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Drug Interaction Investigations: Impact of
Recent Guidance for Industry on Early ADME
Testing in vitro

Adrian Fretland, Ph.D.
Lilly Research Laboratories
Eli Lilly and Company


SLAS ADMET SPECIAL INTEREST GROUP
Moderator:
David M. Stresser, Ph.D.
Corning® GentestSM Contract Research Services


         Life Sciences                          1
SIGs at SLAS


     "It's through SIGs that like-minded SLAS members
     connect, share knowledge and experience, and
     explore new frontiers."

     — Michelle Palmer, Ph.D., The Broad
     Institute, Cambridge, Massachusetts.




          Life Sciences                                 2
Screening for Drug-Drug Interactions
- Assays, strategies, and impact of regulatory guidance


Adrian J. Fretland, Ph.D.
Take home messages

•   More in depth guidance for all areas of drug interactions

•   Assays in place in most of industry and contract
    research service groups are more than adequate to
    cover the requirements of the guidance

•   Further emphasizes the need for a detailed
    understanding of a drugs disposition in defining the risk
    of a clinical drug interaction

•   Likely much more M&S because prediction of PK is
    more important (impact on screening!)
Introduction

What Do the Regulatory Agencies Say?

What Does It Mean For Us?

Putting It All Together

Conclusions
Drug-drug interaction background

• Adverse drug reactions (ADR) cause 100K deaths (~6% of the
  hospitalized patients) per year in the U.S.

• DDIs are one of the sources of ADR (~25%)

• Most common DDIs are associated with changes in the activity of
  P450s

• 40% of all PK-based DDIs are due to P450 inhibition

• Nearly 75% of all drugs undergo P450 oxidation, 50% of which is due
  to CYP3A4

• Risk assessment as early as possible helps identify risks and risk
  mitigation strategies for the drug development process
Classic example of P450 inhibition-based DDI
  - the “perfect storm”

• Terfenadine:
  •   Potent inhibitor of hERG channel
  •   CYP3A4 inhibitors raise terfenadine
      levels and cause QTc prolongation                                           Blocked by
                                                                                CYP3A4 inhibitors
  •   Introduced as Seldane (Marion                                                Mibefradil
                                                                                 Ketoconazole
      Merrell Dow) in 1985, withdrawn in
      1997




          Honig et al., Clin. Pharmacol. Ther., (1992)   B. P. Monahan et al., J. Amer. Med. Assoc., 1990
Potential drug interactions involving P450s are
    common
•    A large number of commonly used        Partial list of clinically relevant P450 substrates
     drugs are cleared primarily via the
     P450 metabolic system

•    Inhibition or induction of this
     clearance pathway often has
     serious consequences related to
     toxicity or efficacy of
     coadministered drugs
     •    Trazadone and CYP2D6
          inhibitors – psychomotor
          dysfunction

     •    HMG CoA reductase inhbitors
          and CYP3A inhibitors – myopathy

     •    Fentanyl and CYP3A inhibitors –
          fatal respiratory depression

•    Identifying potential issues pre-
     clinically is an important function
     of ADME scientists                           http://medicine.iupui.edu/clinpharm/DDIs/table.aspx
“Modern day” metabolism based DDIs
        - boosting PK in life threatening diseases

•   Use of HIV protease inhibitor ritonavir
    has become standard as a boosting       Interaction of saquinavir and ritonavir
    agent for co-administered HIV protease
    inhibitors/HIV treatment regimens

•   Can it/should it be used for other
    diseases?
    •   HCV infection – transporter interactions?
    •   Oncology

•   In this respect, the prediction of
    interaction magnitude is different in that
    it is a prediction for efficacy

    •     Predictions often times more
          difficult, interacting drugs are not as
          clean as probe substrates, e.g.
          midazolam                                 Kempf et al., Ant. Agents Chemo., 1997
What can we do pre-clinically?
•       Screen, screen, and screen some more

        Lead                Lead            Clinical Lead    EIH-Enabling/
    Identification       Optimization        Selection        EIH/Beyond

        Assessment of      Development of    Assessment of     Translational
          Liabilities           SAR              Risk           Strategies




•       But, screening is not the only answer
    •      Data in the absence of context is meaningless

•       Important to have clear, coherent, and consistent
        screening strategy

•       But, also a risk assessment strategy
What is DDI risk assessment?
•   Can range from simple static to more complex
    mechanistic models

•   In its most simplistic form, it relates an expected
    plasma concentration to an inhibition parameter
    and an expected outcome

•   In more complex static forms, it predicts an
    outcome in a PK parameter, e.g. change in AUC
    ratio
                                                                                          0.04




                                                          Systemic Concentration (mg/L)
•   In the most complex dynamic and physiologically-                                      0.04
                                                                                          0.03

    based pharmacokinetic (PBPK) models it predicts                                       0.03
                                                                                          0.02

    PK profiles of inhibitor/substrate interactions                                       0.02
                                                                                          0.01
                                                                                          0.01
                                                                                          0.00

•   With the increase in complexity, more and more                                               0   24   48   72   96 120 144 168 192
                                                                                                                Time (h)

    robust data is required along with a greater
    understanding of a drugs disposition/PK
Introduction

What Do the Regulatory Agencies Say?

What Does It Mean For Us?

Putting It All Together

Conclusions
Where were we?
  - State of the art c. 2006




                               •       Only gives guidance on
                                       competitive inhibition
                               •       [I] is total mean steady
                                       state Cmax value
                                   •     Conservative?
                               •       Mention of mechanistic
                                       models, but no guidance
What do we have now…
What are the most substantive changes?
        - From my perspective

•       Many detailed decision trees to assess drug interactions
    •     Multiple levels for consideration with increasing complexity

•       “Detailed” guidance on transporters and UGTs

•       Guidance for the interaction of monoclonal antibodies
        with drug metabolizing enzymes

•       Discussion of using physiologically based
        pharmacokinetic modeling (PBPK) risk assessment

•       Large changes in the guidance on assessing P450
        induction

•       Very restrictive cut offs for what triggers a potential in
        vivo DDI study
Tiered approach
Introduction

What Do the Regulatory Agencies Say?

What Does It Mean For Us?

Putting It All Together

Conclusions
P450 Inhibition
Breaking it down
    - Tier I

• Simplistic model predicting changes in AUC


• Essentially, same equation as in previous guidance
• The cut off for R is either 1.1 or 11 (dependent on
  involvement of CYP3A)
• Key parameter is [I]
   • For CYP3A inhibitors, calculated gut concentration, molar
     dose/250 mL
   • For other inhibitors, calculated as total maximal systemic
     concentration
   • Known to be overly conservative and over estimating of DDI risk
More about Tier I

• Use of total systemic concentration is thought to be
  overly conservative
  •   Fails to account for potentially higher liver levels
  •   May be aggressive?

• Often stated, that this equation will only help with
  compounds suspected to be non-inhibitors (IC50 > 50 µM)
  •   Is this a true statement?
  •   Depends on therapeutic area…

• Internal decision processes will most likely drive the
  application of Tier I in DDI risk assessment
Tier I CYP inhibition assessment
        - Not all therapeutic areas are created alike

•       For some therapeutic areas, doses are quite high, e.g.
        virology and oncology
•       Does Tier 1 apply?
•       A recent example:
    •     Vemurafenib – recently approved for the treatment of late-stage
          melanoma
    •     Dose is 2,400 mg bid – translates to a total Cmax value of ~ 62 µg/mL =
          ~150 µM!!
    •     Measuring a Ki value this high is near impossible in today’s chemical
          space
    •     Contrast atorvastatin, Cmax value of ~ .045 µg/mL = ~0.1 µM!!

•       Be careful with ignoring Tier 1 in the decision tree, it
        does not always guarantee a “non-inhibitor” (IC50 >
        50µM) does not need additional scrutiny
The “net effect” model



               • The “net effect” model has been shown to be
                 the most predictive static DDI model in
                 literature to date

               • But the key parameter is [I]
                   • How should it be calculated?
                   • Cmax,sys, Cmax,inlet?
                   • There is guidance with regards to calculations,
                      but there assumptions on these calculations
                        • Can lead to overly conservative or
                           optimistic assessments…

               • But, what is added for the consideration of
                 P450 inhibition?
The “net effect” model and P450 inhibition



                 • Again, essentially the same parameter as
                   used in all P450 inhibition risk
                   assessments
                     • Incorporates, fraction metabolized (fm) of
                       victim drug
                     • Consideration of gut inhibition (important
                       for CYP3A predictions)
                     • Takes into account protein binding

                 • But the key parameter is still [I]
                 • From an assay perspective, little if any
                   impact on P450 inhibition screening!
How do we screen for competitive CYP inhibitors?
     - Important considerations

 •        What matrix can be used?
      •     Recombinant P450s
      •     Microsomes
      •     Hepatocytes

 •        What substrates can be used?
      •     Fluorescent
      •     Radioactive
      •     Drug-like substrates

 •        Screening strategies
      •     Concentrations, IC50 vs. Ki, etc.
      •     “Screen Smart”
What is the proper matrix?

•       Depends on project stage/ screening strategy

•       For screening, two common choices
    •     Recombinant P450s
    •     Microsomes

•       Choice of matrix is also linked choice of substrate
    •     Because of lack of selectivity, fluorescent substrates are only
          appropriate for use in inhibition assays using recombinant P450s
    •     Recombinant P450s very popular until recently

•       Where is the field now?
Recombinant P450s in P450 inhibition screening
           – Correlation of HLM and recombinant IC50 values
             Good correlation Moderate correlation     No correlation




                                                            From: Fowler & Zhang, AAPS J , 2008


•        For many projects there is a poor correlation between
         systems
     •     Requires rescreening in HLM – resource intensive
     •     Possibly due to inappropriate accessory protein expression
•        Is there a better way?
Rapid analytical methods for P450 inhibition screening
  - Rapid Fire analytics

  •       Fluorescence-based screening
          became popular because speed
          and convenience
      •      Minutes to analyze plate versus
             hours for LC/MS
      •      Translates to hours for
             fluorescence and days for LC/MS
             in regular screening campaigns

  •       Advent of Rapid Fire LC
          technology substantially
          decreases analysis time
                      n=100

      •      Approximately 15 hours for 200
             compounds, 3 isoforms, 8
             concentrations

             IC50 values between analytical systems correlate well
                       n=200
What would a CYP inhibition screening strategy look like?
     - Screen Smart

             Lead               Lead              Clinical Lead       EIH-Enabling/
         Identification      Optimization          Selection           EIH/Beyond

           Assessment of       Development of      Assessment of        Translational
             Liabilities            SAR                Risk              Strategies




         Fluorescent screening – IC50
                                          HLM screening – IC50
                                                                   Regulatory assays
 •       Tiered approach with increasing data robustness
     •       IC50 to Ki to mechanism of inhibition
     •       Determination of mechanism and Ki are very time and resource intensive

 •       Does Rapid Fire screening change the approach?
Streamlining P450 inhibition with rapid analytics
  - Screen Smart

        Lead             Lead            Clinical Lead       EIH-Enabling/
    Identification    Optimization        Selection           EIH/Beyond

      Assessment of     Development of    Assessment of        Translational
        Liabilities          SAR              Risk              Strategies




    Fluorescent screening – IC50
         HLM Rapid Fire screening – IC50
                                HLM screening – IC50
                                                          Regulatory assays

 Fast analytics can decrease the amount of resources
                 needed for screening
Other considerations
•       What P450 isoforms should be assayed?
    •     At a minimum CYP2C9, CYP2D6, and CYP3A4 in initial screening
    •     If resources allow, CYP1A2, CYP2B6, CYP2C8, and CYP2C19
    •     All are required for regulatory submissions
    •     Also dependent on therapeutic areas of interest

•       For regulatory purposes, a second substrate is required
        for CYP3A4
    •     Multiple binding sites
    •     It practical terms, few profound differences between substrates

•       What about other matrices, specifically hepatocytes
    •     Some utility shown in literature examples, protein binding
          effects, permeability, etc.
    •     May provide useful in complex DDIs, i.e. transporter effects, competing
          metabolic pathways, etc.
Summary
         - Competitive inhibition


•       The FDA guidance regarding CYP inhibition has
        been updated to a more mechanistic approach

•       Key to addressing whether a potential new drug
        possess a rick of clinical DDI is robust input data
    •     Inhibition kinetics
    •     Input data for prediction of inhibitor concentration

•       Current industry standard assays for assessing
        inhibition kinetics are more than adequate
    •     Continued increases in throughput and decreases in
          turnaround time are helpful
P450 Time Dependent Inhibition
Time dependent P450 inhibition results in clinically
relevant DDIs

•       DDIs resulting from TDI can be more ominous and
        potentially harmful
    •     Destruction of enzyme – lower enzymatic levels until synthesis
          restores normal levels
    •     Potential toxicities resulting from TDI can be prolonged
                                                                                         Interaction of diltiazem with midazolam
                                          0.04                                                                                                                                   0.20
                                                                                                                                                                                             AUCi/AUC
          Systemic Concentration (mg/L)




                                                                                                                                                Systemic Concentration (mg/L)
                                                                                         0.03            Day 1           Day 6 - no inhibitor                                   Day 6 with inhibitor
                                                          Plasma concentration (ng/mL)




                                          0.04                                                                                                                                   0.18
                                                                                                                                                                                 0.16
                                          0.03                                           0.03                                                                                    0.14


                                                                                                                                                 Day 1 – 1.3
                                          0.03                                                                                                                                   0.12
                                                                                         0.02
                                          0.02                                                                                                                                   0.10

                                          0.02                                           0.02                                                                                    0.08
                                                                                                                                                                                 0.06
                                          0.01                                           0.01                                                                                    0.04
                                          0.01

                                          0.00
                                                                                         0.01                                                    Day 6 – 3.4                     0.02
                                                                                                                                                                                 0.00
                                                 0   24                                   0.00 72
                                                                                         48         96       120   144   168   192                                                      0   24   48    72      96      120   144   168   192

                                                                                                0 Time (h)          6                12                                         18                24        Time (h)


                                                                                          MDZ         MDZ+ DIL
                                                                                                                                 Time (hr)       Day 8 – 2.0                                                 DIL
Breaking it down
    - Tier I

• Really very little guidance related to risk in 2006 guidance
• New guidance uses a simplistic model to predict changes in
  AUC




• Same cut offs as for competitive inhibition ( 1.1 or 11)
• Again, the key parameter is [I]
   • For CYP3A inhibitors, calculated for gut concentration, molar
     dose/250 mL
   • For other inhibitors, calculated as total maximal systemic
     concentration
   • Known to over predict the magnitude of DDI
The “net effect” model and P450 TDI
  - Tier II




                 • Identical to competitive inhibition in the
                   additional factors considered
                     • Incorporates, fraction metabolized (fm) of
                       victim drug
                     • Consideration of gut inhibition (important
                       for CYP3A predictions)
                     • Takes into account protein binding

                 • But the key parameter is still [I]
                 • From an assay perspective, little if any
                   impact on P450 inhibition screening!
How do we screen for time dependent CYP inhibitors?
        - Important considerations

•       What matrix should be used?
    •      Recombinant P450s
    •      Microsomes
    •      Hepatocytes

•       What substrates should be used?
    •      Fluorescent – in practice, not commonly utilized
    •      Drug-like substrates

•       Screening strategies
    •      Concentrations, KI, IC50 shift, progress curves, etc.
    •      What isoforms should be screened?
    •      “Screen Smart”
Microsomal-based assays are the most common
assays for primary screening
•       Microsomal-based assays are the most common platform
        used for TDI screening

•       Numerous assay formats exist
    •     IC50 shift assay
          •   Essentially determination of an IC50 with a pre-incubation phase
                                                             100              Increase pre-
                                                                             incubation time

                                        % CONTROL ACTIVITY




                                                              0
                                                                   INHIBITOR CONC.
          •   Advantage – can be combined with competitive inhibition screening, good for
              rank ordering compounds
          •   Disadvantage – difficultly in defining what is a “relevant” shift (risk assessment)
Microsomal-based assays are the most common
assays for primary screening
•                                            Microsomal-based assays are the most common platform
                                             used for TDI screening

•                                            Numerous assay formats exist
                          •                                     Pre-incubation loss of activity assays
                                                                                                                0.08uM

                          100                                   •              Can be single point or multipoint concentration depending on needs
                                                                                                                0.16uM
                                                                                                                0.32uM
                                                                                                                0.6uM
                                                                                                                1.25uM                                    V erapamil
                                                                                                                2.5uM               0.075
                                                                                                                5uM
    %Activity remaining




                                                                                                                10uM
                                                                                                           0.08uM
                                                                                                                20uM
                                                                                                           0.16uM
                                                    100                                                         40uM
                                                                                                           0.32uM
                                                                                                           0.6uM                    0.050
                                                                                                           1.25uM
                                                                                                                                                                                  KI


                                                                                                                         S lo p e
                                                                                                           2.5uM
                                                                                                           5uM
                              %Activity remaining




                                                                                                           10uM
                          10                                                                               20uM
                                                                                                           40uM
                                                                                                                                    0.025                                        kinact
                                                          10        15             20           25    30
                                                                                                                                    0.000
                                                    10              Pre-incubation Time (min)
                                                                                                                                            0   10   20        30      40   50
                                                                                                                                                          uM

                                                                •              Advantage – multi-concentration assay is very informative
                                                               10        15         20         25    30
                                                                         Pre-incubation Time (min)



                                                                •              Disadvantage – time and resource intensive for multipoint assay, single point
                                                                               assays difficult to interpret and define relevance
But what about risk assessment with TDI?
•       With many DDI prediction algorithms for                                                                              A
                                                                                      100

        competitive P450 inhibition, the observed                                               Erythromycin

                                                                                                Diltiazem
                                                                                                               Verapmil



        versus predicted is good (within two-fold)




                                                                .
                                                                Predicted DDI (HLM)
•       However, when assessing risk for DDIs with                                    10

        TDI, there is often a systematic over
        prediction of magnitude of effect
    •      May lead to discarding compounds with no or little
           DDI risk                                                                     1
                                                                                            1                                    10      100
    •      Resource intensive follow up assays                                                                            Observed DDI




•       Would hepatocytes be a better matrix for
        assessing TDI?
    •      More physiologic system
    •      Incorporates more complex systems, e.g. protein
           degradation, etc.
Is there an increase in the accuracy of the DDI
predictions with human hepatocyte data?

                                                                            A



                                                                                                    •
                                     100
                                               Erythromycin

                                               Diltiazem
                                                              Verapmil
                                                                                                            The accuracy of the
                                                                                                            prediction of AUC increase
 .
 Predicted DDI (HLM)




                                     10                                                                     with CYP3A4 TDI is better
                                                                                                            using kinetic parameters
                                                                                                            from human hepatocytes
                                                                                                            when compared to HLM
                                       1
                                           1                                  10              100
                                                                            B
                                                                         Observed DDI

                                     100
                                               Erythromycin     Verapmil



                                                                                                    •
                                               Diltiazem

                                                                                                            Why?
     .
     Predicted DDI (HH add method)




                                                                                                        •     More physiological system
                                      10


                                                                                                        •     Are their additional explanations?

                                       1
                                           1                               10           100
                                                                   Observed DDI
The caveat about predictions of TDI
•       Unlike competitive inhibition predictions, TDI predictions
        are highly dependent on a system parameter, kdeg



•       This parameter cannot be directly measured in vivo, but
        has been estimated through various methods
    •     The kdeg value for human CYP3A4 has a very wide range
    •     Controversial as to what is the true value

•       Could kdeg be “fitted” for more accurate predictions in
        HLM?

•       Real value of hepatocyte systems is to assess DDI in a
        more complex system
What would a P450 TDI inhibition screening strategy look like?

           Lead               Lead               Clinical Lead       EIH-Enabling/
       Identification      Optimization           Selection           EIH/Beyond

         Assessment of       Development of       Assessment of        Translational
           Liabilities            SAR                 Risk              Strategies




      Single concentration or IC50 shift
                                        Kinetics determination
                                                                  Regulatory assays
  •     Tiered approach with increasing data robustness

  •     Kinetic determination for risk assessment and further evaluation

  •     Incorporate human hepatocytes for more complex interactions
Summary
     - Time-dependent inhibition


•   The 2012 FDA guidance for assessing TDI has
    been updated significantly when compared to the
    2006 guidance

•   Despite the update to the guidance, models tend to
    over predict the magnitude of drug interaction with
    CYP3A4

•   More complex cell-based assays may provide an
    improvement in predictive power of mechanistic
    models
P450 Induction
Breaking it down
    - Tier I
• Large changes on how induction is assessed when
  comparing the 2006 and 2012 guidance's
   • “40%” POC in enzyme activity
   • Move towards more pharmacological characterization of
     induction


                  •   d is a calibration term
                  •   In Tier I always set to 1 (most conservative)

• Cut off is an R<1 (induction = reduction in AUC)
• As with competitive and TDI, only total concentration is
  considered
   • Leads to many false positives
The “net effect” model and P450 induction
  - Tier II




                • Similar to competitive and TDI
                    • Incorporates, fraction metabolized (fm) of victim
                      drug
                    • Consideration of gut induction (important for
                      CYP3A predictions)
                    • Takes into account protein binding

                • At this level, d is calibrated against known
                  positive controls for your system (typically <1)

                • Again, the key parameter is still [I]
                • Unlike inhibition, substantial changes to
                  screening paradigms
How do we screen for inducers of P450 metabolism?
        - Important considerations

•       Assay types
    •      Ligand binding assay
    •      Reporter gene (transactivation) assay
    •      Hepatocytes

•       Read outs
Mechanism of receptor-mediated induction
 - PXR-mediated CYP3A4 induction




                     SRC-1                                                  CYP3A4
                                                                             mRNA
   RXRPXR                                                Transcription
                      TF’s    RNA pol II

        XREM             Promoter          CYP3A4 gene


      Ligand                                                             Translation



 Ethinyl estradiol      Efavirenz          Warfarin
 Erythromycin           Cyclosporin        Tamoxifen        Drug
                                                                             CYP3A4
 Atorvastatin           Carbamazepine      Doxorubicin
 Indinavir              Midazolam
                                                         Drug-OH
How do we screen for inducers of P450 metabolism?
        - Important considerations

•       Assay types
    •      Ligand binding assay
    •      Reporter gene (transactivation) assay
    •      Hepatocytes

•       Read outs
    •      IC50
    •      Reporter gene activity
    •      mRNA
    •      Enzyme activity

•       Concentrations??
    •      Guidance is for three
    •      Is that enough to derive a robust EC50?
Paradigm shift in induction screening

•       Previous guidance flagged a compound if it showed
        an increase in enzyme activity that was 40% of the
        positive control

•       New guidance is using mRNA

•       And, is more pharmacologically driven



•       What impact will this have?
    •     Depends on screening strategy and philosophy
    •     But, it will likely drive the need for many more hepatocyte
          experiments
Why the change to mRNA?
        - Example of ritonavir

                                                                                                              •Why does ritonavir
                                                                                                                have an activity
                                                                            CYP3A4 Activity                    much lower than
 Fold Change (Over DMSO)




                                                                                                                vehicle control?
            8
            7                                                                                                   •Is this correct?
            6
            5                                                                                                   Does the mRNA
            4
            3                                                                                                      correlate?
            2
            1
            0




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      At first glance, ritonavir, amprenavir, and saquinavir appear to have
                            no CYP induction liabilities.
Fold Change (Over DMSO)
                                                                                     D




                                                                                                0
                                                                                                2
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                                                                                                                        - Example of ritonavir




                                                                         1 Rit
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                                                                                                                                                 Why the change to mRNA?




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                                                                      1 Sa
                                                                         uM qu
                                                                    10 S ina
                                                                         uM aqu vir
                                                                             Sa ina
                                                                               qu vir
                                                                                  in
                                                                                     av
     mRNA data suggest ritonavir, amprenavir, and saquinavir are




                                                                                        ir
55
Other considerations
•       What P450 isoforms should be assayed?
    •     Guidance states that the three most inducible P450 isoforms should be
          tested, CYP3A4, CYP1A2, and CYP2B6
    •     Only CYP3A4 is really understood from a molecular perspective AND a
          clinically relevant perspective…

•       Which assay can be used?
    •     From a regulatory perspective, only hepatocyte data are acceptable
    •     For screening purposes, other assays can be utilized
    •     Reporter gene assays
          •   Ease and convenience
          •   Not always predictive of hepatocyte data
    •     Ligand binding assay
          •   Very high throughput
          •   Relevance to hepatocyte data?
Summary
         - P450 induction


•       One of the largest changes to the updated FDA
        guidance on drug interactions is in the assessment
        of P450 induction
    •     Move from largely empirical assessment to a mechanistic
          assessment
    •     Change from enzyme activity as a marker of induction to mRNA

•       Hepatocytes are the primary screening tool on
        which all risk assessments are based

•       Screening paradigms are being reevaluated and
        updated to address updated guidance
Introduction

What Do the Regulatory Agencies Say?

What Does It Mean For Us?

Putting It All Together

Conclusions
A word about the net effect model




•   As stated previously, the most predictive model for
    clinical DDIs in the literature

•   Importantly, it considers all forms of DDI

•   What is it’s impact on predictions?

•   Back to ritonavir…
Changes in PK in compounds with inhibition and induction
                 - Interaction of ritonavir and midazolam
                                                                                                                                 0.05
             12.00                   Interaction driven by inhibition




                                                                                                 Systemic Concentration (mg/L)
                                                                                                                                 0.04
             10.00
                                                                                                                                 0.04
 AUC Ratio




              8.00
                                                              Interaction a net effect of both                                   0.03
              6.00
                                                                  inhibition and induction                                       0.03
              4.00                                                                                                               0.02
              2.00                                                                                                               0.02
              0.00                                                                                                               0.01
                     0      24       48         72    96        120      144       168                                           0.01

                                            Time (Hours)                                                                         0.00
                                                                                                                                        0   24      48       72       96        120   144   168

                 Median Population Rss values        Induction/Interaction Threshold                                                                     Time - Substrate (h)


                                                                                                                                                 CSys         CSys with Interaction




             •           If only the inhibition potential is considered, the true magnitude of effect is
                         over estimated

             •           But, when both inhibition and induction are incorporated into the
                         assessment, the magnitude of effect is far reduced

             •           In this example, compound would still be considered an inhibitor of CYP3A
                     •      Strong inhibitor of CYP3A4 – Ki = 25 nM
                     •      What if the dose was much lower?
What about a compound that is a weak inducer
and inhibitor?
        Interaction of Compound X with midazolam
                      2.00
                                    Inhibition                                    Induction
          AUC Ratio

                      1.50
                      1.00
                      0.50
                      0.00
                             0            24         48         72           96          120           144
                                                            Time (Hours)

                                 Median Population Rss values        Induction/Interaction Threshold


•   CYP3A4 Ki = 16 µM

•   CYP3A4 EC50 = 7 µM

•   In this case, a compound that may be considered a weak inducer
    may actually have no “net effect” for DDI
A word about the cut offs
•       Where did these come from? Are they reasonable?




•       Related to bioequivalence
    •     Is this correct?
    •     Is there something better?

•       These are regulatory cut offs that will define the need for
        a clinical study

•       Internal decision making may define relevance?
The impact of modeling and simulation

•       What is meant by “static” and “dynamic” models?

•       Static model = Net effect model

•       Dynamic models are essentially M&S programs that
        incorporate the net effect model into a prediction of PK
        from in vitro data
    •     Simcyp
    •     Gastroplus
    •     Others
    •     Can also be carried into PBPK models

•       Provide easy and convenient was to predict [I]
    •     Potential “Black Box” trap
    •     DANGER!!!
What does the EMA guidance look like?

•       More comprehensive in that it discusses interactions
        beyond DDIs (food effect, PD, etc.)

•       For DDIs, all the same equations are utilized as in the
        FDA guidance

•       However, there is no tiered decision tree
    •     May be more practical?

•       Again, it is all about [I]

•       All mechanistic and static models utilize unbound
        concentration with correction using a safety factor
    •     Either 50- or 250-fold depending on degree of protein binding inhibition
What does it really mean?

•       More modeling and simulation!
    •     Depending on therapeutic area, any signal for inhibition by
          P450s will lead to a need for M&S to de-risk
    •     Even simple static and mechanistic models require robust input
          data
    •     More complex models can require more input data

•       A deep understanding of molecules (DDI
        parameters, metabolism, clearance, etc.)
The true story on our friend diltiazem…

• If simulations are conducted with only the inhibition
  parameters of the parent molecule, diltiazem, little to no
  interaction is predicted 0.02




                                                          Plasma concentration (mg/mL)
                                         Day 6 - no inhibitor
                                                                                         0.02                 Day 6 - with inhibitor
  •   pAUC ratio = 1.47
                                                                                         0.01
  •   oAUC ratio = 4.0
                                                                                         0.01

                                                                                         0.00
                                                                                                0       6     12            18            24
                                                                                                            Time - hr




• If however, the primary metabolite, desmethyldiltiazem, is
  included the predicted versus the observed fits much
                          0.03
  better
                          Plasma concentration (mg/mL)




                          0.03                 Day 6 - no…
                                                         0.02                                                                    Day 6 with …
  •   pAUC ratio = 3.41                                  0.02
  •   oAUC ratio = 4.0                                   0.01
                                                         0.01
                                                         0.00
                                                                                          0         6         12              18                24
                                                                                                            Time (hr)
What does it really mean?

•       More modeling and simulation
    •     Depending on therapeutic area, any signal for inhibition by
          P450s will lead to a need for M&S to de-risk
    •     Even simple static and mechanistic models require robust input
          data
    •     More complex models can require even more input data

•       A deep understanding of molecules
    •     Understanding of clearance pathways and metabolites
    •     DDI risk for these metabolites
    •     Increases the complexity for prediction of DDIs

•       More physiological systems for DDI screening, but
        not in true screening mode
Introduction

What Do the Regulatory Agencies Say?

What Does It Mean For Us?

Putting It All Together

Conclusions
Assessing DDIs in vitro in modern drug
  discovery
                            As biology and medicinal chemistry has
                            progressed the challenges for DMPK have
                            increased
                             •   Poor solubility
                             •   Highly selective and potent compounds
                             •   Target pharmacology

                            Identifying these caveats is important to
                            understand the potential limitations in the in
                            vitro data used to assess DDI potential

                            These challenges are not going to go away
                            for the vast majority of programs, and will
                            not get easier for the DMPK scientist

from Luo et al., DMD 2002   PHARMACOLOGISTS HAVE IT EASY!
Take home messages

•       More in depth guidance for all areas of drug interactions

•       Assays in place in most of industry and contract research service
        groups are more than adequate to cover the requirements of the
        guidance
    •      Development of more specialized/complex systems is of help, but not
           for screening – TDI and hepatocytes

•       Further emphasizes the need for a detailed understanding of a
        drugs disposition in defining the risk of a clinical drug interaction
    •      Ritonavir
    •      Diltiazem

•       Likely much more M&S because prediction of PK is more important
        (impact on screening!)
    •      WHAT IS [I]??
Classic example of P450 induction-DDI
 - the classic example rifampin




                                  from Niemi et al., Clin Pharmacokinet 2003.
Determination of CYP3A TDI in human hepatocytes
                     Hepatocyte   HLM
                                                                                               diltiazem
                                                         0.020

                       Mean       Mean
                                                         0.015




                                          Kobs (1/min)
      Diltiazem
                                                         0.010
           KI           8.9       1.53
                                                         0.005
         kinact       0.0228      0.024

       kinact/KI      0.0026      0.016                  0.000
                                                                      0       20          40      60       80    100
     Erythromycin                                                                  Concentration (M)

           KI           67.9      5.33                             0.08
                                                                                    Erythromycin
         kinact        0.079      0.061
                                                                   0.06



                                                    Kobs (1/min)
       kinact / KI    0.0012      0.013
                                                                   0.04
 In general, the inactivation
 kinetic parameters are                                            0.02

 higher in hepatocytes when                                        0.00
                                                                          0         100            200          300
 compared to HLM                                                                   Concentration (M)
Drug interactions are precipitated in multiple
manners

• Compounds as                      • Compounds as
  substrates (victims)                inhibitors/inducers
                                      (perpetrators)

                                    • Not only P450s…
                                      •   UGTs
                                      •   Transporters

                                    • Can also be
                                      pharmacodynamic
   From: Williams et al, DMD 2004

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SLAS ADMET SIG: SLAS2013 Presentation

  • 1. Drug Interaction Investigations: Impact of Recent Guidance for Industry on Early ADME Testing in vitro Adrian Fretland, Ph.D. Lilly Research Laboratories Eli Lilly and Company SLAS ADMET SPECIAL INTEREST GROUP Moderator: David M. Stresser, Ph.D. Corning® GentestSM Contract Research Services Life Sciences 1
  • 2. SIGs at SLAS "It's through SIGs that like-minded SLAS members connect, share knowledge and experience, and explore new frontiers." — Michelle Palmer, Ph.D., The Broad Institute, Cambridge, Massachusetts. Life Sciences 2
  • 3. Screening for Drug-Drug Interactions - Assays, strategies, and impact of regulatory guidance Adrian J. Fretland, Ph.D.
  • 4. Take home messages • More in depth guidance for all areas of drug interactions • Assays in place in most of industry and contract research service groups are more than adequate to cover the requirements of the guidance • Further emphasizes the need for a detailed understanding of a drugs disposition in defining the risk of a clinical drug interaction • Likely much more M&S because prediction of PK is more important (impact on screening!)
  • 5. Introduction What Do the Regulatory Agencies Say? What Does It Mean For Us? Putting It All Together Conclusions
  • 6. Drug-drug interaction background • Adverse drug reactions (ADR) cause 100K deaths (~6% of the hospitalized patients) per year in the U.S. • DDIs are one of the sources of ADR (~25%) • Most common DDIs are associated with changes in the activity of P450s • 40% of all PK-based DDIs are due to P450 inhibition • Nearly 75% of all drugs undergo P450 oxidation, 50% of which is due to CYP3A4 • Risk assessment as early as possible helps identify risks and risk mitigation strategies for the drug development process
  • 7. Classic example of P450 inhibition-based DDI - the “perfect storm” • Terfenadine: • Potent inhibitor of hERG channel • CYP3A4 inhibitors raise terfenadine levels and cause QTc prolongation Blocked by CYP3A4 inhibitors • Introduced as Seldane (Marion Mibefradil Ketoconazole Merrell Dow) in 1985, withdrawn in 1997 Honig et al., Clin. Pharmacol. Ther., (1992) B. P. Monahan et al., J. Amer. Med. Assoc., 1990
  • 8. Potential drug interactions involving P450s are common • A large number of commonly used Partial list of clinically relevant P450 substrates drugs are cleared primarily via the P450 metabolic system • Inhibition or induction of this clearance pathway often has serious consequences related to toxicity or efficacy of coadministered drugs • Trazadone and CYP2D6 inhibitors – psychomotor dysfunction • HMG CoA reductase inhbitors and CYP3A inhibitors – myopathy • Fentanyl and CYP3A inhibitors – fatal respiratory depression • Identifying potential issues pre- clinically is an important function of ADME scientists http://medicine.iupui.edu/clinpharm/DDIs/table.aspx
  • 9. “Modern day” metabolism based DDIs - boosting PK in life threatening diseases • Use of HIV protease inhibitor ritonavir has become standard as a boosting Interaction of saquinavir and ritonavir agent for co-administered HIV protease inhibitors/HIV treatment regimens • Can it/should it be used for other diseases? • HCV infection – transporter interactions? • Oncology • In this respect, the prediction of interaction magnitude is different in that it is a prediction for efficacy • Predictions often times more difficult, interacting drugs are not as clean as probe substrates, e.g. midazolam Kempf et al., Ant. Agents Chemo., 1997
  • 10. What can we do pre-clinically? • Screen, screen, and screen some more Lead Lead Clinical Lead EIH-Enabling/ Identification Optimization Selection EIH/Beyond Assessment of Development of Assessment of Translational Liabilities SAR Risk Strategies • But, screening is not the only answer • Data in the absence of context is meaningless • Important to have clear, coherent, and consistent screening strategy • But, also a risk assessment strategy
  • 11. What is DDI risk assessment? • Can range from simple static to more complex mechanistic models • In its most simplistic form, it relates an expected plasma concentration to an inhibition parameter and an expected outcome • In more complex static forms, it predicts an outcome in a PK parameter, e.g. change in AUC ratio 0.04 Systemic Concentration (mg/L) • In the most complex dynamic and physiologically- 0.04 0.03 based pharmacokinetic (PBPK) models it predicts 0.03 0.02 PK profiles of inhibitor/substrate interactions 0.02 0.01 0.01 0.00 • With the increase in complexity, more and more 0 24 48 72 96 120 144 168 192 Time (h) robust data is required along with a greater understanding of a drugs disposition/PK
  • 12. Introduction What Do the Regulatory Agencies Say? What Does It Mean For Us? Putting It All Together Conclusions
  • 13. Where were we? - State of the art c. 2006 • Only gives guidance on competitive inhibition • [I] is total mean steady state Cmax value • Conservative? • Mention of mechanistic models, but no guidance
  • 14. What do we have now…
  • 15. What are the most substantive changes? - From my perspective • Many detailed decision trees to assess drug interactions • Multiple levels for consideration with increasing complexity • “Detailed” guidance on transporters and UGTs • Guidance for the interaction of monoclonal antibodies with drug metabolizing enzymes • Discussion of using physiologically based pharmacokinetic modeling (PBPK) risk assessment • Large changes in the guidance on assessing P450 induction • Very restrictive cut offs for what triggers a potential in vivo DDI study
  • 17. Introduction What Do the Regulatory Agencies Say? What Does It Mean For Us? Putting It All Together Conclusions
  • 19.
  • 20. Breaking it down - Tier I • Simplistic model predicting changes in AUC • Essentially, same equation as in previous guidance • The cut off for R is either 1.1 or 11 (dependent on involvement of CYP3A) • Key parameter is [I] • For CYP3A inhibitors, calculated gut concentration, molar dose/250 mL • For other inhibitors, calculated as total maximal systemic concentration • Known to be overly conservative and over estimating of DDI risk
  • 21. More about Tier I • Use of total systemic concentration is thought to be overly conservative • Fails to account for potentially higher liver levels • May be aggressive? • Often stated, that this equation will only help with compounds suspected to be non-inhibitors (IC50 > 50 µM) • Is this a true statement? • Depends on therapeutic area… • Internal decision processes will most likely drive the application of Tier I in DDI risk assessment
  • 22. Tier I CYP inhibition assessment - Not all therapeutic areas are created alike • For some therapeutic areas, doses are quite high, e.g. virology and oncology • Does Tier 1 apply? • A recent example: • Vemurafenib – recently approved for the treatment of late-stage melanoma • Dose is 2,400 mg bid – translates to a total Cmax value of ~ 62 µg/mL = ~150 µM!! • Measuring a Ki value this high is near impossible in today’s chemical space • Contrast atorvastatin, Cmax value of ~ .045 µg/mL = ~0.1 µM!! • Be careful with ignoring Tier 1 in the decision tree, it does not always guarantee a “non-inhibitor” (IC50 > 50µM) does not need additional scrutiny
  • 23. The “net effect” model • The “net effect” model has been shown to be the most predictive static DDI model in literature to date • But the key parameter is [I] • How should it be calculated? • Cmax,sys, Cmax,inlet? • There is guidance with regards to calculations, but there assumptions on these calculations • Can lead to overly conservative or optimistic assessments… • But, what is added for the consideration of P450 inhibition?
  • 24. The “net effect” model and P450 inhibition • Again, essentially the same parameter as used in all P450 inhibition risk assessments • Incorporates, fraction metabolized (fm) of victim drug • Consideration of gut inhibition (important for CYP3A predictions) • Takes into account protein binding • But the key parameter is still [I] • From an assay perspective, little if any impact on P450 inhibition screening!
  • 25. How do we screen for competitive CYP inhibitors? - Important considerations • What matrix can be used? • Recombinant P450s • Microsomes • Hepatocytes • What substrates can be used? • Fluorescent • Radioactive • Drug-like substrates • Screening strategies • Concentrations, IC50 vs. Ki, etc. • “Screen Smart”
  • 26. What is the proper matrix? • Depends on project stage/ screening strategy • For screening, two common choices • Recombinant P450s • Microsomes • Choice of matrix is also linked choice of substrate • Because of lack of selectivity, fluorescent substrates are only appropriate for use in inhibition assays using recombinant P450s • Recombinant P450s very popular until recently • Where is the field now?
  • 27. Recombinant P450s in P450 inhibition screening – Correlation of HLM and recombinant IC50 values Good correlation Moderate correlation No correlation From: Fowler & Zhang, AAPS J , 2008 • For many projects there is a poor correlation between systems • Requires rescreening in HLM – resource intensive • Possibly due to inappropriate accessory protein expression • Is there a better way?
  • 28. Rapid analytical methods for P450 inhibition screening - Rapid Fire analytics • Fluorescence-based screening became popular because speed and convenience • Minutes to analyze plate versus hours for LC/MS • Translates to hours for fluorescence and days for LC/MS in regular screening campaigns • Advent of Rapid Fire LC technology substantially decreases analysis time n=100 • Approximately 15 hours for 200 compounds, 3 isoforms, 8 concentrations IC50 values between analytical systems correlate well n=200
  • 29. What would a CYP inhibition screening strategy look like? - Screen Smart Lead Lead Clinical Lead EIH-Enabling/ Identification Optimization Selection EIH/Beyond Assessment of Development of Assessment of Translational Liabilities SAR Risk Strategies Fluorescent screening – IC50 HLM screening – IC50 Regulatory assays • Tiered approach with increasing data robustness • IC50 to Ki to mechanism of inhibition • Determination of mechanism and Ki are very time and resource intensive • Does Rapid Fire screening change the approach?
  • 30. Streamlining P450 inhibition with rapid analytics - Screen Smart Lead Lead Clinical Lead EIH-Enabling/ Identification Optimization Selection EIH/Beyond Assessment of Development of Assessment of Translational Liabilities SAR Risk Strategies Fluorescent screening – IC50 HLM Rapid Fire screening – IC50 HLM screening – IC50 Regulatory assays Fast analytics can decrease the amount of resources needed for screening
  • 31. Other considerations • What P450 isoforms should be assayed? • At a minimum CYP2C9, CYP2D6, and CYP3A4 in initial screening • If resources allow, CYP1A2, CYP2B6, CYP2C8, and CYP2C19 • All are required for regulatory submissions • Also dependent on therapeutic areas of interest • For regulatory purposes, a second substrate is required for CYP3A4 • Multiple binding sites • It practical terms, few profound differences between substrates • What about other matrices, specifically hepatocytes • Some utility shown in literature examples, protein binding effects, permeability, etc. • May provide useful in complex DDIs, i.e. transporter effects, competing metabolic pathways, etc.
  • 32. Summary - Competitive inhibition • The FDA guidance regarding CYP inhibition has been updated to a more mechanistic approach • Key to addressing whether a potential new drug possess a rick of clinical DDI is robust input data • Inhibition kinetics • Input data for prediction of inhibitor concentration • Current industry standard assays for assessing inhibition kinetics are more than adequate • Continued increases in throughput and decreases in turnaround time are helpful
  • 33. P450 Time Dependent Inhibition
  • 34. Time dependent P450 inhibition results in clinically relevant DDIs • DDIs resulting from TDI can be more ominous and potentially harmful • Destruction of enzyme – lower enzymatic levels until synthesis restores normal levels • Potential toxicities resulting from TDI can be prolonged Interaction of diltiazem with midazolam 0.04 0.20 AUCi/AUC Systemic Concentration (mg/L) Systemic Concentration (mg/L) 0.03 Day 1 Day 6 - no inhibitor Day 6 with inhibitor Plasma concentration (ng/mL) 0.04 0.18 0.16 0.03 0.03 0.14 Day 1 – 1.3 0.03 0.12 0.02 0.02 0.10 0.02 0.02 0.08 0.06 0.01 0.01 0.04 0.01 0.00 0.01 Day 6 – 3.4 0.02 0.00 0 24 0.00 72 48 96 120 144 168 192 0 24 48 72 96 120 144 168 192 0 Time (h) 6 12 18 24 Time (h) MDZ MDZ+ DIL Time (hr) Day 8 – 2.0 DIL
  • 35.
  • 36. Breaking it down - Tier I • Really very little guidance related to risk in 2006 guidance • New guidance uses a simplistic model to predict changes in AUC • Same cut offs as for competitive inhibition ( 1.1 or 11) • Again, the key parameter is [I] • For CYP3A inhibitors, calculated for gut concentration, molar dose/250 mL • For other inhibitors, calculated as total maximal systemic concentration • Known to over predict the magnitude of DDI
  • 37. The “net effect” model and P450 TDI - Tier II • Identical to competitive inhibition in the additional factors considered • Incorporates, fraction metabolized (fm) of victim drug • Consideration of gut inhibition (important for CYP3A predictions) • Takes into account protein binding • But the key parameter is still [I] • From an assay perspective, little if any impact on P450 inhibition screening!
  • 38. How do we screen for time dependent CYP inhibitors? - Important considerations • What matrix should be used? • Recombinant P450s • Microsomes • Hepatocytes • What substrates should be used? • Fluorescent – in practice, not commonly utilized • Drug-like substrates • Screening strategies • Concentrations, KI, IC50 shift, progress curves, etc. • What isoforms should be screened? • “Screen Smart”
  • 39. Microsomal-based assays are the most common assays for primary screening • Microsomal-based assays are the most common platform used for TDI screening • Numerous assay formats exist • IC50 shift assay • Essentially determination of an IC50 with a pre-incubation phase 100 Increase pre- incubation time % CONTROL ACTIVITY 0 INHIBITOR CONC. • Advantage – can be combined with competitive inhibition screening, good for rank ordering compounds • Disadvantage – difficultly in defining what is a “relevant” shift (risk assessment)
  • 40. Microsomal-based assays are the most common assays for primary screening • Microsomal-based assays are the most common platform used for TDI screening • Numerous assay formats exist • Pre-incubation loss of activity assays 0.08uM 100 • Can be single point or multipoint concentration depending on needs 0.16uM 0.32uM 0.6uM 1.25uM V erapamil 2.5uM 0.075 5uM %Activity remaining 10uM 0.08uM 20uM 0.16uM 100 40uM 0.32uM 0.6uM 0.050 1.25uM KI S lo p e 2.5uM 5uM %Activity remaining 10uM 10 20uM 40uM 0.025 kinact 10 15 20 25 30 0.000 10 Pre-incubation Time (min) 0 10 20 30 40 50 uM • Advantage – multi-concentration assay is very informative 10 15 20 25 30 Pre-incubation Time (min) • Disadvantage – time and resource intensive for multipoint assay, single point assays difficult to interpret and define relevance
  • 41. But what about risk assessment with TDI? • With many DDI prediction algorithms for A 100 competitive P450 inhibition, the observed Erythromycin Diltiazem Verapmil versus predicted is good (within two-fold) . Predicted DDI (HLM) • However, when assessing risk for DDIs with 10 TDI, there is often a systematic over prediction of magnitude of effect • May lead to discarding compounds with no or little DDI risk 1 1 10 100 • Resource intensive follow up assays Observed DDI • Would hepatocytes be a better matrix for assessing TDI? • More physiologic system • Incorporates more complex systems, e.g. protein degradation, etc.
  • 42. Is there an increase in the accuracy of the DDI predictions with human hepatocyte data? A • 100 Erythromycin Diltiazem Verapmil The accuracy of the prediction of AUC increase . Predicted DDI (HLM) 10 with CYP3A4 TDI is better using kinetic parameters from human hepatocytes when compared to HLM 1 1 10 100 B Observed DDI 100 Erythromycin Verapmil • Diltiazem Why? . Predicted DDI (HH add method) • More physiological system 10 • Are their additional explanations? 1 1 10 100 Observed DDI
  • 43. The caveat about predictions of TDI • Unlike competitive inhibition predictions, TDI predictions are highly dependent on a system parameter, kdeg • This parameter cannot be directly measured in vivo, but has been estimated through various methods • The kdeg value for human CYP3A4 has a very wide range • Controversial as to what is the true value • Could kdeg be “fitted” for more accurate predictions in HLM? • Real value of hepatocyte systems is to assess DDI in a more complex system
  • 44. What would a P450 TDI inhibition screening strategy look like? Lead Lead Clinical Lead EIH-Enabling/ Identification Optimization Selection EIH/Beyond Assessment of Development of Assessment of Translational Liabilities SAR Risk Strategies Single concentration or IC50 shift Kinetics determination Regulatory assays • Tiered approach with increasing data robustness • Kinetic determination for risk assessment and further evaluation • Incorporate human hepatocytes for more complex interactions
  • 45. Summary - Time-dependent inhibition • The 2012 FDA guidance for assessing TDI has been updated significantly when compared to the 2006 guidance • Despite the update to the guidance, models tend to over predict the magnitude of drug interaction with CYP3A4 • More complex cell-based assays may provide an improvement in predictive power of mechanistic models
  • 47.
  • 48. Breaking it down - Tier I • Large changes on how induction is assessed when comparing the 2006 and 2012 guidance's • “40%” POC in enzyme activity • Move towards more pharmacological characterization of induction • d is a calibration term • In Tier I always set to 1 (most conservative) • Cut off is an R<1 (induction = reduction in AUC) • As with competitive and TDI, only total concentration is considered • Leads to many false positives
  • 49. The “net effect” model and P450 induction - Tier II • Similar to competitive and TDI • Incorporates, fraction metabolized (fm) of victim drug • Consideration of gut induction (important for CYP3A predictions) • Takes into account protein binding • At this level, d is calibrated against known positive controls for your system (typically <1) • Again, the key parameter is still [I] • Unlike inhibition, substantial changes to screening paradigms
  • 50. How do we screen for inducers of P450 metabolism? - Important considerations • Assay types • Ligand binding assay • Reporter gene (transactivation) assay • Hepatocytes • Read outs
  • 51. Mechanism of receptor-mediated induction - PXR-mediated CYP3A4 induction SRC-1 CYP3A4 mRNA RXRPXR Transcription TF’s RNA pol II XREM Promoter CYP3A4 gene Ligand Translation Ethinyl estradiol Efavirenz Warfarin Erythromycin Cyclosporin Tamoxifen Drug CYP3A4 Atorvastatin Carbamazepine Doxorubicin Indinavir Midazolam Drug-OH
  • 52. How do we screen for inducers of P450 metabolism? - Important considerations • Assay types • Ligand binding assay • Reporter gene (transactivation) assay • Hepatocytes • Read outs • IC50 • Reporter gene activity • mRNA • Enzyme activity • Concentrations?? • Guidance is for three • Is that enough to derive a robust EC50?
  • 53. Paradigm shift in induction screening • Previous guidance flagged a compound if it showed an increase in enzyme activity that was 40% of the positive control • New guidance is using mRNA • And, is more pharmacologically driven • What impact will this have? • Depends on screening strategy and philosophy • But, it will likely drive the need for many more hepatocyte experiments
  • 54. Why the change to mRNA? - Example of ritonavir •Why does ritonavir have an activity CYP3A4 Activity much lower than Fold Change (Over DMSO) vehicle control? 8 7 •Is this correct? 6 5 Does the mRNA 4 3 correlate? 2 1 0 ir ir r ir r ir n r ir vir n n SO vi vi Am avi av av av av pi av pi pi na na na m m m en in in in en en DM to to ifa ito fa fa qu qu qu pr pr pr Ri Ri Ri Ri R R Sa Sa Sa Am Am uM uM uM uM uM uM uM uM uM uM uM uM 1 10 1 1 1 10 0. 0. 1 10 1 1 1 10 0. 0. At first glance, ritonavir, amprenavir, and saquinavir appear to have no CYP induction liabilities.
  • 55. Fold Change (Over DMSO) D 0 2 4 6 8 10 12 0. M 1 SO uM 1 R uM if am 10 R pi n uM if am Ri pin fa m 0. pi 1 n uM - Example of ritonavir 1 Rit uM on 10 R av uM it on ir Ri avi 0. to r 1 na uM vi r Why the change to mRNA? 1 Am uM p CYP3A4 mRNA 10 A ren uM mp avi r r Am en a inducers of CYP3A4. pr vir 0. en 1 av uM ir 1 Sa uM qu 10 S ina uM aqu vir Sa ina qu vir in av mRNA data suggest ritonavir, amprenavir, and saquinavir are ir 55
  • 56. Other considerations • What P450 isoforms should be assayed? • Guidance states that the three most inducible P450 isoforms should be tested, CYP3A4, CYP1A2, and CYP2B6 • Only CYP3A4 is really understood from a molecular perspective AND a clinically relevant perspective… • Which assay can be used? • From a regulatory perspective, only hepatocyte data are acceptable • For screening purposes, other assays can be utilized • Reporter gene assays • Ease and convenience • Not always predictive of hepatocyte data • Ligand binding assay • Very high throughput • Relevance to hepatocyte data?
  • 57. Summary - P450 induction • One of the largest changes to the updated FDA guidance on drug interactions is in the assessment of P450 induction • Move from largely empirical assessment to a mechanistic assessment • Change from enzyme activity as a marker of induction to mRNA • Hepatocytes are the primary screening tool on which all risk assessments are based • Screening paradigms are being reevaluated and updated to address updated guidance
  • 58. Introduction What Do the Regulatory Agencies Say? What Does It Mean For Us? Putting It All Together Conclusions
  • 59. A word about the net effect model • As stated previously, the most predictive model for clinical DDIs in the literature • Importantly, it considers all forms of DDI • What is it’s impact on predictions? • Back to ritonavir…
  • 60. Changes in PK in compounds with inhibition and induction - Interaction of ritonavir and midazolam 0.05 12.00 Interaction driven by inhibition Systemic Concentration (mg/L) 0.04 10.00 0.04 AUC Ratio 8.00 Interaction a net effect of both 0.03 6.00 inhibition and induction 0.03 4.00 0.02 2.00 0.02 0.00 0.01 0 24 48 72 96 120 144 168 0.01 Time (Hours) 0.00 0 24 48 72 96 120 144 168 Median Population Rss values Induction/Interaction Threshold Time - Substrate (h) CSys CSys with Interaction • If only the inhibition potential is considered, the true magnitude of effect is over estimated • But, when both inhibition and induction are incorporated into the assessment, the magnitude of effect is far reduced • In this example, compound would still be considered an inhibitor of CYP3A • Strong inhibitor of CYP3A4 – Ki = 25 nM • What if the dose was much lower?
  • 61. What about a compound that is a weak inducer and inhibitor? Interaction of Compound X with midazolam 2.00 Inhibition Induction AUC Ratio 1.50 1.00 0.50 0.00 0 24 48 72 96 120 144 Time (Hours) Median Population Rss values Induction/Interaction Threshold • CYP3A4 Ki = 16 µM • CYP3A4 EC50 = 7 µM • In this case, a compound that may be considered a weak inducer may actually have no “net effect” for DDI
  • 62. A word about the cut offs • Where did these come from? Are they reasonable? • Related to bioequivalence • Is this correct? • Is there something better? • These are regulatory cut offs that will define the need for a clinical study • Internal decision making may define relevance?
  • 63.
  • 64. The impact of modeling and simulation • What is meant by “static” and “dynamic” models? • Static model = Net effect model • Dynamic models are essentially M&S programs that incorporate the net effect model into a prediction of PK from in vitro data • Simcyp • Gastroplus • Others • Can also be carried into PBPK models • Provide easy and convenient was to predict [I] • Potential “Black Box” trap • DANGER!!!
  • 65. What does the EMA guidance look like? • More comprehensive in that it discusses interactions beyond DDIs (food effect, PD, etc.) • For DDIs, all the same equations are utilized as in the FDA guidance • However, there is no tiered decision tree • May be more practical? • Again, it is all about [I] • All mechanistic and static models utilize unbound concentration with correction using a safety factor • Either 50- or 250-fold depending on degree of protein binding inhibition
  • 66. What does it really mean? • More modeling and simulation! • Depending on therapeutic area, any signal for inhibition by P450s will lead to a need for M&S to de-risk • Even simple static and mechanistic models require robust input data • More complex models can require more input data • A deep understanding of molecules (DDI parameters, metabolism, clearance, etc.)
  • 67. The true story on our friend diltiazem… • If simulations are conducted with only the inhibition parameters of the parent molecule, diltiazem, little to no interaction is predicted 0.02 Plasma concentration (mg/mL) Day 6 - no inhibitor 0.02 Day 6 - with inhibitor • pAUC ratio = 1.47 0.01 • oAUC ratio = 4.0 0.01 0.00 0 6 12 18 24 Time - hr • If however, the primary metabolite, desmethyldiltiazem, is included the predicted versus the observed fits much 0.03 better Plasma concentration (mg/mL) 0.03 Day 6 - no… 0.02 Day 6 with … • pAUC ratio = 3.41 0.02 • oAUC ratio = 4.0 0.01 0.01 0.00 0 6 12 18 24 Time (hr)
  • 68. What does it really mean? • More modeling and simulation • Depending on therapeutic area, any signal for inhibition by P450s will lead to a need for M&S to de-risk • Even simple static and mechanistic models require robust input data • More complex models can require even more input data • A deep understanding of molecules • Understanding of clearance pathways and metabolites • DDI risk for these metabolites • Increases the complexity for prediction of DDIs • More physiological systems for DDI screening, but not in true screening mode
  • 69. Introduction What Do the Regulatory Agencies Say? What Does It Mean For Us? Putting It All Together Conclusions
  • 70. Assessing DDIs in vitro in modern drug discovery As biology and medicinal chemistry has progressed the challenges for DMPK have increased • Poor solubility • Highly selective and potent compounds • Target pharmacology Identifying these caveats is important to understand the potential limitations in the in vitro data used to assess DDI potential These challenges are not going to go away for the vast majority of programs, and will not get easier for the DMPK scientist from Luo et al., DMD 2002 PHARMACOLOGISTS HAVE IT EASY!
  • 71. Take home messages • More in depth guidance for all areas of drug interactions • Assays in place in most of industry and contract research service groups are more than adequate to cover the requirements of the guidance • Development of more specialized/complex systems is of help, but not for screening – TDI and hepatocytes • Further emphasizes the need for a detailed understanding of a drugs disposition in defining the risk of a clinical drug interaction • Ritonavir • Diltiazem • Likely much more M&S because prediction of PK is more important (impact on screening!) • WHAT IS [I]??
  • 72.
  • 73. Classic example of P450 induction-DDI - the classic example rifampin from Niemi et al., Clin Pharmacokinet 2003.
  • 74. Determination of CYP3A TDI in human hepatocytes Hepatocyte HLM diltiazem 0.020 Mean Mean 0.015 Kobs (1/min) Diltiazem 0.010 KI 8.9 1.53 0.005 kinact 0.0228 0.024 kinact/KI 0.0026 0.016 0.000 0 20 40 60 80 100 Erythromycin Concentration (M) KI 67.9 5.33 0.08 Erythromycin kinact 0.079 0.061 0.06 Kobs (1/min) kinact / KI 0.0012 0.013 0.04 In general, the inactivation kinetic parameters are 0.02 higher in hepatocytes when 0.00 0 100 200 300 compared to HLM Concentration (M)
  • 75. Drug interactions are precipitated in multiple manners • Compounds as • Compounds as substrates (victims) inhibitors/inducers (perpetrators) • Not only P450s… • UGTs • Transporters • Can also be pharmacodynamic From: Williams et al, DMD 2004