Mannich reaction………………………………………………………………….28
α-Hydroxy carbonyl compounds………………………………………………….29
1,2-diol…………………………………………………………………………….33
The Pinacol-Pinacolone rearrangement……………………………………………34
Allan-Robinson reaction…………………………………………………………...36
Bischler-Napieralski reaction………………………………………………………37
Bartoli Indol synthesis…………………………………………………………… .38
Benzilic acid rearrangement……………………………………………………….39
Benzoin condensation……………………………………………………………..39
Birch reduction……………..………………………………………………………40




                                             -2-
Introduction to Organic synthesis

Synthesis is the process of making a desired compound using chemical reaction. more
often than not, more than one step is involved.

The importance of synthesis :

1. Total synthesis of interesting and/or useful natural products
2. Industrially important compounds
3. Compounds of theoretical interest
4. Structure proof
5. Development of new synthetic methodology
6. Importance to other areas of science and technology

Basic steps of solving synthetic problems :

a. Choice of TARGET MOLECULE (T.M)
b. Consideration of applicable synthetic methodology
c. Design of synthetic pathway
d. Execution of synthesis
-- these steps are highly interactive

Approaching the design of a synthesis (part one)

For simple molecules it can be obvious just by looking at the target structure ,for example:

              Br


bromocyclohexane

Bromoalkanes are available from alkenes or from alcohols

                               Br
              HBr

         OH                     Br
              PBr3


           CO2Me
                       Esters are available from carboxylic acids by reaction with alcohols
                       ;benzoic acid is available from toluene

  methyl benzoate




                                               -3-
CO2H                 CO2Me
                     KMnO4                 MeOH
                                           H2SO 4

      Approaching the designing of a synthesis (part two)



     For more complex molecules , it help to have a formalized , logic-centred approach;
     RETROSYNTHETIC ANALYSIS

     Retrosynthetic analysis is the process of working backwards from the target molecule to
     progressively simpler molecules by means of DISCONNECTIONS and /or
     FUNCTIONAL GROUP INTERCONVERSIONS that correspond to know reactions .
     When you`ve got to a simple enough starting material (like something you can buy and
     usually is cheap) then the synthetic plan is simply to reverse of the analysis . The design
     of a synthesis needs to take into account some important factors

        1.  it hase to actually work
        2.  In general , it should be as short as possible
        3.  Each step should be efficient
        4.  Side products (if formed) and impurities (there always are ) should be easily
            separable from the desired product
        5. Environmental issues may be relevant
        6. There's more than one way to skin a cat

     Example retrosynthetic analysis
     Target molecule :

                               OH



                              Disconnect

                                                             B
                      A

                             OH                                  OH
SYNTHONS
                                                                                  SYNTHONS


                                                                 O

REAGENTS         ?            ?                     PhMgBr   H
                                                                                 REAGENTS




                                                -4-
Therefore the target molecule could be synthesized as follows :


                                                    OH
              Br
                    i) Mg/Et2O

                   ii)            CHO


        What is a synthon?
        When we disconnect a bond in target molecule , we are imagining a pair of charged
        fragments that we could stick together , like Lego bricks , to make the molecule we
        want . these imaginary charged species are called SYNTHONS . When you can
        think of a chemical with polarity that matches the synthon , you can consider that a
        Synthetic equivalent of the synthon. Thus,


                                  OH           O δ-
                                         ≡      δ+
                             R      H        R    H

        An aldehyde is a synthetic equivalent for the above synthon.
        There can be more than one synthetic equivalent for a given synthone, but if you can't
        think of one …try a different disconnection.

        Always consider alternative strategies.


                                             OH




                                                               B
                         A


                             OH                                OH
SYNTHONS
                                                                                    SYNTHONS



Synthetic                         BrMg
equivalents        PhCHO                                            Br              Synthetic
                                                           ?
                                                                                    equivalents




                                                  -5-
A second possible synthesis :
                                                                         OH
                                     Br
                                          i)Mg/Et2O
                                                                              Ph
                                          ii)PhCHO


           similary

                  OH                                                OH

             Ph                                             Ph




                                                                ≡

                                                                                   ≡
                                                                O
                                                                              BrMg
                                                          Ph

thus a third possible synthesis is


                  BrMg
                                                    OH
        O
                                               Ph
   Ph
                                                           Besides disconnections , we can also consider
functional group interconversion . Our target molecule is a secondary alcohol ,which could be prepare
by reduction of a ketone . this is represented as follows:

     OH                                             O
                               FGI
Ph                                          Ph


                                                        DISCONNECT



                                               O

                      O                   Ph

                Ph                                                  Br


     Synthesis number four

                                                    O                                   OH
            O                                                        LiAlH4
                      i)base
                                               Ph                                  Ph
      Ph
                      ii) Br                                                            T.M
                                                                                   Target Molecule
                                                          -6-
Analysis number five :

                                                    O
          O
                                               Ph
     Ph
                                           O

                                     Ph
                                                           LiCu           2

Synthesis number five :
                                           O                                         OH
      O
                     t-Bu2CuLi                                  NaBH4           Ph
                                      Ph
Ph
                                                                                      T.M



     Disconnecting heteroatoms can also be a good idea:


                     OH                                  OH          H2O

                Ph                                  Ph                           Ph

 6th approach :
                                                               OH
                                     i) Hg(OAc)2
          Ph                                              Ph
                                     ii) NaBH4


          There are other possibilities , but let's not bother with any more.


          How do you choose which method?

          Personal choice .If you have a favourite reagent, or if you are familiar with a
          particular reaction (or if you have a strong aversion to a reaction/reagent) then this
          will affect your choice .Also you need to bear in mind the efficiency of the reaction
          involved, and any potential side reactions (for example ,self- condensation of
          PhCOMe in method 4 ).




                                                    -7-
DEFI ITIO S
TARGET MOLECULE (T.M)        What you need to make
RETROSYNTHETIC ANALYSIS      The process of deconstructing the T.M
                             by breaking it into simpler molecules
                             until you get to a recognizable SM
STARTING MATERIAL (SM)       An available chemical that you can
                             arrive at by retrosynthetic analysis and
                             thus probably convert into the target
                             molecule
DISCONNECTION                Taking apart a bond in the T.M to see if
                             it gives a pair of reagents
FUNCTIONAL GROUP             Changing a group in the T.M into a
INTERCONVERSION (FGI)        different one to see if it gives accessible
                             intermediate
FUNCTIONAL GROUP ADDITION    Add a functional group to facilitate bond
(FGA)                        formation ,FGA especially applies in the
                             case of molecule containing no reactive
                             functional group
SYNTHON                      Conceptual fragment that arise from
                             disconnection
SYNTHETIC EQUIVALENT         Chemical that reacts as if it was a
                             synthon




                                   -8-
Some synthons and synthetic equivalents:

     synthon                                 equivalent(s)

                                             RCl ,RBr , RI , ROMs , ROTs
         R                                   only when R= alkyl

         OH                                            O

     R       R                                     R       R


         OH                                O                   OH
                                                                        Br
     R                                 R


         O                                             O

     R                                             R


                                         O                 O                 O       O
         O
                                     R       OEt       R       Cl        R       O       R
     R



          R                        RMgBr , RLi , R2CuLi , other organometallic reagents
(alkyl ; NOT"RH+base")

         O                                         O                    O
                                                                                 CO2Et
     R                                         R                    R


  make sure you don't lose CH2 group if you represent eg. RCH2 as R
   ( viz. make sure the product hase the right number of carbon atoms)




                                             -9-
Latent Polarity

Think about some of the reaction we've looked at for carbonyl compounds:

                                                        δ−
                O                  OH                  O
      A                 Nu
                                                       δ+
                                     Nu

                O
                                 O
      B             H   base
                                          E             δ−
                                                       O
                                                             δ−
                                                        δ+
                                 O
                                          E


                O                     O
      C                  Nu
                                                  Nu
                                              E
                                                                  δ−
                                                                  O
                                                                       δ−
                                                                  δ+        δ+
                                      O

                                                  Nu
                                          E

           δ−
 ie       O
  δ+ δ− δ+ δ− δ+ δ− δ+


these polarities apply quite generally:

           δ−                             δ−
          OH                              Br
       δ− δ+ δ− δ+ δ− δ+ δ−          δ− δ+ δ− δ+ δ− δ+ δ−



                                          δ−
          δ−                              NHR
          NR
                                     δ− δ+ δ− δ+ δ− δ+ δ−
      δ− δ+ δ− δ+ δ− δ+ δ−


                                      - 10 -
The partial positive and negative charges indicate the latent polarity of the bonds in
  a molecule. They help us choose the synthons for key disconnections in a
  retrosynthetic analysis . viz.
        δ−
       OH                                                OH
        δ+    δ−




Equivalents for synthons with reversed polarity

             synthon                                                     equivalent(s)


             OH                                                      O                  OH
                                                                              ,or                Br
     R         R                                             R                      R


         O                                                   O
                                                                                        O        O
                                                                         Br
    R                                                    R                    ,or                     Br
                                                                                        R

        O
                                                                     OEt
  Me                                                                          + sec-BuLi




             OEt                             OEt                          E                 OEt
                     s-BuLi
                                                    Li                                           E
                   (VERY strong base)
                                        ethoxy vinillithium                                  H3O+
                                              EVL
        similary from acetylene:
                                                             OH                              O
                                    E           +
                      i) base             H3O                            tautom.
                                                                 E                               E
                      ii) E               HgO




                                                    - 11 -
1.One group disconnection

    ** disconnection of simple alcohol:
                                            disconnection
               connection
      A + B                         C                                    A + B


Example.1.1

                              disconnection
              Me        OH
                                                                     +   CN
              Me        CN                              OH


        Synthesis                                                          Me        OH
                                            H           NaCN
                                O       +       +                          Me        CN


                                                                                OH           T.M
       mechanism                            O       +   H

                                                                     CN




Example.1.2

                    Ph
                              OH                               Ph
                                                                                          C CH
                   Me         C                                          OH      +
                                CH                             Me

      Synthesis
                         Ph                                                          Ph
                                                H                         base             OH
                                 O      +           +    HC CH
                        Me                                                       Me        C
                                                                                             CH

      mechanism                                                           Ph
                        HC CH base HC C                                          OH               T.M
                                                                          Me




                                                            - 12 -
Example.1.3
                     Ph
                             OH
                    Me       Et                       OH      +    H3C CH2



  Synthesis
                   Mg/Et2O       EtMgBr
         EtBr

        Ph                                            Ph
                                                                  OH
                O   +    H   +   EtMgBr
       Me                                            Me           Et

  mechanism

                                            Ph
                                                                               T.M
               O    +    H                           OH
                                            Me

                                 Et MgBr

Example.1.4

          Me        Me                           O
                                                  C OEt
                    OH                                        +    2MeMgBr




  Synthesis                                                   Me       Me
                   O
                    C OEt                                              OH
                             +    2MeMgBr



 mechanism
                                          O                            O
                    O                      C OEt                        C Me         T.M
                    C OEt                                 +
          +
                                             Me MgBr                    Me MgBr




                                            - 13 -
Alkylhalids
                                                                                              Ketones
       Compounds derived from alcohols
                                                            Esters

                                                                               alcohol


                                                         Aldehydes                       Olefins
Example.1.5

                                                             OH
                  OAc               FGI
                                               Ph                        Ph
       Ph                    Ph

                                                                               O
                  OH
                                                                         +    HC OEt
                                               2       Ph
       Ph                    Ph




 Synthesis:                                                                      OH
                                           O
                             MgBr
              2   Ph                 +    HC OEt                     Ph                  Ph


mechanism:                                                                                          OH
                                                                 O
                               O
                                                    Ph               H                  Ph                    Ph
                              HC OEt
                   MgBr
        Ph
                                                            MgBr
                                            Ph

                                                                                              OAc
                                    OH
                                                                                   Ph                    Ph
                        Ph                Ph       +    CH3COOH
                                                                                              T.M

                                          Rem inder:

                                            O                                    O                              O
                                                                 SOCl2                        R`OH
                                          R C OH                               R C Cl                         R C OR`




                                                        - 14 -
Example.1.6
                     OH                                     O
                                                                        BrMg
                                                                H   +                Ph
                               Ph



                      O             FGI             H OH                                        O
                                                                                      Br
                          H                                 H                              + H C H
                                                                                           formaldehyde
       cyclopentanecarbaldehyde           cyclopentylmethanol

               (aldehyde)                        (alcohol)



Synthesis

                 Br       Mg/Et2O                 MgBr
                                                                                           O
                             O                        H OH
               MgBr                                                 oxidation                  H
                           H C H                                H

                                                                        OH
                 O
                               BrMg                                             Ph
                      H    +                Ph




                                                   - 15 -
Example.1.7

                  Me    O
                  Me    O


            OH2                                                                               O
             H                          OH                             HO
                                     Me HO                                             + Me
         Me  O                                                                                    Me
                                          O                            HO
                                     Me
         Me  O
                                                 H
                                             O
             HO                      2   H       H       + H C C H
             HO

 Synthesis:
                                                                             O
                  O                                                                     Me        O
                                                              HO        Me        Me
                                                                                        Me        O
                       H +
         2                 H C C H                            HO
              H



mechanism:                                           O
                             O                                    HO
                                                 H       H                   HO           BaSO4    HO
             H C C       H       H                           C C             HO          reduction HO
     O    Me                                 OH
                                              O                        Me    O
                   HO                    Me
         Me                                                            Me    O
                   HO                     Me HO




                                                         - 16 -
**disconnection of simple olefins:

Example.1.8

                                                                         O
              Ph        FGI                    OH
                                               Ph                                   +    PhM gBr
                         a
                                                                cyclohexanone
   b        FGI

              Ph
                                   no helpful disconnection
              OH

  Example.1.9

                                                                                         O                Ph
                                       FGI                        Ph
                             Ph                                                               +    BrMg
                                        a           OH
            FGI     b


                             Ph                     H
                                                                               Ph
                                                            +    BrMg
                    OH                              O


       another analysis for synthesis:
       in example 1.9 the pathway (a) use Wittig reaction instead of Grinard.


                                  Ph                    Ph                               Ph
                                                                base
                   Br                       Ph3P        H                    Ph3P
       Ph3P


        O         PPh3                      O PPh3                                  Ph
                                                                                         +    O PPh3

                   Ph                              Ph
                                   R e m in d e r

                                        OH     H                 H
                                                                a c id


                                                            - 17 -
Example.1.10
                                                OH                                  O
                            FGI        Ph                                      Ph           +
 Ph                                                                                     H       Ph3P
                             a

                b
      FGI



                                       Ph                     H
 Ph                                              PPh3    +
                                                                  O
             OH




            **disconnection of aryl ketones:

 Example.1.11

                        O                                                      O
                                                                      +
                                                                          Cl
                                                MeO
       MeO


  Synthesis:                                                                        O
                                            O
                              +                       AlCl3
                                   Cl
             MeO                                              MeO

 mechanism:                                                                                            O
                                                                           O
                                        O
                                                                           H
                                  Cl
            MeO                                       MeO                               MeO




                                                        - 18 -
Example.1.12

                        O                                                              O
                                                            O
                                                                              +
          O                                                                       Cl
                                                            O
          O

                  OH2
                                                                                O
                                                   HO
         H     O                                                      +       H C H
         H                                         HO
               O

 Synthesis

         HO                         O                                 O
                            +     H C H + H
         HO                                                           O
                                                                                   O
         O                        O                AlCl3          O
                        +
         O                  Cl
                                                                  O


 Example.1.13

     Me                                           Me                               NO2
                            NO2
                                                           + Cl
                                      a
                                                                  O
         a         b
   MeO        O                               MeO

   Pathway (b) not occur because NO2 group is electrons withdraw


Example.1.14

    O                                     O                               O
                            FGI                                                a       b
                                                                                           CH   + Me   I

                                                                                           b
                                                                          a

                                              O                                            O
                                                                          CH
                                                    + BrMg                                            + HC CH
                                                                                                 Br
                                                  COOEt



                                                        - 19 -
Example.1.15




         N
                                               + HO                          CO2       +
                                          NH                                               BrMg
                                                         O
             O

Example.1.16
                                                            OH                O
                   R2                 R2                         R2                        +          R2
    R1                        R1                       R1                R1        H           BrMg


Example.1.17

                                                                      MgBr             O


                                                  OH
                                                                             +




Synthesis

      Br
                 i) Mg/Et2O                i) H3PO4
                                     OH
                        O                  ii) H2/Pd
                 ii)

                                                                T.M


   Reminder:

                         acid                    + H2O
         C C
                         heat
         H OH

                          heat                   + H2
         C C
         H H

                            LiAlH4
                  O                       C OH
                                          H




                                                       - 20 -
One group disconnections sum m ary

       1. alcohols
                         R1                                                  R2
                     R2        OH                R 1 MgBr +                           O
                       R3                                                    R3

        2. O lefins

                                                     PPh 3 +                      O

        3. acids
                       O
                     R C OH                      RMgBr           +        CO 2


       4. carbonyl com pounds
                         O                                   O
                Ar       C OR              ArH      + Cl             R
                                                             O
                              O
                                                                         O Et
               R CH 2         C R            RBr        +
                                                                         R
                                                             O




                                        2.Two group disconnection

       **β-Hydroxy carbonyl compounds


Example.2.1
                                                    O                O
               OH O
                                                             +               H
               β          H                             H
                     α

Synthesis:
                                                                 O

                                                                     H       O
       O                        O           O                                             OH O
  H            Base                             H                                 H
           H                        H                                                            H




                                                        - 21 -
Example.2.2

                                                                      O
                  O                            OH
                      O                                      Ph
                                                       +                  Ph
                α
                  β                                               O
                      Ph
                Ph OH

   Synthesis:
                                               O
                OH                                 O
                          O                             Ph
                Ph                       Ph        OH
                              Ph
                      O




Reminder:

     O
 the C group is attached to a carbon atom that has at least one H substituent
  (e.g.-CHCHO,-CHCOR, -CHCO2Et ),then electron-withdrawal by the O group
 results in such H atom being acidic:                                C



  HO
         H                OH
                                   C C O                      C C O
         C C O
         α                H2 O       H                          H
           H




                                      - 22 -
** α-β unsaturated carbonyl compounds
Example.2.3
                                                                                                          O                  O
                    O                                      OH O
            β
                α                                                                                             H   +   H3C        H
                            H                                            H



Synthesis:                                                                                 O                                     OH O
          O                                    O
                        Base                                                                   H         O                                 H
      α
    H3C     H                           H2 C       H
                                                                                                   H2C        H

                                                                     O
            OH O                                            β
                                 acid                           α
                                                                         H
                            H    heat
                                                           T.M

  Example.2.4
                        O                                  OH O                                      O                  O
            β
                                                                                                              +   H3C        CO2H
       Ph           α       CO2H                   Ph                CO2H                      Ph         H

 Synthesis:
                                                                         O                                                           O
            O                                      O                                   OH O
                                base                                Ph       H                           acid
                                                                                  Ph                CO2H heat           Ph               CO2H
     H3C        CO2H                      H2C          CO2H
                                                                                                                                 T.M


   Example.2.5
                                                                                  O
                                          HO                                                              O
                  O                                         O                              +
      β         α
                                                       R                                            R
                R

   Synthesis:
                                                                O            OH
                            base                   O                                       O acid                            O
                    O
                                                                                       R           heat
                                           R                                                                            R
                R
     Exam ple.2.6
                                                       OH                                      O
                    β


                    α

           O                               O                                       O

                                                                         - 23 -
** 1,3-dicarbonyl compounds
                                                                                    δ−           δ−
                                                                                    O            O
                                                                              δ− δ+ δ− δ+ δ−
Example.2.7

     O         O                           O             O                          O                     O

Ph                 Ph             Ph
                                                                                                 +
                                                                Ph            Ph         OEt                  Ph

Synthesis:
                                                                O                   O        O
                                           O
     O             Base                                  Ph         OEt
                                                Ph                            Ph                 Ph
          Ph       NaOEt
                                                                                        T.M


 Example.2.8

                                  Ph                                                                      Ph
                           a           b                    b
                                           OEt                                OEt
                   Ph                                                                   +   Ph
                           O       O                                      O                           O
                          a                                                                                   Ph
                                                                EtO           OEt
                                   Ph                                                         Ph
                                                                          O                               O
           Ph                                  OEt
                     O
                              +
                                       O
                                                    Ph
                   OEt
 Ph                                                          OEt
           O
                                                        O
 Example.2.9
               O                                                                        O
                    OEt                        Ph
     Ph                                                       OEt         +                 OEt
                    OEt                                 O
               O

                                        Ph                                               O
                                                         OEt
                                                                                   EtO        OEt
                                                    O

                                                                     - 24 -
Example.2.10

               Ph                            Ph
                                                     + Ph          C OEt
                                        Br
                                                                   O
      Ph       C OEt
               O
  Synthesis:
          Ph
                                            Base         T.M
               + Ph         C OEt
     Br
                            O
  mechanism:
                                       Ph
                                                         T.M
          Ph        C OEt         Br
                    O




 Example.2.11
                                            O
               δ−                                         O
      O        O              Me
                                                     +
Me                                                             H
               δ+   H


                                             O                 O
                                  Me
                                                         EtO        H
  Synthesis:
               O
                                  O
     Me                                         base
                        +   EtO        H        NaOEt
                                                            T.M




                                            - 25 -
** 1,5-dicaronyl compounds:                                                      δ−                            δ−
                                                                                            O                            O
                                                                                    δ− δ+ δ− δ+ δ− δ+ δ−
      Michael addition
                                                                   O                                         O
                   O                                                         Ph
                                           EtO               Ph                    H                                 2   Ph
                               Ph                                                                   Ph       1                H
       Ph                                   α
                                                     H                                      +                                5
                                                                                       O                         3
                                                                                                                                  O
                                       β                                                                                 4
                                                O                          H




  Example.2.12

       O                           O                               O                        O                                     O            O
               a       β       b                     b
  R            α                       R`                     R                 +               R`                           R             +       R`
                                                                       H
       a

           O                               O

      R                    +                    R`

 Example.2.13
                                                                                                                                  O
                                                               O
      O                                O                                                            O                                                   O
                                                                                                                                       CO2Et
            CO Et                                                      CO2Et
           1 2
                       3               5                                       +                                                           +
               2               4
                                                                                            H



Example.2.14
                                                                        CN                                                        CN
           CN
                   a b                               b       EtO                                                 EtO
EtO                                                                                                                                        +
                                                                        H              +
                                                                   O           Ph               O                            O        Ph       O
      O            Ph              O

           a
                       CN                                                           CN
      EtO                                                              EtO
                                   +        Ph           O
                                                                                            +           Ph       O
               O                                                               O


                                                                                   - 26 -
Example.2.15
        O                                    O                                  O
   α        CO2Et                                    CO2Et                                                   O                   O
                                                                      O
                                                                             5      4    CO2Et
    β                               HO                                                                               CO2Et
                                                                                    3
                                                                                                                             +       Ph
 Ph         Ph                                                        1
                                        Ph           Ph                     2           Ph




        Example.2.16
            O                                    O                                           O
                                                          3       4
                                                 1        2
                                                              5
                                                                      O                                  +
                β                   O                                                                                  O
                        α                                 O                                          O




         Example.2.17
                        OMe                                           OMe
                                                                                             O
                                                                                    +
            O                       O                         O
                            3
            1                       5
                    2           4




        Example.2.18

                                                          O
            O                                                                                    O                     H
                                                 H                                                               +    O
                                             O




                                                                          - 27 -
Mannich reaction:
                                                                          O
        O                O
                                                            H                           R'
    R       CH3
                  +    H C H         +       R'2NH                    R            N
                      formaldehyde                                                 R'

     mechanism:
              H                                                                   R'
                                         H        R'
     R'2NH                     H                                                       N     CH2
            H   O                                       N CH2 OH2
                                                  R'                              R'
                                                                                             O
                      I Me                                                              R         CH2
                               R'                               O
                                    N        CH2 CH2            C R
                               R'

                      R'   Me                H          O
                                                                                        R
                           N  CH2            CH         C       R
                      R'                                                          O

                                                                   R' Me
I   Me was attacked by N thus N bearing +ve charge make easy remove   N
                                                                   R'

    Application for mannich reaction
                           O                                                  O                         O

                                                                    H                      N R'
                                + CH2O + R'2NH
                                                                                           R'
    mechanism:
                      H                                                           R'
                                         H         R'
        R'2NH                  H                                                       N     CH2
                  H        O                            N CH2 OH2
                                                   R'                             R'
                                                                                             O

                      I Me
                                                            O
                               R'
                                     N       CH2
                               R'
                                                 O
                      R'   Me     H                                           O
                           N  CH2
                      R'




                                                                    - 28 -
Example.2.19
           O                                       O
                                                                                 O                O
                       Ph                          1 2
                                           O                     Ph                       Ph +
                                                   4     3
                                               5




          O                         O

                                           + CH2O

                               remember Mannich reaction




Example.2.20
                                                             O                               O
                           O
  O
         NR3
                                    NR2                          +    CH2    NR2                 +   CH2 NR2

                                                                                                  OH

  O                                  O                                                O
                       H
       + HO CH2 NR2                            +   HO CH2 NHR2                            + CH2O + R2NH




        ** α-Hydroxy carbonyl compounds



          Ph       OH                      Ph
                                                       O + COOH
               α   C OH
                                           Ph
          Ph       O                                             or CN

        Synthesis:
                   O                                                        Ph       OH
                               CN         Ph                 NaOH
                                                   OH                                 C OH
              Ph       Me                                    H2O
                                H         Ph       CN                       Ph        O
                                                                                     T.M


                                                             - 29 -
Example.2.21


        OH                                   O                                                 O
          O                                            COOH
                                         2
                                             1   H +                                      +        H
          C OH                                         or CN                          C
                                     3
                                         C                                    EtO         O
EtO2C                                        O
                                 EtO

                                                                                                       O

                                                                                  C
                                                                                      O
                                                                                          +    EtO         H
                                                                            EtO

                            Br
  EtO
        C
            O                    +       CH2COOEt




   Synthesis:



   O                          O                                                 O
    C OEt                      C OEt                            O                C OEt
                 OEt
 H2C   OEt
                            H2C   OEt
                                                                          +   H2C
     C                          C                        EtO        OEt
   O                          O OEt


                                                                                    O                           O
                                                  H
    O                                                  OEt                        H C OEt                           H
     C OEt             Br
                                                 CO2Et                    CO2Et                                CO2Et
  H2C

                                                                                              OH                 CN
                                                                                                O
                                                                                                C OH            HO/H2O
                                                                               EtO2C




                                                       - 30 -
Example.2.22

      Ph    OH                                        O
                             OH                                         OH +        2PhMgBr
      Ph                                        EtO
                OH                                        OH




                                                H                  OH + CN

                                                    O
      Synthesis:
                                                                                                            O
                   CH2 O                            CN                          OH                                        OH
                                           OH                  CN                     HO/H2O         HO
                                                                      C
                     K2CO3                                                                                      OH
        CHO                  H C                                            H
                                                                   HO
                               O
                                                                                          O
                                       OH                                                                 OH
                                  Ph                            2PhMgBr             EtO                          EtOH/H
                                                          OH
                              Ph                                                              OH
                                         OH
                                       T.M




                      Example.2.23



                                                                                +    CN
                       HOOC                NH                  H        NH
                                           H



                                                                          +      NH3
                                                           H        O

Reminder:

                         NH2                       NH2
              NH3
  RCHO                 R C CN                    R C COOH
                CN       H                         H

 mechanism:

       O                      OH                                                                                  H
                                                                    CN            H                HO/H2O
                 NH3
                                                    R C        H                R C       CN                    R C     COOH
  R    C    H            R C           H
                                                          NH                        NH2                           NH2
           NH3                NH2



                                                                   - 31 -
Example.2.24
                                                                               Ph
        Ph                              Ph
Ph                               Ph                     Ph         O
             O
                                HO                                      +            O
                                                         Ph        O
Ph                              Ph
       Ph                         HO                                          Ph
                                       Ph
                                                                                   FGI

                                                                               Ph
                                                         O

                                2PhCH2MgBr + EtO              H                     OH

                                                                              Ph
Synthesis:
     O                        OH                    Ph         OH                  Ph       O
                 CN                    Ph MgBr                         CrO3
  Ph C H                   Ph C H
             HO/H2O
                                                    Ph         O                            O
                            O    OH                                                 Ph

                                               Ph
    O                                                                          Ph
                 + 2PhCH2MgBr                                 CrO3
  H C OEt                                           OH
                                                                                    O
                                              Ph
                                                                              Ph



                      Ph                      H Ph                                 Ph
                                        Ph                             Ph
 Ph    O
                                       HO               acid
                                                                                        O
             +             O
                                                        heat
       O                               Ph                              Ph
 Ph                                                                             Ph
                      Ph                 HO        Ph
                                                                              T.M




                           Reminder:

                                O                             OH
                                       LiAlH4
                                                              C H


                                              - 32 -
** 1,2-diol

           Reminder:
                                        HO OH
                          KMnO4
                          or OsO4


                        hydration               OH
                                                OH



                  OH       Al2O3
                   OH


           One useful radical reaction is the pinacol reduction:
                                            HO OH
                          Mg - Hg
                   O
                          benzene


       HO OH                                              O            PPh3
                    FGI
                                                                   +
                                                     remember Witting reaction




   Example.2.25
            OH OH
                                                                               Ph3P
                                                                            O +
                   Ph                                Ph
                                                                                         Ph

Example.2.26

       H                     O              H
  O             CO2Me                                CO2Me                CO2Me
                                       HO                                                         CO2Me
                                   +                                                          α
                                                                                        +
   O                                   HO                                                     β
       H                                    H
                                                                                  α−β unsaturated carbonyl




                                                          - 33 -
Example.2.27

                                                        O
                        CO2H
                                                        C H      +   Ph3P CH2 CO2H



                                                        O
                                                    α
                             FG               +         C H
                               I
                                                   β


                         OH
                        OH



        ** The Pinacol-Pinacolone rearrangement

     HO      OH                     O          R4
   R1          R4        H
                                               R3
        R2    R3                    R1       R2

   mechanism:

                                    HO       OH2                   HO                  O         R4
                    H                                            R1           R4
     HO      OH                    R1          R4
   R1          R4                                                                                R3
                                        R2   R3                      R2   R3           R1       R2
        R2     R3



Example.2.28


        O                                                                          O
             reverse -pinacol            OH OH           pinacol
                                                                          2
                                                         reduction
             rearrangement




Synthesis:


                               OH OH                       OH2 OH
             Mg - Hg                                                                       OH
         O                                    H+
             benzene                                                                                  T.M




                                                        - 34 -
A closely allied reductive linking of carbonyl groups is an intramolecular
    version with esters, called the acyloin reaction, which again gives
    a 1,2-dioxygenated skeleton:


                                                                                          C     O
                                            CO2Et
                                                            Na
                           (CH2)n                                          (CH2)n
                                                        Xylene

                                           CO2Et                                          CHOH




Mechanism of Acyloin Condensation

                                                Na+         Na+                     Na+       Na+
         O                                 O            O                                                         O        O
                                                                                  O       O
2                          0                       +                                                -2NaOMe
    R        OMe + 2Na                 R        OMe R       OMe             MeO               OMe                 R        R
                                                                                  R       R

                               Na+O         O Na+
    O        O         0                                Na+ O        O Na+ H O HO                   OH                 O       OH
                 2Na                                                        2                            tautomerism
    R        R                   R          R                R       R      -2NaOH R                R                  R       R




        Example.2.29

                                                             CO2Et
                                                                                                                 CO2Et
                       O              acyloin                               Diels–Alder
                                                                                                2           +
                   OH                                                                                            CO2Et
                                                             CO2Et




                                                                  - 35 -
Example.2.30

                                                                         CO2Et

                                                                         C
          CO2Et                        CO2Et
                                                                    +
                                                                         C
          CO2Et                        CO2Et
                                                                         CO2Et



    OMe                          OMe                         OMe




                                                           Ph           CH2Br

                                                                +
                       HO                              C
                                                   O       H
                                                                        OH


    OMe                        OMe

Synthesis:
                                                                    Ph3P          O
   CH3                 CH2Br               CH2Br
                                                                        HC        C
          Br2/light         Me2SO4                 i) Ph3P                    H
                                                    ii) Base
                                                             CHO                      Ph
                                                   iii) Ph
   OH                  OH                  OMe
                                                                        OMe


               CO2Et                                                                       OMe
                                           CO2Et
              C

              C                            CO2Et

              CO2Et


    OMe                              OMe
                                     T.M




                                                    - 36 -
Example.2.31
                                                                                       CO2Et
                   CO2Et                                CO2Et
                                                                                       C
       O                                    O                                O +
                                                        CO2Et                          C
                   CO2Et
                                                                                       CO2Et
   Synthesis:
                          CO2Et
                                                             CO2Et
                          C                         O
               O
                            C                                CO2Et

                            CO2Et                   T.M




    ** Allan-Robinson reaction:

    Synthesis of flavones

                        O       O
                                                O       R'
       OH
                   R'       O       R
                        R'CO2Na                         R
                   R
                                                O
       O



mechanism:

    OH                                                       O       O
           H                            OH                                   OH                    HO
                       R'CO2Na
                                                    R'                   R        R'           O
                                                                 O                                   R'
               R                                                                           O         H
   O                                            R
                                        O                                              R            R
                                                                             O                 O



                                                                                               O        R'

                                                                                                        R
                                                                                               O


                                                                 - 37 -
** Bichler- apieralski reaction

    Synthesis of dihydro isoquinoline from β-phenylethylamide using phosphorus oxychloride.


                        POCl3
           HN                             N
                    O                 R
           R


mechanism:

                   O
      HN        Cl2P Cl                   HN                          N   H
                                                                                               N H
                O                                 OPOCl2                           H
       R                                  R                       R       OPOCl2       R       OPOCl2




                                                                                               N

                                                                                           R
       Example.2.32


       H2C                      H3C                          O
                                      OH
                         FGI
                                                                 + Ph3P CH2



        Synthesis:

                           i) Ph3P
      Br CH3                          Ph3P CH2
                           ii)base

           O            PPh3                  O    PPh3
                        CH2                        CH2




                                                    - 38 -
Example.2.33

                                                           O                   H
                                                                               N
      N                       N
                                  OH                               +
                                    H



     Synthesis:

       O                  H                  N                                     N
                                                     OH        acid
                          N                            H       heat
                 +

    ** Bartoli Indol synthesis


    Synthesis of 7-substituted indol from Ortho-substituted nitro benzene and vinyl Grignard
    reagent.



                     i)       MgBr

             NO2 ii) H3O                         N
      R                                          H


mechanism:

                     MgBr

             O                               O                                         MgBr
       N                                 N                                 N                            O
                                                                                                      N
       O
                                         O   MgBr                      O                              MgBr



                                                           H   H
                                                                       H       HO                     H
                                                                       O MgBr
                                                                                                  O
                                     N                         N                              N
                                     H                             H                          MgBr




                                                      - 39 -
** Benzilic acid rearrangement

              Rearrangment of Benzil to Benzilic acid via aryl migration.


               O                                    O
                          KOH            Ar
 Ar                                            C        OH
          C         Ar                   Ar
       O                                   OH
      Benzil                              Benzilic




 mechanism:
                                          Ar                                O                         O                        O
           O                                   OH
                                Ar                                 Ar                       Ar                           Ar
Ar
               Ar
                                      C        O                        C         OH             C  O acidic    C  OH
      C                                                            Ar                       Ar        workup Ar
                                      O                                 O                        OH             OH
      O                  OH
                                                        a proton transfer leads to formation of carboxylate anion




           ** Benzoin condensation
           It's a cyanide-catalyzed condensation of aryl aldehyde to Benzoin.

                                          OH
     Ar         H        CN     Ar
                                               Ar
          O                          O
     aryl aldehyde                   Benzoin



 mechanism:
                                                                                                                               O
     Ar        H                     CN                       CN                       CN                                 CN
                                                                        -H                           O              Ar
                                                +H                                Ar
                                Ar        H              Ar        H                                                               Ar
          O              CN          O                        OH                       OH    Ar           H               OH


                                                                        OH                                OH
                                                                                                  CN                Proton
                                                              Ar                            Ar
                                                                             Ar                               Ar    transfer
          Reminder:                                                 O                             O


                CN
                              such H bond to Carbon connect with two electron withdrawal groups
          Ar         H         thus this H is Acidic.

                OH


                                                                        - 40 -
** Birch reduction

       The reduction of aromatic substrates with alkali metal, alcohol in liquid ammonia
       , known as “Birch reduction”

       1) Benzene ring with an electron donating substituent.
      X                            X
                    Na,liq,NH3
                     ROH

    X=OR,R,NH2

     X                                       X                                               X
                                                              X
                                                                                                 H
             Single Electron Transfere                               H                               H
                                                                             H OR
                     SET

                                                       H                               H
                                                             Radical anion
                      X                                 X
                            H
     +e-                        H

             H
                                H OR



2) Benzene ring with an electron withdrawing substituent:

      W                                  W

                  Na,liq,NH3




   W=CO2H,CO2R,COR,CONR2,CN,Ar




       W                                               W                       W
                                    W
                                                                                       +e-
                   +e-

                                                               H NH2          H    H
                                                       H
                                                     Radical anion
         W                                       W
                       H NH2



     H       H

                                                            - 41 -
References:

1) Stuart G. Warren; designing organic synthesis , John Wiley,1978

2) CM3001 Dr.Alan Ford (lab 415) ,text :Willis&Wills organic Synthesis (OUP)




                                             - 42 -

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Organic Synthesis Primer

  • 1. ‫ﺑﺴﻢ ﺍﷲ ﺍﻟﺮﲪﻦ ﺍﻟﺮﺣﻴﻢ‬ A PRIMER TO Prepared by: Mr. Mohammed H. Raidah 2008-2009 00972599497541 Brkaa2002@hotmail.com
  • 2. *Contents: Introduction to Organic synthesis …………………………………………………3 One group disconnection disconnection of simple alcohol ………………………………………………….12 disconnection of simple olefins……………………………………………………17 disconnection of aryl ketones…………..………………………………………….18 Two group disconnection ……………………………………………………….21 β-Hydroxy carbonyl compounds …………………………………………………21 α-β unsaturated carbonyl compounds……………………………………………..23 1,3-dicarbonyl compounds ……………….............................................................24 1,5-dicaronyl compounds…………………………………………………………26 Mannich reaction………………………………………………………………….28 α-Hydroxy carbonyl compounds………………………………………………….29 1,2-diol…………………………………………………………………………….33 The Pinacol-Pinacolone rearrangement……………………………………………34 Allan-Robinson reaction…………………………………………………………...36 Bischler-Napieralski reaction………………………………………………………37 Bartoli Indol synthesis…………………………………………………………… .38 Benzilic acid rearrangement……………………………………………………….39 Benzoin condensation……………………………………………………………..39 Birch reduction……………..………………………………………………………40 -2-
  • 3. Introduction to Organic synthesis Synthesis is the process of making a desired compound using chemical reaction. more often than not, more than one step is involved. The importance of synthesis : 1. Total synthesis of interesting and/or useful natural products 2. Industrially important compounds 3. Compounds of theoretical interest 4. Structure proof 5. Development of new synthetic methodology 6. Importance to other areas of science and technology Basic steps of solving synthetic problems : a. Choice of TARGET MOLECULE (T.M) b. Consideration of applicable synthetic methodology c. Design of synthetic pathway d. Execution of synthesis -- these steps are highly interactive Approaching the design of a synthesis (part one) For simple molecules it can be obvious just by looking at the target structure ,for example: Br bromocyclohexane Bromoalkanes are available from alkenes or from alcohols Br HBr OH Br PBr3 CO2Me Esters are available from carboxylic acids by reaction with alcohols ;benzoic acid is available from toluene methyl benzoate -3-
  • 4. CO2H CO2Me KMnO4 MeOH H2SO 4 Approaching the designing of a synthesis (part two) For more complex molecules , it help to have a formalized , logic-centred approach; RETROSYNTHETIC ANALYSIS Retrosynthetic analysis is the process of working backwards from the target molecule to progressively simpler molecules by means of DISCONNECTIONS and /or FUNCTIONAL GROUP INTERCONVERSIONS that correspond to know reactions . When you`ve got to a simple enough starting material (like something you can buy and usually is cheap) then the synthetic plan is simply to reverse of the analysis . The design of a synthesis needs to take into account some important factors 1. it hase to actually work 2. In general , it should be as short as possible 3. Each step should be efficient 4. Side products (if formed) and impurities (there always are ) should be easily separable from the desired product 5. Environmental issues may be relevant 6. There's more than one way to skin a cat Example retrosynthetic analysis Target molecule : OH Disconnect B A OH OH SYNTHONS SYNTHONS O REAGENTS ? ? PhMgBr H REAGENTS -4-
  • 5. Therefore the target molecule could be synthesized as follows : OH Br i) Mg/Et2O ii) CHO What is a synthon? When we disconnect a bond in target molecule , we are imagining a pair of charged fragments that we could stick together , like Lego bricks , to make the molecule we want . these imaginary charged species are called SYNTHONS . When you can think of a chemical with polarity that matches the synthon , you can consider that a Synthetic equivalent of the synthon. Thus, OH O δ- ≡ δ+ R H R H An aldehyde is a synthetic equivalent for the above synthon. There can be more than one synthetic equivalent for a given synthone, but if you can't think of one …try a different disconnection. Always consider alternative strategies. OH B A OH OH SYNTHONS SYNTHONS Synthetic BrMg equivalents PhCHO Br Synthetic ? equivalents -5-
  • 6. A second possible synthesis : OH Br i)Mg/Et2O Ph ii)PhCHO similary OH OH Ph Ph ≡ ≡ O BrMg Ph thus a third possible synthesis is BrMg OH O Ph Ph Besides disconnections , we can also consider functional group interconversion . Our target molecule is a secondary alcohol ,which could be prepare by reduction of a ketone . this is represented as follows: OH O FGI Ph Ph DISCONNECT O O Ph Ph Br Synthesis number four O OH O LiAlH4 i)base Ph Ph Ph ii) Br T.M Target Molecule -6-
  • 7. Analysis number five : O O Ph Ph O Ph LiCu 2 Synthesis number five : O OH O t-Bu2CuLi NaBH4 Ph Ph Ph T.M Disconnecting heteroatoms can also be a good idea: OH OH H2O Ph Ph Ph 6th approach : OH i) Hg(OAc)2 Ph Ph ii) NaBH4 There are other possibilities , but let's not bother with any more. How do you choose which method? Personal choice .If you have a favourite reagent, or if you are familiar with a particular reaction (or if you have a strong aversion to a reaction/reagent) then this will affect your choice .Also you need to bear in mind the efficiency of the reaction involved, and any potential side reactions (for example ,self- condensation of PhCOMe in method 4 ). -7-
  • 8. DEFI ITIO S TARGET MOLECULE (T.M) What you need to make RETROSYNTHETIC ANALYSIS The process of deconstructing the T.M by breaking it into simpler molecules until you get to a recognizable SM STARTING MATERIAL (SM) An available chemical that you can arrive at by retrosynthetic analysis and thus probably convert into the target molecule DISCONNECTION Taking apart a bond in the T.M to see if it gives a pair of reagents FUNCTIONAL GROUP Changing a group in the T.M into a INTERCONVERSION (FGI) different one to see if it gives accessible intermediate FUNCTIONAL GROUP ADDITION Add a functional group to facilitate bond (FGA) formation ,FGA especially applies in the case of molecule containing no reactive functional group SYNTHON Conceptual fragment that arise from disconnection SYNTHETIC EQUIVALENT Chemical that reacts as if it was a synthon -8-
  • 9. Some synthons and synthetic equivalents: synthon equivalent(s) RCl ,RBr , RI , ROMs , ROTs R only when R= alkyl OH O R R R R OH O OH Br R R O O R R O O O O O R OEt R Cl R O R R R RMgBr , RLi , R2CuLi , other organometallic reagents (alkyl ; NOT"RH+base") O O O CO2Et R R R make sure you don't lose CH2 group if you represent eg. RCH2 as R ( viz. make sure the product hase the right number of carbon atoms) -9-
  • 10. Latent Polarity Think about some of the reaction we've looked at for carbonyl compounds: δ− O OH O A Nu δ+ Nu O O B H base E δ− O δ− δ+ O E O O C Nu Nu E δ− O δ− δ+ δ+ O Nu E δ− ie O δ+ δ− δ+ δ− δ+ δ− δ+ these polarities apply quite generally: δ− δ− OH Br δ− δ+ δ− δ+ δ− δ+ δ− δ− δ+ δ− δ+ δ− δ+ δ− δ− δ− NHR NR δ− δ+ δ− δ+ δ− δ+ δ− δ− δ+ δ− δ+ δ− δ+ δ− - 10 -
  • 11. The partial positive and negative charges indicate the latent polarity of the bonds in a molecule. They help us choose the synthons for key disconnections in a retrosynthetic analysis . viz. δ− OH OH δ+ δ− Equivalents for synthons with reversed polarity synthon equivalent(s) OH O OH ,or Br R R R R O O O O Br R R ,or Br R O OEt Me + sec-BuLi OEt OEt E OEt s-BuLi Li E (VERY strong base) ethoxy vinillithium H3O+ EVL similary from acetylene: OH O E + i) base H3O tautom. E E ii) E HgO - 11 -
  • 12. 1.One group disconnection ** disconnection of simple alcohol: disconnection connection A + B C A + B Example.1.1 disconnection Me OH + CN Me CN OH Synthesis Me OH H NaCN O + + Me CN OH T.M mechanism O + H CN Example.1.2 Ph OH Ph C CH Me C OH + CH Me Synthesis Ph Ph H base OH O + + HC CH Me Me C CH mechanism Ph HC CH base HC C OH T.M Me - 12 -
  • 13. Example.1.3 Ph OH Me Et OH + H3C CH2 Synthesis Mg/Et2O EtMgBr EtBr Ph Ph OH O + H + EtMgBr Me Me Et mechanism Ph T.M O + H OH Me Et MgBr Example.1.4 Me Me O C OEt OH + 2MeMgBr Synthesis Me Me O C OEt OH + 2MeMgBr mechanism O O O C OEt C Me T.M C OEt + + Me MgBr Me MgBr - 13 -
  • 14. Alkylhalids Ketones Compounds derived from alcohols Esters alcohol Aldehydes Olefins Example.1.5 OH OAc FGI Ph Ph Ph Ph O OH + HC OEt 2 Ph Ph Ph Synthesis: OH O MgBr 2 Ph + HC OEt Ph Ph mechanism: OH O O Ph H Ph Ph HC OEt MgBr Ph MgBr Ph OAc OH Ph Ph Ph Ph + CH3COOH T.M Rem inder: O O O SOCl2 R`OH R C OH R C Cl R C OR` - 14 -
  • 15. Example.1.6 OH O BrMg H + Ph Ph O FGI H OH O Br H H + H C H formaldehyde cyclopentanecarbaldehyde cyclopentylmethanol (aldehyde) (alcohol) Synthesis Br Mg/Et2O MgBr O O H OH MgBr oxidation H H C H H OH O BrMg Ph H + Ph - 15 -
  • 16. Example.1.7 Me O Me O OH2 O H OH HO Me HO + Me Me O Me O HO Me Me O H O HO 2 H H + H C C H HO Synthesis: O O Me O HO Me Me Me O H + 2 H C C H HO H mechanism: O O HO H H HO BaSO4 HO H C C H H C C HO reduction HO O Me OH O Me O HO Me Me Me O HO Me HO - 16 -
  • 17. **disconnection of simple olefins: Example.1.8 O Ph FGI OH Ph + PhM gBr a cyclohexanone b FGI Ph no helpful disconnection OH Example.1.9 O Ph FGI Ph Ph + BrMg a OH FGI b Ph H Ph + BrMg OH O another analysis for synthesis: in example 1.9 the pathway (a) use Wittig reaction instead of Grinard. Ph Ph Ph base Br Ph3P H Ph3P Ph3P O PPh3 O PPh3 Ph + O PPh3 Ph Ph R e m in d e r OH H H a c id - 17 -
  • 18. Example.1.10 OH O FGI Ph Ph + Ph H Ph3P a b FGI Ph H Ph PPh3 + O OH **disconnection of aryl ketones: Example.1.11 O O + Cl MeO MeO Synthesis: O O + AlCl3 Cl MeO MeO mechanism: O O O H Cl MeO MeO MeO - 18 -
  • 19. Example.1.12 O O O + O Cl O O OH2 O HO H O + H C H H HO O Synthesis HO O O + H C H + H HO O O O O AlCl3 O + O Cl O Example.1.13 Me Me NO2 NO2 + Cl a O a b MeO O MeO Pathway (b) not occur because NO2 group is electrons withdraw Example.1.14 O O O FGI a b CH + Me I b a O O CH + BrMg + HC CH Br COOEt - 19 -
  • 20. Example.1.15 N + HO CO2 + NH BrMg O O Example.1.16 OH O R2 R2 R2 + R2 R1 R1 R1 R1 H BrMg Example.1.17 MgBr O OH + Synthesis Br i) Mg/Et2O i) H3PO4 OH O ii) H2/Pd ii) T.M Reminder: acid + H2O C C heat H OH heat + H2 C C H H LiAlH4 O C OH H - 20 -
  • 21. One group disconnections sum m ary 1. alcohols R1 R2 R2 OH R 1 MgBr + O R3 R3 2. O lefins PPh 3 + O 3. acids O R C OH RMgBr + CO 2 4. carbonyl com pounds O O Ar C OR ArH + Cl R O O O Et R CH 2 C R RBr + R O 2.Two group disconnection **β-Hydroxy carbonyl compounds Example.2.1 O O OH O + H β H H α Synthesis: O H O O O O OH O H Base H H H H H - 21 -
  • 22. Example.2.2 O O OH O Ph + Ph α β O Ph Ph OH Synthesis: O OH O O Ph Ph Ph OH Ph O Reminder: O the C group is attached to a carbon atom that has at least one H substituent (e.g.-CHCHO,-CHCOR, -CHCO2Et ),then electron-withdrawal by the O group results in such H atom being acidic: C HO H OH C C O C C O C C O α H2 O H H H - 22 -
  • 23. ** α-β unsaturated carbonyl compounds Example.2.3 O O O OH O β α H + H3C H H H Synthesis: O OH O O O Base H O H α H3C H H2 C H H2C H O OH O β acid α H H heat T.M Example.2.4 O OH O O O β + H3C CO2H Ph α CO2H Ph CO2H Ph H Synthesis: O O O O OH O base Ph H acid Ph CO2H heat Ph CO2H H3C CO2H H2C CO2H T.M Example.2.5 O HO O O O + β α R R R Synthesis: O OH base O O acid O O R heat R R R Exam ple.2.6 OH O β α O O O - 23 -
  • 24. ** 1,3-dicarbonyl compounds δ− δ− O O δ− δ+ δ− δ+ δ− Example.2.7 O O O O O O Ph Ph Ph + Ph Ph OEt Ph Synthesis: O O O O O Base Ph OEt Ph Ph Ph Ph NaOEt T.M Example.2.8 Ph Ph a b b OEt OEt Ph + Ph O O O O a Ph EtO OEt Ph Ph O O Ph OEt O + O Ph OEt Ph OEt O O Example.2.9 O O OEt Ph Ph OEt + OEt OEt O O Ph O OEt EtO OEt O - 24 -
  • 25. Example.2.10 Ph Ph + Ph C OEt Br O Ph C OEt O Synthesis: Ph Base T.M + Ph C OEt Br O mechanism: Ph T.M Ph C OEt Br O Example.2.11 O δ− O O O Me + Me H δ+ H O O Me EtO H Synthesis: O O Me base + EtO H NaOEt T.M - 25 -
  • 26. ** 1,5-dicaronyl compounds: δ− δ− O O δ− δ+ δ− δ+ δ− δ+ δ− Michael addition O O O Ph EtO Ph H 2 Ph Ph Ph 1 H Ph α H + 5 O 3 O β 4 O H Example.2.12 O O O O O O a β b b R α R` R + R` R + R` H a O O R + R` Example.2.13 O O O O O O CO2Et CO Et CO2Et 1 2 3 5 + + 2 4 H Example.2.14 CN CN CN a b b EtO EtO EtO + H + O Ph O O Ph O O Ph O a CN CN EtO EtO + Ph O + Ph O O O - 26 -
  • 27. Example.2.15 O O O α CO2Et CO2Et O O O 5 4 CO2Et β HO CO2Et 3 + Ph Ph Ph 1 Ph Ph 2 Ph Example.2.16 O O O 3 4 1 2 5 O + β O O α O O Example.2.17 OMe OMe O + O O O 3 1 5 2 4 Example.2.18 O O O H H + O O - 27 -
  • 28. Mannich reaction: O O O H R' R CH3 + H C H + R'2NH R N formaldehyde R' mechanism: H R' H R' R'2NH H N CH2 H O N CH2 OH2 R' R' O I Me R CH2 R' O N CH2 CH2 C R R' R' Me H O R N CH2 CH C R R' O R' Me I Me was attacked by N thus N bearing +ve charge make easy remove N R' Application for mannich reaction O O O H N R' + CH2O + R'2NH R' mechanism: H R' H R' R'2NH H N CH2 H O N CH2 OH2 R' R' O I Me O R' N CH2 R' O R' Me H O N CH2 R' - 28 -
  • 29. Example.2.19 O O O O Ph 1 2 O Ph Ph + 4 3 5 O O + CH2O remember Mannich reaction Example.2.20 O O O O NR3 NR2 + CH2 NR2 + CH2 NR2 OH O O O H + HO CH2 NR2 + HO CH2 NHR2 + CH2O + R2NH ** α-Hydroxy carbonyl compounds Ph OH Ph O + COOH α C OH Ph Ph O or CN Synthesis: O Ph OH CN Ph NaOH OH C OH Ph Me H2O H Ph CN Ph O T.M - 29 -
  • 30. Example.2.21 OH O O O COOH 2 1 H + + H C OH or CN C 3 C EtO O EtO2C O EtO O C O + EtO H EtO Br EtO C O + CH2COOEt Synthesis: O O O C OEt C OEt O C OEt OEt H2C OEt H2C OEt + H2C C C EtO OEt O O OEt O O H O OEt H C OEt H C OEt Br CO2Et CO2Et CO2Et H2C OH CN O C OH HO/H2O EtO2C - 30 -
  • 31. Example.2.22 Ph OH O OH OH + 2PhMgBr Ph EtO OH OH H OH + CN O Synthesis: O CH2 O CN OH OH OH CN HO/H2O HO C K2CO3 OH CHO H C H HO O O OH OH Ph 2PhMgBr EtO EtOH/H OH Ph OH OH T.M Example.2.23 + CN HOOC NH H NH H + NH3 H O Reminder: NH2 NH2 NH3 RCHO R C CN R C COOH CN H H mechanism: O OH H CN H HO/H2O NH3 R C H R C CN R C COOH R C H R C H NH NH2 NH2 NH3 NH2 - 31 -
  • 32. Example.2.24 Ph Ph Ph Ph Ph Ph O O HO + O Ph O Ph Ph Ph HO Ph Ph FGI Ph O 2PhCH2MgBr + EtO H OH Ph Synthesis: O OH Ph OH Ph O CN Ph MgBr CrO3 Ph C H Ph C H HO/H2O Ph O O O OH Ph Ph O Ph + 2PhCH2MgBr CrO3 H C OEt OH O Ph Ph Ph H Ph Ph Ph Ph Ph O HO acid O + O heat O Ph Ph Ph Ph Ph HO Ph T.M Reminder: O OH LiAlH4 C H - 32 -
  • 33. ** 1,2-diol Reminder: HO OH KMnO4 or OsO4 hydration OH OH OH Al2O3 OH One useful radical reaction is the pinacol reduction: HO OH Mg - Hg O benzene HO OH O PPh3 FGI + remember Witting reaction Example.2.25 OH OH Ph3P O + Ph Ph Ph Example.2.26 H O H O CO2Me CO2Me CO2Me HO CO2Me + α + O HO β H H α−β unsaturated carbonyl - 33 -
  • 34. Example.2.27 O CO2H C H + Ph3P CH2 CO2H O α FG + C H I β OH OH ** The Pinacol-Pinacolone rearrangement HO OH O R4 R1 R4 H R3 R2 R3 R1 R2 mechanism: HO OH2 HO O R4 H R1 R4 HO OH R1 R4 R1 R4 R3 R2 R3 R2 R3 R1 R2 R2 R3 Example.2.28 O O reverse -pinacol OH OH pinacol 2 reduction rearrangement Synthesis: OH OH OH2 OH Mg - Hg OH O H+ benzene T.M - 34 -
  • 35. A closely allied reductive linking of carbonyl groups is an intramolecular version with esters, called the acyloin reaction, which again gives a 1,2-dioxygenated skeleton: C O CO2Et Na (CH2)n (CH2)n Xylene CO2Et CHOH Mechanism of Acyloin Condensation Na+ Na+ Na+ Na+ O O O O O O O 2 0 + -2NaOMe R OMe + 2Na R OMe R OMe MeO OMe R R R R Na+O O Na+ O O 0 Na+ O O Na+ H O HO OH O OH 2Na 2 tautomerism R R R R R R -2NaOH R R R R Example.2.29 CO2Et CO2Et O acyloin Diels–Alder 2 + OH CO2Et CO2Et - 35 -
  • 36. Example.2.30 CO2Et C CO2Et CO2Et + C CO2Et CO2Et CO2Et OMe OMe OMe Ph CH2Br + HO C O H OH OMe OMe Synthesis: Ph3P O CH3 CH2Br CH2Br HC C Br2/light Me2SO4 i) Ph3P H ii) Base CHO Ph iii) Ph OH OH OMe OMe CO2Et OMe CO2Et C C CO2Et CO2Et OMe OMe T.M - 36 -
  • 37. Example.2.31 CO2Et CO2Et CO2Et C O O O + CO2Et C CO2Et CO2Et Synthesis: CO2Et CO2Et C O O C CO2Et CO2Et T.M ** Allan-Robinson reaction: Synthesis of flavones O O O R' OH R' O R R'CO2Na R R O O mechanism: OH O O H OH OH HO R'CO2Na R' R R' O O R' R O H O R O R R O O O R' R O - 37 -
  • 38. ** Bichler- apieralski reaction Synthesis of dihydro isoquinoline from β-phenylethylamide using phosphorus oxychloride. POCl3 HN N O R R mechanism: O HN Cl2P Cl HN N H N H O OPOCl2 H R R R OPOCl2 R OPOCl2 N R Example.2.32 H2C H3C O OH FGI + Ph3P CH2 Synthesis: i) Ph3P Br CH3 Ph3P CH2 ii)base O PPh3 O PPh3 CH2 CH2 - 38 -
  • 39. Example.2.33 O H N N N OH + H Synthesis: O H N N OH acid N H heat + ** Bartoli Indol synthesis Synthesis of 7-substituted indol from Ortho-substituted nitro benzene and vinyl Grignard reagent. i) MgBr NO2 ii) H3O N R H mechanism: MgBr O O MgBr N N N O N O O MgBr O MgBr H H H HO H O MgBr O N N N H H MgBr - 39 -
  • 40. ** Benzilic acid rearrangement Rearrangment of Benzil to Benzilic acid via aryl migration. O O KOH Ar Ar C OH C Ar Ar O OH Benzil Benzilic mechanism: Ar O O O O OH Ar Ar Ar Ar Ar Ar C O C OH C O acidic C OH C Ar Ar workup Ar O O OH OH O OH a proton transfer leads to formation of carboxylate anion ** Benzoin condensation It's a cyanide-catalyzed condensation of aryl aldehyde to Benzoin. OH Ar H CN Ar Ar O O aryl aldehyde Benzoin mechanism: O Ar H CN CN CN CN -H O Ar +H Ar Ar H Ar H Ar O CN O OH OH Ar H OH OH OH CN Proton Ar Ar Ar Ar transfer Reminder: O O CN such H bond to Carbon connect with two electron withdrawal groups Ar H thus this H is Acidic. OH - 40 -
  • 41. ** Birch reduction The reduction of aromatic substrates with alkali metal, alcohol in liquid ammonia , known as “Birch reduction” 1) Benzene ring with an electron donating substituent. X X Na,liq,NH3 ROH X=OR,R,NH2 X X X X H Single Electron Transfere H H H OR SET H H Radical anion X X H +e- H H H OR 2) Benzene ring with an electron withdrawing substituent: W W Na,liq,NH3 W=CO2H,CO2R,COR,CONR2,CN,Ar W W W W +e- +e- H NH2 H H H Radical anion W W H NH2 H H - 41 -
  • 42. References: 1) Stuart G. Warren; designing organic synthesis , John Wiley,1978 2) CM3001 Dr.Alan Ford (lab 415) ,text :Willis&Wills organic Synthesis (OUP) - 42 -