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Laboratory Safety
Monolayer culture




• Requires substrate or solid surface
 for attachment and growth
       : Anchorage dependent of growth


• Contact inhibition of movement Monolayer
Primary cell culture


         + enzymes




                       time
Subculture


     enzymes




               time
Transformation
loss of contact inhibition
Stationary cultivation
Culture flask




Culture Plate
Medium Constituents

Balance salt solution : Phosphate buffer, Mg , Ca
Inorganic ions and trace elements
 : for membrane potential and osmotic pressure
 : buffer


Energy source : glucose, glutamine
Amino acid : metabolism and biological synthesis
Role of Serum



• Buffer, Chelator, Carrier proteins
• Bind to toxin
• Protease inhibitor
• Promotes attachment of cell to substratum
• Source of Intermediate metabolites,
           hormone and growth factor
Primary cell culture and Establishment cell line

 • Preparation of cell suspension from intact tissue

   . Single cell preparation
    : use mechanical, Chemical, and/or enzymatic method


   . Disaggregate or dissociate cell
     : cutting, homogenizing, rotary shaker, vortex,
       pipette
• Preparation of cell suspension from intact tissue (cont.)

    Enzymes
     • Trypsin (crude)
         : from cattle and pig’s pancrease
• Preparation of cell suspension from intact tissue (cont.)

              . Removal of tissue and place in Isotonic
                (or growth medium with antibiotic)


         . Trim off unwanted parts and cut into smaller pieces


                     . Dissociate cells using enzyme


                 . Remove large debris and wash cells
• Preparation of cell suspension from intact tissue (cont.)



          . Suspend cells in growth medium accordingly



             . Pipette into culture vessel and incubate
Common Cell line (cont.)

• HeLa
         cancer tissue:cervical carcinoma
          : harbors HPV type     genome


• Vero
         : from African green monkey kidney
         : preparation of Poliovirus vaccine
Work in Safety cabinet Class-II

UV
ethanol for decontamination

Culture medium and Reagent
     1.PBS
     2. Growth medium
      : %FCS-DMEM
     3. Trypsin-Versene
Subpassage



       Remove growth medium


        Wash with PBS


Detach cell with Trypsin-Versene


          Remove TV
Refresh with growth medium


         Mix cell by pipette



   Count and calculate number of cell


: Hemacytometer
Detection of virus in cell culture:
•Cytopathic effect -CPE:changed monolayer
architecture, the entire cell/ nucleus thickening and
shrinking (pycnosis), inclusion bodies formation, giant cell
(syncytia)formation, nucleolar displacement,rearangement
and margination of the nuclear
chromatin,vacuolization,the type of CPE depends on virus
specifity and the kind of cells, polio virus, adeno
virus, HSV, CMV;
•Viral hemagglutination–direct reaction with red
cells, influenza;
•Hemadsorption –adsorption of erythrocytes to infected
cells;parainfluenza, influenza
•Plaques effect –clear areas appear in culture (PFU)due to
cell lysis;
Hemagglutination test: method
                       1:8


                             1:2         1:2        1:2        1:2         1:2
           virus



serial dilution

                   8               16          32         64         128         256
 mix with red
 blood cells


  side view




  top view



                                        Titer = 32 HA units/ml
Hemagglutination assay: influenza virus




Hemagglutination assay. Seven different samples of influenza virus, numbered 1 through 7 at the left, were serially diluted as indicated at the
top, mixed with chicken red blood cells (RBC), and incubated on ice for 1 to 2 hours. Wells in the bottom row contain no virus. Agglutinated RBCs coat
wells evenly, in contrast to nonagglutinated cells, which form a distinct button at the bottom of the well. The HA titer, shown at the right, is the last
dilution that shows complete hemagglutination activity. (From Fields Vriology (2007) 5th edition, Knipe, DM & Howley, PM, eds, Wolters
Kluwer/Lippincott Williams & Wilkins, Philadelphia Fig. 2.9)
Plaque
Assays
Quantitation of viruses
     a. TCID50(50% Tissue culture infected dose
): Infections dose of 50% CPE of tissue cultures
caused by viral minimum infected dose is called
TCID50
     b. PFU : under controlled condition, single
plague can arise from a single infection virus
particle, termed a plague-forming unit.
Plaque assay: method

                   1:100

                         1:10          1:10            1:10          1:10          1:10
     virus


serial dilution


                  10-2          10-3           10-4           10-5          10-6          10-7

 plate 1 ml



   plaques


              (100,000)     (10,000)          (1000)          100            10             1

                                   Titer = 1 x 107 pfu/ml
Virus cultivation 2. Inoculation of embryonated chick eggs

•
                            USE OF FERTILE EGGS
    Largely replaced by use of TC

•   Still useful in cultivation and detection of some viruses, flu

•   Three parts of the egg are of use
     – A The amniotic cavity:
          • Surrounds the embryo & lined by a single layer of epithelial cells.
          • The amniotic fluid bathes the external surface of the embryo and comes into contact with
            the respiratory and alimentary tracts.

     –   B The allantoic cavity:
           • Comprises an outgrowth of the hind-gut of the embryo and is lined with endoderm.

•  Both are useful for the cultivation of viruses, particularly
           • orthomyxoviruses (e.g., influenza) and paramyxoviruses (e.g., mumps).
Membranes major source of cells in which virus growth occurs, but the embryo may also become
   infected.
•  The allantoic cavity is routinely used because it is technically much simpler to inoculate.
•  However, some viruses (e.g., human influenza isolates) may need to be egg-adapted by growth in the
   amniotic cavity before they will grow efficiently in the allantoic cavity; the reason for this is not
   known.
C The chorio-allantoic membrane : The membrane consists of an outer layer of stratified epithelium
   which constitutes the respiratory surface of the egg, and an inner layer of endoderm (the lining of
   the allantoic cavity). The membrane may be used as a cell sheet provided it is first dropped away
   from the shell membrane. Dermatropic viruses (poxviruses and some herpes viruses) will grow on
   this membrane, and at low concentrations, will give discrete foci of infection which consist of
   centres of cell proliferation and necrosis (pocks). The membrane may therefore be used to assay
   these viruses. In addition, different viruses cause pocks of different colour and morphology, and
   this is of diagnostic value for distinguishing between different poxviruses.
Growth of virus on embryonated eggs




    Davis, Duylbecco, Eisen, Ginsberg “Microbiology” 4th ed, J.B. Lippincott 1990, Fig. 48-1
•production of pocks or plaques on chorioallantoic
membrane(herpes, smallpox, vaccinia);

•development of hemagglutinins in embryonic
fluid(influenza);
•death of embryo -encephalitis viruses;



Convenient, inexpensive, the viral suspension
       injected into the fluid of the egg, viral
       growth is detected by death of the
       embryo, or lesion on the membrane of
       the egg.
  It is the most common method for viral
       growth and isolation , and used for
       preparation of viral vaccine.

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Diagnostic 2

  • 1.
  • 2.
  • 4.
  • 5.
  • 6.
  • 7.
  • 8.
  • 9. Monolayer culture • Requires substrate or solid surface for attachment and growth : Anchorage dependent of growth • Contact inhibition of movement Monolayer
  • 10. Primary cell culture + enzymes time
  • 11. Subculture enzymes time
  • 15. Medium Constituents Balance salt solution : Phosphate buffer, Mg , Ca Inorganic ions and trace elements : for membrane potential and osmotic pressure : buffer Energy source : glucose, glutamine Amino acid : metabolism and biological synthesis
  • 16. Role of Serum • Buffer, Chelator, Carrier proteins • Bind to toxin • Protease inhibitor • Promotes attachment of cell to substratum • Source of Intermediate metabolites, hormone and growth factor
  • 17. Primary cell culture and Establishment cell line • Preparation of cell suspension from intact tissue . Single cell preparation : use mechanical, Chemical, and/or enzymatic method . Disaggregate or dissociate cell : cutting, homogenizing, rotary shaker, vortex, pipette
  • 18. • Preparation of cell suspension from intact tissue (cont.) Enzymes • Trypsin (crude) : from cattle and pig’s pancrease
  • 19. • Preparation of cell suspension from intact tissue (cont.) . Removal of tissue and place in Isotonic (or growth medium with antibiotic) . Trim off unwanted parts and cut into smaller pieces . Dissociate cells using enzyme . Remove large debris and wash cells
  • 20. • Preparation of cell suspension from intact tissue (cont.) . Suspend cells in growth medium accordingly . Pipette into culture vessel and incubate
  • 21. Common Cell line (cont.) • HeLa cancer tissue:cervical carcinoma : harbors HPV type genome • Vero : from African green monkey kidney : preparation of Poliovirus vaccine
  • 22. Work in Safety cabinet Class-II UV ethanol for decontamination Culture medium and Reagent 1.PBS 2. Growth medium : %FCS-DMEM 3. Trypsin-Versene
  • 23. Subpassage Remove growth medium Wash with PBS Detach cell with Trypsin-Versene Remove TV
  • 24. Refresh with growth medium Mix cell by pipette Count and calculate number of cell : Hemacytometer
  • 25. Detection of virus in cell culture: •Cytopathic effect -CPE:changed monolayer architecture, the entire cell/ nucleus thickening and shrinking (pycnosis), inclusion bodies formation, giant cell (syncytia)formation, nucleolar displacement,rearangement and margination of the nuclear chromatin,vacuolization,the type of CPE depends on virus specifity and the kind of cells, polio virus, adeno virus, HSV, CMV; •Viral hemagglutination–direct reaction with red cells, influenza; •Hemadsorption –adsorption of erythrocytes to infected cells;parainfluenza, influenza •Plaques effect –clear areas appear in culture (PFU)due to cell lysis;
  • 26. Hemagglutination test: method 1:8 1:2 1:2 1:2 1:2 1:2 virus serial dilution 8 16 32 64 128 256 mix with red blood cells side view top view Titer = 32 HA units/ml
  • 27. Hemagglutination assay: influenza virus Hemagglutination assay. Seven different samples of influenza virus, numbered 1 through 7 at the left, were serially diluted as indicated at the top, mixed with chicken red blood cells (RBC), and incubated on ice for 1 to 2 hours. Wells in the bottom row contain no virus. Agglutinated RBCs coat wells evenly, in contrast to nonagglutinated cells, which form a distinct button at the bottom of the well. The HA titer, shown at the right, is the last dilution that shows complete hemagglutination activity. (From Fields Vriology (2007) 5th edition, Knipe, DM & Howley, PM, eds, Wolters Kluwer/Lippincott Williams & Wilkins, Philadelphia Fig. 2.9)
  • 29. Quantitation of viruses a. TCID50(50% Tissue culture infected dose ): Infections dose of 50% CPE of tissue cultures caused by viral minimum infected dose is called TCID50 b. PFU : under controlled condition, single plague can arise from a single infection virus particle, termed a plague-forming unit.
  • 30. Plaque assay: method 1:100 1:10 1:10 1:10 1:10 1:10 virus serial dilution 10-2 10-3 10-4 10-5 10-6 10-7 plate 1 ml plaques (100,000) (10,000) (1000) 100 10 1 Titer = 1 x 107 pfu/ml
  • 31. Virus cultivation 2. Inoculation of embryonated chick eggs • USE OF FERTILE EGGS Largely replaced by use of TC • Still useful in cultivation and detection of some viruses, flu • Three parts of the egg are of use – A The amniotic cavity: • Surrounds the embryo & lined by a single layer of epithelial cells. • The amniotic fluid bathes the external surface of the embryo and comes into contact with the respiratory and alimentary tracts. – B The allantoic cavity: • Comprises an outgrowth of the hind-gut of the embryo and is lined with endoderm. • Both are useful for the cultivation of viruses, particularly • orthomyxoviruses (e.g., influenza) and paramyxoviruses (e.g., mumps). Membranes major source of cells in which virus growth occurs, but the embryo may also become infected. • The allantoic cavity is routinely used because it is technically much simpler to inoculate. • However, some viruses (e.g., human influenza isolates) may need to be egg-adapted by growth in the amniotic cavity before they will grow efficiently in the allantoic cavity; the reason for this is not known. C The chorio-allantoic membrane : The membrane consists of an outer layer of stratified epithelium which constitutes the respiratory surface of the egg, and an inner layer of endoderm (the lining of the allantoic cavity). The membrane may be used as a cell sheet provided it is first dropped away from the shell membrane. Dermatropic viruses (poxviruses and some herpes viruses) will grow on this membrane, and at low concentrations, will give discrete foci of infection which consist of centres of cell proliferation and necrosis (pocks). The membrane may therefore be used to assay these viruses. In addition, different viruses cause pocks of different colour and morphology, and this is of diagnostic value for distinguishing between different poxviruses.
  • 32. Growth of virus on embryonated eggs Davis, Duylbecco, Eisen, Ginsberg “Microbiology” 4th ed, J.B. Lippincott 1990, Fig. 48-1
  • 33. •production of pocks or plaques on chorioallantoic membrane(herpes, smallpox, vaccinia); •development of hemagglutinins in embryonic fluid(influenza); •death of embryo -encephalitis viruses; Convenient, inexpensive, the viral suspension injected into the fluid of the egg, viral growth is detected by death of the embryo, or lesion on the membrane of the egg. It is the most common method for viral growth and isolation , and used for preparation of viral vaccine.