7. ● RNA, enveloped
● Viral family: Orthomyxoviridae
● Size:
80-200nm or .08 – 0.12 μm (micron)
in diameter
● Three types
● A, B, C
● Surface antigens
● H (haemaglutinin)
● N (neuraminidase)
Influenza Virus
8. 8
Influenza viruses are divided scientifically into three types
designated A, B, and C.
Influenza A viruses are further classified into different
subtypes according to combinations of various virus
surface proteins or antigens : hemagglutinin (HA) &
neuraminidase (NA) .
There are 16 known H subtypes and 9 known N subtypes.
10. 10
Many different combinations of HA and NA proteins are
possible, all of which have been found in wild birds, which are
the natural reservoir of influenza A viruses.
Among many subtypes of influenza A viruses,only influenza
A(H1N1) and A(H3N2) are currently circulating among humans
as seasonal Influenza strains.
•
11. Wild birds are “natural” reservoir for all
influenza A subtypes
13. Avian Influenza AAvian Influenza A
virusesviruses
H1 - H16
N1 - N9
H1 - H3
N1 –N2
Human Influenza
A Viruses
Natural Reservoir for New Human Influenza A Virus
Subtypes: Waterfowl (Aquatic Ducks, Geese)
14. All subtypes of influenza A are maintained in
aquatic birds
In human
H1, H2, H3 N1, N2
The current subtypes of influenza A viruses found in
people are
A (H1N1) and A (H3N2).
15. 15
Influenza viruses
●Influenza A is subtyped by surface proteins .
● The subtypes of influenza A virus demonstrate
species specificity and those, which infect
animals do not usually cause infection in humans .
● Influenza B and C viruses are not divided into
subtypes.
16. 16
Influenza viruses
● Influenza A Virus
Wild birds are “natural” reservoir for all
influenza A subtypes
Epidemics and pandemics
Animals and humans
Can infect many animals – ducks, chickens,
pigs, whales, horses and seals.
Accounts for >80% of influenza infections of
human each year - All ages.
17. 17
Influenza viruses
● Type B
Milder epidemics
Humans only
Primarily affects children
● Type C
Causes mild disease
humans are
natural hosts but isolates also found in pigs does
not cause epidemics
18. Influenza Types – A and B
Type A
(Seasonal, avian, swine influenza,….)
Type B
(Seasonal influenza)
Can cause significant disease
Generally causes milder disease
but may also cause severe disease
Infects humans and other
species (e.g., birds; H5N1)
Limited to humans
Can cause epidemics and pandemics
(worldwide epidemics)
Generally causes milder epidemics
19. 19
Seasonal influenza viruses cause annual epidemics that peak
during winter in temperate regions
Influenza A and influenza B are responsible for most clinical
illness, can cause seasonal influenza epidemics in humans.
Influenza type C usually causes either a very mild respiratory
illness or no symptoms at all; it does not cause epidemics and
does not have the severe public health impact of influenza
types A and B.
20. How does influenza virus change?
Type A viruses tend to undergo changes (from time to time) in their
surface antigens or proteins
●Minor changes Antigenic drift
●Major changes Antigenic shift
21. 21
Antigenic Drift
Yearly epidemics occur because of a process called antigenic
drift.. Because of imperfect manufacturing, in other words
genetic mutations, of progeny viruses in the “cellular factory,”
small changes occur in the hemagglutinin and/or
neuraminidase of circulating strains.
These changes can prevent the antibodies generated by the
body’s immune system, either from past infection or
vaccination, from efficiently neutralizing the virus. . .
In that setting, reinfection with a mutant virus can occur.
22. How do yearly epidemics occur?
Answer: A process called antigenic DRIFT.
Imperfect “manufacturing” of virus
– Small changes in H and N
– Partial immunity in population
o Incomplete protection; still get sick
o Need new flu vaccine every year
H3N2 H3N2
Immune System:
“Do I know you?
You look vaguely
familiar!”
23. 23
Antigenic Drift
This term denotes MINOR changes in hemagglutinin and
neuraminidase of influenza virus.
This results from mutation in the RNA segments coding for
either the HA or NA
This involves no change in serotype; there is merely an
alteration in amino acid sequence of HA or NA leading to
change in antigenicity (point mutation(.
25. 25
Antigenic Drift
Is a mechanism for variation in viruses that involves the
accumulation of mutations within the genes that code
for antibody-binding sites.
This results in a new strain of virus particles which cannot be
inhibited as effectively by the antibodies that were originally
targeted against previous strains, making it easier for the
virus to spread throughout a partially immune population.
Antigenic drift occurs in both influenza A and influenza B
viruses.
26. 26
Antigenic Drift
Point mutations in the antigenic sites reduce or inhibit the
binding of neutralising antibodies, thereby allowing a new
strain to spread within a non-immune population. This
phenomenon is called antigenic drift.
The mutations that cause the antigenic drift are the
molecular explanation for the seasonal influenza epidemics
during winter time in temperate climatic zones.
27. 27
Antigenic Drift
Antigenic drift is the reason that 1 or 2 of the three virus
strains in the vaccine are updated every year based on
what’s been circulating around the world. This necessitates
the creation of a new flu vaccine every year. .
30. Antigenic shift occurs only in Type A
Occurs due to genetic exchange or reassortment
The genetic content of influenza viruses is segmented
into eight genes , this facilitates reassortment , in which
genetic material is exchanged between human & avian
viruses during co-infection of a human or pig (known
as mixing vessel) .
Antigenic shift
35. What drives the occurrence of a pandemic?
Answer:
Instead of antigenic DRIFT occurring,
an antigenic…
…happens.
Immune
System: “Oh
my gosh…I
don’t know you
at all!”
H?N?
37. A new influenza virus emerges to
which the general population has
little/no immunity
The new virus must be able to replicate
in humans and cause disease
The new virus must be efficiently
transmitted from one human to
another
Prerequisites for pandemic influenza
38. Pandemic influenza in the 20th
Century
1920 1940 1960 1980 2000
H1N1 H2N2 H3N2
1918 “Spanish Flu” 1957 “Asian Flu” 1968 “Hong Kong Flu”
20-40 million deaths 1 million deaths 1 million deaths
40. The influenza pandemic of 1918 killed
more humans than any other disease in a
period of similar duration in the history of
the world.
Alfred W. Crosby, historian & author
America’s Forgotten Pandemic: The Influenza of 1918
The “Forgotten Pandemic”
42. History of pandemic influenzaHistory of pandemic influenza
History of pandemic influenza
43. MOST FATAL EVENT
IN HUMAN HISTORY
WORLDWIDE FATALITIES:
20-40 MILLION
US FATALITIES:
675,000
U.S. LIFE EXPECTANCY AT BIRTH
35
40
45
50
55
60
65
70
1900 1906 1912 1918 1924 1930 1936 1942 1948 1954 1960
Date
Age
44.
45. Emergency hospital, Camp Funston, Kansas 1918
Courtesy of National Museum of Health and Medicine
48. Antigenic Shift
Novel HA or NA
Reassortment of the
segment genome
from two different
subtypes
Antigenic Drift
Point mutation in HA
New strains of the
same subtype
Seasonal epidemics
Requirement for a new
vaccine each year
PANADEMIC
49.
50. 50
Seasonal influenza is characterized by a sudden onset of
high fever, cough (usually dry), headache, muscle and joint
pain, severe malaise (feeling unwell), sore throat and
runny nose.
Most people recover from fever and other symptoms
within a week without requiring medical attention.
But influenza can cause severe illness or death especially in
people at high risk .
The clinical burden of Seasonal influenza
51. 51
Seasonal influenza epidemics can cause febrile illnesses
that range in severity from mild to debilitating and can
lead in some instances to hospitalization and even cause
death, mainly among high-risk groups.
Seasonal influenza is a serious public health problem, it has
been estimated that in developed countries, annual
influenza epidemics infect about 10–20% of the population
each season.
Is Flu Serious ?
52. 52
Worldwide, annual influenza epidemics are estimated to result
in ~1 billion cases of flu, ~3–5 million cases of severe illness
and 300 000–500 000 deaths annually.
Yearly influenza epidemics can seriously affect all populations,
but the highest risk of complications occur among children
younger than age 2 years, adults aged 65 years or older,
pregnant women, and people of any age with certain
chronic medical conditions , or weakened immune systems .
Is Flu Serious ?
53. 53
When animal influenza viruses infect their natural animal host,
they are named for that host , as in avian influenza viruses ,
swine influenza viruses , equine influenza viruses, etc.
As such, the term “swine flu” refers to swine influenza viruses
infecting swine, and is never used when such viruses infect
people.
Zoonotic Influenza ?
55. 55
Avian influenza (AI), commonly called bird flu, is an infectious
viral disease of birds.
Most avian influenza viruses do not infect humans; however
some, such as A (H5N1) and A (H7N9) , Highly pathogenic
avian influenza viruses , cross the species barrier have
caused serious infections in people.
56. 56
Avian influenza viruses are divided into 2 groups based on
their ability to cause disease in poultry
1)Highly pathogenic viruses result in high death rates (up to
100% mortality within 48 hours) in some poultry species.
2)Low pathogenicity viruses also cause outbreaks in poultry
but are not generally associated with severe disease.
57. 57
Human infections with avian and zoonotic influenza viruses
have been reported.
Human infections are primarily acquired through direct
contact with infected animals or contaminated environments,
but do not result in efficient transmission of these viruses
between people.
58. 58
Avian and other zoonotic influenza infections in humans may
cause disease ranging from mild conjunctivitis to severe
pneumonia and even death.
The majority of human cases of A(H5N1) and A(H7N9) infection
have been associated with direct or indirect contact with
infected live or dead poultry.
Controlling the disease in the animal source is critical to
decrease risk to humans .
59. A new influenza virus emerges to
which the general population has
little/no immunity
The new virus must be able to replicate
in humans and cause disease
The new virus must be efficiently
transmitted from one human to
another
The A(H5N1) and A(H7N9) AI viruses remain two of the
avian influenza viruses with pandemic potential
NOT TO
DATE
The internal antigens (M1 and NP proteins) are the type-specific proteins (type-specific antigens) used to determine if a particular virus is A, B or C. The M1 proteins of all members of each type show cross reactivity. The NP proteins of all members of each type also show cross reactivity.
The external antigens (HA and NA) show more variation and are the subtype and strain-specific antigens. These are used to determine the particular strain of influenza A responsible for an outbreak
Flu strains are named after their types of hemagglutinin and neuraminidase surface proteins, so they will be called, for example, H3N2 for type-3 hemagglutinin and type-2 neuraminidase.
If two different strains of influenza infect the same cell simultaneously, their protein capsids and lipid envelopes are removed, exposing their RNA, which is then transcribed to mRNA.
The host cell then forms new viruses that combine antigens; for example, H3N2 and H5N1 can form H5N2 this way.
Because the human immune system has difficulty recognizing the new influenza strain, it may be highly dangerous.
Influenza A viruses are found in many different animals, including ducks, chickens, pigs, whales, horses, and seals.
There are 16 different haemaglutinin subtypes and 9 different neuraminidase subtypes, all of which have been found among influenza A viruses in wild birds.
Wild birds are the primary natural reservoir for all subtypes of influenza A viruses and are thought to be the source of influenza A viruses in all other animals.
Most influenza viruses cause asymptomatic or mild infection in birds; however, the range of symptoms in birds varies greatly depending on the strain of virus.
Infection with certain avian influenza A viruses (for example, some strains of H5 and H7 viruses) can cause widespread disease and death among some species of wild and especially domestic birds such as chickens and turkeys.
Pigs can be infected with both human and avian influenza viruses in addition to swine influenza viruses. Infected pigs get symptoms similar to humans, such as cough, fever, and runny nose.
Because pigs are susceptible to avian, human and swine influenza viruses, they potentially may be infected with influenza viruses from different species (e.g., ducks and humans) at the same time. If this happens, it is possible for the genes of these viruses to mix and create a new virus.
While there are three types of influenza viruses—A, B, and C—only two cause significant disease in humans (A and B). Type B influenza viruses are limited to humans, whereas Type A viruses can cause severe disease in humans and affect more species.
Influenza Type A
Type A influenza is considered to cause the most serious disease among the influenza viruses, although not all strains cause clinical disease. Influenza A can cause severe epidemics (as well as severe worldwide epidemics; or pandemics) among all ages. Influenza type A infects multiple species including people, birds, pigs, horses, and other animals. Wild birds are the natural hosts for these viruses.
Influenza Type B
Influenza B viruses are usually found only in humans. Influenza B viruses can cause some morbidity and mortality among humans, but in general are associated with less severe epidemics (chiefly among children) than influenza A viruses. Although influenza type B viruses can cause human epidemics, they have not caused pandemics.
Because avian influenza and all pandemic viruses are of the Type A variety, we will focus this session on Type A influenza viruses.
Yearly epidemics occur because of a process called antigenic drift. The viral H and N components are sometimes called antigens by scientists. Because of imperfect manufacturing, in other words genetic mutations, of progeny viruses in the “cellular factory,” small changes occur in the hemagglutinin and/or neuraminidase of circulating strains. These changes can prevent the antibodies generated by the body’s immune system, either from past infection or vaccination, from efficiently neutralizing the virus. In that setting, reinfection with a mutant virus can occur. Antigenic drift is the reason that 1 or 2 of the three virus strains in the vaccine are updated every year based on what’s been circulating around the world. This necessitates the creation of a new flu vaccine every year.
a pandemic is an epidemic occurring worldwide or over a very wide area, crossing international boundaries and usually affecting large numbers of people. The new virus affects only birds and animals at first, but gradually changes to affect people as well. A pandemic begins when this new virus is passed easily from person to person.
2 of the 3 prerequisites for a human pandemic have been met
A novel influenza virus has emerged and the general population has demonstrated little or no immunity
And the new virus has been able to replicate in humans
The main questions that remains are:
Will the virus will develop into a form that is efficiently transmitted from one human to another? (thus meeting the criteria for a pandemic)
If so, where, when, how quickly, and how severely?
Earlier, you saw computer modeling of a future pandemic, this shows what happened in 1918.
2 of the 3 prerequisites for a human pandemic have been met
A novel influenza virus has emerged and the general population has demonstrated little or no immunity
And the new virus has been able to replicate in humans
The main questions that remains are:
Will the virus will develop into a form that is efficiently transmitted from one human to another? (thus meeting the criteria for a pandemic)
If so, where, when, how quickly, and how severely?