3. • Sequence motif viewer and editor for the Mac
Saturday, 27 June 2009
4. • Sequence motif viewer and editor for the Mac
• Philosophy:
• let’s make motif analysis easy enough for a biologist
Saturday, 27 June 2009
5. • Sequence motif viewer and editor for the Mac
• Philosophy:
• let’s make motif analysis easy enough for a biologist
• reuse and bundle existing tools where possible
Saturday, 27 June 2009
6. • Sequence motif viewer and editor for the Mac
• Philosophy:
• let’s make motif analysis easy enough for a biologist
• reuse and bundle existing tools where possible
• Built-in NestedMICA motif discovery suite
Saturday, 27 June 2009
7. • Sequence motif viewer and editor for the Mac
• Philosophy:
• let’s make motif analysis easy enough for a biologist
• reuse and bundle existing tools where possible
• Built-in NestedMICA motif discovery suite
• Other built-in analysis tools will hopefully follow
Saturday, 27 June 2009
14. PDF output
motif0
TTC AAA
C
A
G
GG
CA
AT
C
G
A
T
G
C
TTG
CT
GC
motif1
G
TTTGCC
CC
A
ACA
G
G
ACTTC
TG
A
AG
G
A
T
motif2
T G
CC
A A
GAT
T
G
A C
GC
A
C
T
A
T
GG
GTCA
C
TTT
ACC
GA G
motif3
AAAACT
GGC
T
CC
T
TTGGAC
G
GC
T
AC
G
A
T
motif4
TTT
C
G
AA
C
G
C
A
G
T
G
CT
A
CAG
G
A
C
G
TC T
A
A
TC
GT
CG
A
Saturday, 27 June 2009
22. Under the hood
• Written in Objective-C 2.0 (requires Leopard)
Saturday, 27 June 2009
23. Under the hood
• Written in Objective-C 2.0 (requires Leopard)
• Includes a sequence motif library xms-cocoa
Saturday, 27 June 2009
24. Under the hood
• Written in Objective-C 2.0 (requires Leopard)
• Includes a sequence motif library xms-cocoa
• Multithreaded
Saturday, 27 June 2009
25. Under the hood
• Written in Objective-C 2.0 (requires Leopard)
• Includes a sequence motif library xms-cocoa
• Multithreaded
• Works on PPC, i386, x86-64 (Universal Binary)
Saturday, 27 June 2009
26. Under the hood
• Written in Objective-C 2.0 (requires Leopard)
• Includes a sequence motif library xms-cocoa
• Multithreaded
• Works on PPC, i386, x86-64 (Universal Binary)
• LGPL licensed
Saturday, 27 June 2009
28. Future
• More analysis tools:
scanning, motif hit P-value calculation
Saturday, 27 June 2009
29. Future
• More analysis tools:
scanning, motif hit P-value calculation
• Do you have a tool you would like to have
integrated to iMotifs?
Come talk with me (or msg matias.piipari@gmail.com)
Saturday, 27 June 2009
30. Future
• More analysis tools:
scanning, motif hit P-value calculation
• Do you have a tool you would like to have
integrated to iMotifs?
Come talk with me (or msg matias.piipari@gmail.com)
• Available at http://imotifs.pearcomp.com
Saturday, 27 June 2009
