This presentation is fetures the basic introduction to Genome mosaicism in humans and nature, with some examples of its harmful effects on humans, with

1. Surender Rawat
M. Sc. Microbial Biotechnology
Mahrishi Dayanand University
Rohtak, Haryana

3. • GENOME - The genome is the genetic material of an
organism.
• MOSAICISM - Mosaicism is a condition in which
cells within the same person have a different
genetic makeup.
• The phenomenon was discovered by Curt Stern.
• In 1936, he demonstrated that recombination, normal in meiosis, can
also take place in mitosis.
• When it does, it results in somatic (body) mosaics. These are organisms
which contain two or more genetically distinct types of tissue.

5. • Named after the intricate images created by the craftsman from small pieces of
coloured tiles.
• The coexistence of two or more genetically distinct cell populations derived origina
lly from a single zygote.
• Mosaics may arise at any stage of development, from the two-
cell stage onward, or in any tissue which actively proliferates thereafter.
• The phenomenon is commonly observed in many species of animals and
plants and may be caused by somatic mutation or chromosomal nondisjunction.
• An individual animal or plant may exhibit mosaicism, or it may occur in a culture
of a single cell- or tissue-type obtained from an individual.

6.  When eye colours vary between the two eyes, or within one or both eyes, the
condition is called heterochromia iridis (= 'different coloured iris').
 Changes may take place in the dividing cells leading up to iris formation in
the embryo.

7. • These females are heterozygous
for the X-linked colour genes: the genes
for their coat colours are carried on the
X chromosome.
• X-inactivation causes groups of cells
to carry either one or the other X-
chromosome in an active state.

8. FEMALE MALE MOSAIC GYNANDROMORPH
• A gynandromorph is an organism that contains both male and female characteristics.
• While the organism is only a few cells large, one of the dividing cells does not split its
sex chromosomes typically.
• This leads to one of the two cells having sex chromosomes that cause male
development and the other cell having chromosomes that cause female development.

9. • Use of aCGH and SNP chips has allowed detection of events that were missed by karyotyping
• Scientists analyzed the genomes of a bunch of iPSC lines and then compared them to the
“parental” fibroblast cells from which they had been made
 CNV arose specifically during the iPSC production process
 CNVs varied from one cell to another even though all the cells came from a single
person.
• Mosaicism for small for small intragenic CNV was detected in 10% of 30 molecularly
diagonised
• Subjects and extensive genomic CNVs have been found in clonal isolates of embryonic
stem cell.
• In addition, varying levels of mosaicism have reported in somatic human tissues
including the skin, Brain, blood and induced pluripotent stem cells

12. • Mosaicism may result from:
– Unusual events in cell division (mitosis).
– A gene mutation during development
• De novo pre zygotic mutation
• De novo post zygotic mutation
– A chromosomal mutation during development
– X-inactivation: one X chromosome is randomly switched off in cells of
a female mammal
– Numerical or structural abnormalities of chromosomes
• Deletion
• Aneuploidy

13. • Chimerism — the presence of two or more cell lines that are derived
from different zygotes in an organism .
• A 52-year-old woman from Boston was told that she was not the
biological mother of her children, after years of raising them.
• The woman who claimed to have given birth to her children had a set
of genes completely different from those of two of her three children.
but the DNA of the children matched their father’s DNA.
• After working for nearly two years on the case, doctors came up with
an answer to the problem: the woman was a “human chimera.”

14. MOSAICS
• Cells in the organism have
same genetic origins
• Nearly all loci are identical in
the different cell populations
as all cells are derived from
the same zygotic genotype
• Somatic mutations make us all
mosaic
CHIMERA
• A single organism composed of
genetically distinct cells.
• In chimerism there are divergent
genotypes all across the
genome.
• Chimeras can be artificially
produced: organ transplants,
chimera of diffferent animals

15. • Cancer
• Heterochromia iridis
• Lines of Blaschko
• Neurofibromatosis type 1
• Proteus syndrome
• Osteogenesis imperfecta type II

16. • The non-germ cells of the body are heterogeneous: some have a
mutation and some do not.
• The person may or may not be affected by the disorder caused by
that mutation.
• Individuals will express the phenotype depending on how many and
which cells are affected.
• Typically, individuals with somatic mosaicism exhibit a milder
phenotype since only a proportion of cells contain the mutation
and/or because the mutation is confined to a finite segment of the
body.
• Clinical Information on Diseases:
– Cancer
– Down Syndrome
- Lines of Blaschko

17. • A classic example of somatic mosaicism.
• Cancer arises when cells grow uncontrollably, which can be caused by mutations in
genes that prevent the cell from properly functioning within the cell cycle or
prevent it from cell death at the proper time.
• Most cancers occur sporadically, meaning they are not due to an inherited
predisposition.
• Some inherited cancer syndromes include breast and ovarian cancer (BRCA1/2
genes), colon cancer, retinoblastoma, and thyroid cancer.
• Since these mutations are only present in the cancer cells and not the rest of the
cells in the body, the individual has somatic mosaicism for these mutations.

18. • Blaschko lines or the lines of Blaschko are thought to represent pathways of
epidermal cell migration and proliferation during the development of the fetus.
• These lines are invisible but many inherited and acquired diseases of skin
manifest themselves according to these patterns creating the visual appearance
of these lines.

19. • The diploid germ cell precursors in the gonad are heterogeneous: some have a
mutation and some do not.
• A mosaic germline mutation is significant because it can be passed to
offspring.
• Germline mosaicism can be observed with any inheritance pattern, but it is
most commonly seen with autosomal dominant and X-linked disorders.
• Most individuals are unaware they possess a germline mutation until they have
children that are affected.
• Clinical Information on Diseases:
– Osteogenesis imperfecta
– Ovarian dysgenesis

21. • Sometimes known as brittle bone disease
• Bone disorder characterized by brittle bones that are prone to fracture.
• People with OI are born with defective connective tissue, or without the
ability to make it, usually because of a deficiency of Type-I collagen.
• Eight types of OI can be distinguished. Most cases are caused by
mutations in the COL1A1 and COL1A2 genes.
• Severe and usually lethal in the perinatal period
• Most cases die within the first year of life due to respiratory
failure or intracerebral hemorrhage

22. • A combination of germline and somatic mosaicism
• Example is Neurofibromatosis type 2 (NF2) is an autosomal
dominant cancer syndrome
• Symptoms are dizziness; headache; facial weakness, numbness,
or pain; ringing in the ears and progressive hearing loss.
• This disease is caused by inactivating mutations in the NF2
tumour-suppressor gene, located in 22q12, that normally gives
rise to a product called Merlin.
• This peptide is thought to have a tumor-suppressive function
• Merlin's deficiency can result in unmediated progression
through the cell cycle due to the lack of contact-mediated
tumour suppression, sufficient to result in the tumors
characteristic of NF II.

23. • Recently, a range of disorders has been shown to be caused by
mosaicism for point mutations, primarily using NGS technologies
• Non-overgrowth mosaic disorders like Benign keratinocytic epidermal
nevi, which have been shown to be caused by mutations in fibroblast
growth factor receptor 3 (FGFR3), phosphatidylinositol-4, -
5-bisphosphate 3-kinase and different RAS family members.
• A series of mosaic overgrowth disorders was molecularly delineated,
beginning with Proteus syndrome, which was shown to be due to AKT1
mutations

24. • Causes skin overgrowth and a typical bone development, often
accompanied by tumours over half the body.
• Proteus syndrome results from a mutation in the AKT1 gene.
• The AKT1 gene helps regulate cell growth and division (proliferation) and
cell death.
• A mutation in this gene disrupts a cell's ability to regulate its own
growth, allowing it to grow and divide abnormally.
• Increased cell proliferation in various tissues and organs leads to the
abnormal growth characteristic of Proteus syndrome.
• Studies suggest that an AKT1 gene mutation is more common in groups
of cells that experience overgrowth than in the parts of the body that
grow normally

26. •Chromosome nondisjunction
is probably the principal cause
of chromosomal aberration,
which in turn may lead to the d
evelopment of mosaicism.
•Chromosomal alterations
(such as whole-chromosome
aneuploidy, segmental
aneuploidy (that is, aneuploidy
of parts of chromosomes) and
structural alterations) have
been historically identified by
cytogenetic analyses

27. • Mosaicism can result when that genetic lesion is completely or partially reverted,
perhaps driven by selective pressure, in a subset of cells in the multicellular organism.
• For example, the phenomenon of revertant mosaicism has recently been described, in
which a mutation was spontaneously directly corrected in a subset of cells in an affected
organ.
• This phenomenon has been demonstrated in blood, muscle, liver and skin, of which skin
is most dramatic, as the normal patches can be directly visualized among the abnormal
patches.

28. • Recent technological advances have provided us with tools to
assess mosaicism on a much broader scale, in many disorders
and in diverse tissues, with increasing resolution to detect
smaller-scale mutations
• Different approaches used to study mosaicism include
– Cytogenetics
– Microarray
– DNA sequencing

29. • Cytogenetic analysis by study of banded metaphase chromosomes
or by fluorescence in situ hybridization (FISH) is carried out in a
cell-by-cell manner, and recognition of mosaicism is therefore fairly
straightforward.
• Mosaicism is recognized when cells within an individual are found
to have divergent chromosome contents, such as monosomic or
trisomic chromosomes in the karyotype of one cell and a normal
karyotype in another.
• The cytogenetic detection of low-level mosaicism is challenging, as
a sufficient number of cells must be counted

30. • Beginning in 2005, microarray-based techniques began to replace cytogenetic
testing, with the introduction first of array-based comparative genomic
hybridization (aCGH), which can analyse genomic copy number variants (CNVs).
• It is followed by genome-wide SNP arrays, which can analyse both SNPs and
CNVs.
• The advantages of array-based testing (which typically analyses DNA extracted
from whole blood) for mosaicism detection include:
– many cells are analysed simultaneously;
– different cell types are analysed;
– cells of all cell cycle phases are analysed;
– samples do not require culturing, which might itself cause mutations
• SNP arrays are much more sensitive than aCGH for mosaicism detection.

31. DNA sequencing
• Sanger-based sequencing can be extremely effective for many applications, but
it is a low throughput technique.
• NGS is a high-throughput technique that is massively used nowadays.
• These digital data are more amenable to statistical approaches to distinguish
mosaicism from sequencing errors.
• It also does not require genetic mapping data to identify causative genetic
variants.
• For this reason, subtractive informatic approaches — in which two samples are
informatically processed to identify only those positions in the genome that
differ — can be coupled to NGS to identify mosaic alterations.

32. • The recognition of mosaic disorders is rapidly increasing.
• It can affect somatic tissues, the germ line or both.
• It can arise at various stages of development or adult life and can be
caused by mutation from a normal genotype to a variant genotype or from
a variant genotype to a normal genotype.
• Recent advances in genomic technologies have enhanced our ability to
study the widespread nature of mosaicism in both healthy individuals and
in patients with a wide range of disorders.
• Recent insights include:
– Identification of disease genes for disorders that are seen only as
mosaics as they are lethal when constitutional
– the identification of chimerism by whole-genome tools
– recognition of the changing rates of mosaicism with increasing age
represents a window on the ageing process.

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