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Using a novel whole slide imaging software platform for an
international multi-center validation study to assess the
histological growth pattern of liver metastases
Yves Sucaet, Wim Waelput, Peter Vermeulen and Gert Van den Eynden
Also on behalf of the Liver Metastasis Research Network (www.lmrn.org)
Introduction
• ‘Growth pattern’ of primary tumours and their
metastases is heterogeneous
• Growth pattern
– = the histological result/image of the way
malignant tumours interact with the pre-existing
normal tissue in their host organ
– Integrative histological parameter, which is the
result of all involved interactions
– Easy to assess by a pathologist using a (simple) HE
staining and a microscope
G. Van den Eynden et al., Cancer Research 2013
Clinically Relevant ?
Eefsenetal.JOncol.2012;Epub2012Aug2.
Van den Eynden G., Bird N et al. Clin Exp Metastasis 2012
Unpublished
To organize an international multi-center validation
study on the assessment of the histological growth
pattern of liver metastases of solid tumours
1. Teaching part
2. Validation part
Aim
International Multicenter Validation Study
Within the Liver Metastasis Research Network
>10 Institutions
8 countries
> 30 participants (Pathologists, Clinicians, Researchers)
Aim (con’t)
The traditional approach
• Select physical slides
– Pass them from one site to the next
• Problems with this approach
– Order of passing slides along
• Who goes first, who goes last?
– Expensive shipping costs
• Also: slow, built-in lag
– Difficulty to annotate
• Disconnect between material and instructions
– Audit trailing
• Have people actually *looked* at the slides?
Digital pathology as an alternative
CHALLENGES SOLUTION(S)
International
Logistic
(Geographic – Time)
Webbased Platform for
Digital Pathology
Multi-Center
Pathological Sections
(Teaching and validation set)
Only one HE section of
interesting cases
Teaching set
Giving
Instructions/explanation
Validation set Data gathering
Portal website
Timeline
Original proposed timeline
• 26/3/2014: Initiation project
with Pathomation©.
• 5/2014: Platform adaptations
finished/platform ready for
LMRN project.
• 7/2014: Open teaching set for
participants.
• 8/2014: Open validation set
for particpants.
Actual timeline*
• 1/2014: First contact
Pathomation©.
• 26/3/2014: Initiation project
with Pathomation©.
• 5/2014: Platform adaptations
finished/platform ready for
LMRN project.
• 14/9/2014 : Open teaching set
for participants.
• 1/11/2014: Open validation
set for participants.
* All ‘delay’ due to organizational reasons, not related to digital platform
Problems encountered
Technical
• Some smaller bugs during
development
Organizational
• Digitalization of histological
slides (scanner availability)
• Centralization of digital images
(transfer of large files from
one server to another)
• Selection of slides/images to
be included in different sets
• ‘Last minute’ inclusion of cases
• Participants struggle to meet
‘deadlines’
The solution: Pathomation platform
PathoCore tile server (IMS)
OpenSlide
MRXS SVS NDPI BIF
ZVI, SCN,
, VSI,
TIFF...
PathoCore tile server (IMS)
JavaScript / JSON
SymPatho
web-
based
viewer
PathoVue
desktop
viewer
SOAP / REST
Software
plugins
PHP Python Perl
Custom digital pathology
project
The solution architecture
Tile server (IMS) available over the
Web with administrator interface
Type 1
slides
Type 2
slides
Type 3
slides
Monitored
folders
Viewer for annotationCustom website
Workflow (why three sites?)
• Step 1: Organize virtual slides
Type 1 / type 2 / type 3
(different file formats, too)
Workflow (why three sites?)
• Step 2: Annotate slides
Workflow (why three sites?)
• Step 3: Define users, send out notifications
Workflow (why three sites?)
• Step 4: setting up the front-end portal
Repeat for other scenarios (type 2 / 3)
Annotate
slides
Present to
participant
Organize
files (IMS)
How much effort did it take?
• 68 hours spent total on software installation,
setup, and website customization
Conclusions
• DP is a good way to organize ring-studies
• Some problems are technical
– First vendor was unable to meet requirements
• Most problems are organizational
– Not specific or related to digital pathology
Putting things in perspective
Translational Cancer Research Unit
POST-DOCTORAL RESEARCHERS
Dr. Luc Dirix, M.D., Ph.D.
Dr. Peter Vermeulen, M.D., Ph.D.
Prof. dr. Steven Van Laere, MSc., Ph.D.
Dr. Gert Van den Eynden, M.D., Ph.D.
Dr. Peter van Dam, M.D., Ph.D.
Prof. Dr. Karin Haustermans, M.D., Ph.D.
Dr. Cecile Colpaert, M.D., Ph.D.
Dr. Roberto Salgado, M.D., Ph.D.
dr. Pharm. Ina Benoy, Ph.D.
PhD STUDENTS
Dr. Dieter Peeters, M.D.
drs. Leen Sas, MSc.
drs. Melike Marsan, MSc.
drs. Eleni Van Schooneveld, MSc.
drs. Bram De Laere, MSc.
Dr. Eugenia Pastushenko, M.D.
ADMINISTRATIVE COORDINATOR
Hilde Maes
MLT’s
Christel Verbruggen, Lt.
Katrien Coen, MSc.
Liver Metastasis Research Network
Prof. dr. P. Brodt
Prof. Dr. A. Majeed
Prof. Dr. N. Bird
Prof. Dr. G. Hoyer-Hansen
Dr. M. Illemann
Dr. R. Eefsen
Prof. Dr. A. Reynolds

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Using a novel whole slide imaging software platform for an international multi-center validation study to assess the histological growth pattern of liver metastases

  • 1. Using a novel whole slide imaging software platform for an international multi-center validation study to assess the histological growth pattern of liver metastases Yves Sucaet, Wim Waelput, Peter Vermeulen and Gert Van den Eynden Also on behalf of the Liver Metastasis Research Network (www.lmrn.org)
  • 2. Introduction • ‘Growth pattern’ of primary tumours and their metastases is heterogeneous • Growth pattern – = the histological result/image of the way malignant tumours interact with the pre-existing normal tissue in their host organ – Integrative histological parameter, which is the result of all involved interactions – Easy to assess by a pathologist using a (simple) HE staining and a microscope
  • 3. G. Van den Eynden et al., Cancer Research 2013
  • 4. Clinically Relevant ? Eefsenetal.JOncol.2012;Epub2012Aug2. Van den Eynden G., Bird N et al. Clin Exp Metastasis 2012 Unpublished
  • 5. To organize an international multi-center validation study on the assessment of the histological growth pattern of liver metastases of solid tumours 1. Teaching part 2. Validation part Aim
  • 6. International Multicenter Validation Study Within the Liver Metastasis Research Network >10 Institutions 8 countries > 30 participants (Pathologists, Clinicians, Researchers) Aim (con’t)
  • 7. The traditional approach • Select physical slides – Pass them from one site to the next • Problems with this approach – Order of passing slides along • Who goes first, who goes last? – Expensive shipping costs • Also: slow, built-in lag – Difficulty to annotate • Disconnect between material and instructions – Audit trailing • Have people actually *looked* at the slides?
  • 8. Digital pathology as an alternative CHALLENGES SOLUTION(S) International Logistic (Geographic – Time) Webbased Platform for Digital Pathology Multi-Center Pathological Sections (Teaching and validation set) Only one HE section of interesting cases Teaching set Giving Instructions/explanation Validation set Data gathering
  • 10. Timeline Original proposed timeline • 26/3/2014: Initiation project with Pathomation©. • 5/2014: Platform adaptations finished/platform ready for LMRN project. • 7/2014: Open teaching set for participants. • 8/2014: Open validation set for particpants. Actual timeline* • 1/2014: First contact Pathomation©. • 26/3/2014: Initiation project with Pathomation©. • 5/2014: Platform adaptations finished/platform ready for LMRN project. • 14/9/2014 : Open teaching set for participants. • 1/11/2014: Open validation set for participants. * All ‘delay’ due to organizational reasons, not related to digital platform
  • 11. Problems encountered Technical • Some smaller bugs during development Organizational • Digitalization of histological slides (scanner availability) • Centralization of digital images (transfer of large files from one server to another) • Selection of slides/images to be included in different sets • ‘Last minute’ inclusion of cases • Participants struggle to meet ‘deadlines’
  • 12. The solution: Pathomation platform PathoCore tile server (IMS) OpenSlide MRXS SVS NDPI BIF ZVI, SCN, , VSI, TIFF... PathoCore tile server (IMS) JavaScript / JSON SymPatho web- based viewer PathoVue desktop viewer SOAP / REST Software plugins PHP Python Perl Custom digital pathology project
  • 13. The solution architecture Tile server (IMS) available over the Web with administrator interface Type 1 slides Type 2 slides Type 3 slides Monitored folders Viewer for annotationCustom website
  • 14. Workflow (why three sites?) • Step 1: Organize virtual slides Type 1 / type 2 / type 3 (different file formats, too)
  • 15. Workflow (why three sites?) • Step 2: Annotate slides
  • 16. Workflow (why three sites?) • Step 3: Define users, send out notifications
  • 17. Workflow (why three sites?) • Step 4: setting up the front-end portal
  • 18. Repeat for other scenarios (type 2 / 3) Annotate slides Present to participant Organize files (IMS)
  • 19. How much effort did it take? • 68 hours spent total on software installation, setup, and website customization
  • 20. Conclusions • DP is a good way to organize ring-studies • Some problems are technical – First vendor was unable to meet requirements • Most problems are organizational – Not specific or related to digital pathology
  • 21. Putting things in perspective
  • 22. Translational Cancer Research Unit POST-DOCTORAL RESEARCHERS Dr. Luc Dirix, M.D., Ph.D. Dr. Peter Vermeulen, M.D., Ph.D. Prof. dr. Steven Van Laere, MSc., Ph.D. Dr. Gert Van den Eynden, M.D., Ph.D. Dr. Peter van Dam, M.D., Ph.D. Prof. Dr. Karin Haustermans, M.D., Ph.D. Dr. Cecile Colpaert, M.D., Ph.D. Dr. Roberto Salgado, M.D., Ph.D. dr. Pharm. Ina Benoy, Ph.D. PhD STUDENTS Dr. Dieter Peeters, M.D. drs. Leen Sas, MSc. drs. Melike Marsan, MSc. drs. Eleni Van Schooneveld, MSc. drs. Bram De Laere, MSc. Dr. Eugenia Pastushenko, M.D. ADMINISTRATIVE COORDINATOR Hilde Maes MLT’s Christel Verbruggen, Lt. Katrien Coen, MSc. Liver Metastasis Research Network Prof. dr. P. Brodt Prof. Dr. A. Majeed Prof. Dr. N. Bird Prof. Dr. G. Hoyer-Hansen Dr. M. Illemann Dr. R. Eefsen Prof. Dr. A. Reynolds