SlideShare uma empresa Scribd logo
1 de 67
Baixar para ler offline
“OBIS is world's largest online system
                          for absorbing, integrating, and
                         accessing data about life in the
                                                   ocean”


                                      The
                                     Ocean
                                 Biogeographic
                              Information System

                      Ward Appeltans
                     IOC-UNESCO/IODE

IODE-XXII Pre-conference Workshop, 8-9 March 2013, Ensenada, Mexico
Census of Marine Life (2000-2010)
Census of Marine Life (2000-2010)

•    2,700 scientists
•    80+ nations
•    540 expeditions
•    US$ 650 million
•    2,600+ scientific publications
•    6,000+ potential new species
•    30 million distribution records and counting
Ocean Biogeographic
            Information System
OBIS is the world’s largest open access, online
repository of spatially referenced marine life data that:
   –  Nations can use to develop national and regional
      assessments, to discover trends, gaps and biodiversity
      hotspots and to meet their obligations to the Convention on
      Biological Diversity and other international commitments.
   –  Stimulates research about our oceans to generate new
      hypotheses concerning evolutionary processes, species
      distributions, and roles of organisms in marine systems on a
      global scale.
   –  Forms a baseline of marine life’s diversity, distribution, and
      abundance against which future change can be measured.
OBIS at IOC-UNESCO
 In June 2009, the 25th Session of the IOC Assembly decided through
 Resolution XXV-4 to adopt OBIS as part of IODE, because:
 1. Knowledge of the oceans biodiversity is of such importance to
 national and global environmental issues that the responsibility for its
 continuing success should be assumed by governments.
 2. IOC Member States have repeatedly identified the need to acquire
 ocean biogeographic data for national ocean and coastal resource
 management.
 3. Without accurate, repeatable and timely biological data it is
 impossible to address adequately the global ocean environmental
 issues of pollution, climate impact and mitigation, ocean acidification,
 ecosystem management, biodiversity loss, and habitat destruction
 (Resolution of the UN General Assembly A/RES/63/111)
 4. OBIS provided the opportunity to adopt an existing global network for
 biogeographic data and to attract the associated research community
 that can and should be a continuous part of the Commission’s ocean
 mandate.
10th Conference of the Parties to the
Convention on Biological Diversity
In Nagoya October 2010, the 10th Conference of the Parties to the Convention on
Biological Diversity (Decision COP10/29 para 10 and 35;) requested Member States
to further enhance globally networked scientific efforts, such as the Ocean
Biogeographic Information System (OBIS), to continue to update a comprehensive
and accessible global database of all forms of life in the sea, and further assess and
map the distribution and abundance of species in the sea, and;

Called upon IOC to facilitate availability and inter-operability of the best
available marine and coastal biodiversity data sets and information across global,
regional and national scales.

As a result OBIS is playing a crucial role in providing scientific guidance, data and
information for the identification of Ecologically or Biologically Significant marine
Areas, through a series of regional workshops in 2011, 2012 and 2013 convened by
the CBD, as part of the UN Strategic Plan for Biodiversity 2011-2020, and in
particular to contribute to Aichi Biodiversity Target 11 to conserve and sustainably
manage at least 10 per cent of coastal and marine areas by 2020.
CBD-COP10 listed OBIS as a key source of
 information for the identification of Ecologically or
 Biologically Significant Areas (EBSAs) part of CBD"
                                     Areas of high biodiversity

                                          Areas of special importance
                                             for the life history of a
                                                     species




Areas of significant naturalness


                   Areas of
              uniqueness or rarity
OBIS contributions to the CBD process:"
(1) national reporting and (2) open oceans & deep seas
                                                     "


 National EEZ data queries   Open-ocean ABNJ data queries




Open-access data made           International collaborative
available to all countries      data and research in areas
   and communities              beyond national jurisdiction
OBIS contributions to the CBD EBSA process
                                         "
     North Pacific regional EBSA workshop, Moscow,
                  25 Feb – 1 March 2013
OBIS contributions to the CBD EBSA process
                                              "


OBIS data are being used to
support the identification of
sites meeting the EBSA
criteria at each regional
workshop.

OBIS data layers include:

•  Species observations
•  Biological Diversity indices
•  IUCN Red List species             Eastern Tropical & Temperate
                                   Pacific EBSA workshop, Galapagos
                                           Ecuador, August 2012
OBIS contributions to the CBD EBSA process
                                               "
                         examples
Marine Mammal Observations              IUCN Red-List Species
Eastern Tropical & Temperate Pacific   Wider Caribbean and Western
   EBSA workshop, Galapagos            Mid-Atlantic workshop, Recife,
       Ecuador, August 2012                Brazil, February 2012
OBIS contributions to the CBD EBSA process
                                                  "

                                                      Biological Diversity all taxa
                                                      Wider Caribbean and Western
                                                      Mid-Atlantic workshop, Recife,
                                                          Brazil, February 2012




Proposed site meeting EBSA criteria:
Abrolhos Bank & Vitoria-Trindade Chain
Described in-part due to high regional biodiversity
                    as depicted using OBIS data.
Species distribution modeling (aquamaps)




Flathead mullet (point data)
Species distribution modeling (aquamaps)




Flathead mullet (native range)
Species distribution modeling (aquamaps)




Flathead mullet (Year 2050 range)
Summary Stats
Summary Stats
Summary Stats
Summary stats (1950-2004)
     # records increases steadily,
     until it begins to level off      records
     around 1990




                                       species
                        Decline # species through
                        the 1980s, but then an
                        increase subsequently
# new species recorded in OBIS

                2200



                2000



                1800
# New Species




                1600



                1400



                1200



                1000




                       1950   1960   1970          1980   1990   2000

                                            year
Data e-infrastructure Initiative for Fisheries Management
                        and Conservation of Marine Living Resources (i-Marine)



•    Research Infrastructures CP & CSA funded by the European
     Commission under the FP7 Capacities Programme - eInfrastructure
     Unit DG CONNECT (1 Nov 2011 - 30 April 2014)


•  Launch an initiative aimed at establishing and
   operating an e-infrastructure supporting the principles
   of the Ecosystem Approach to Fisheries Management
   and Conservation of Marine Living Resources.
Trend Analysis and biodiversity
assessments
•  What are the most common species (10 - 25 or n)
   reported in OBIS (per taxon, region, period) and is
   this changing over time?
•  Are we observing more or fewer species?
•  Species Status:
   –    Species with IUCN status per MPA
   –    Endemic species per MPA (Nr and occurrences)
   –    Species with IUCN status in < n MPA
   –    Edge effect; MPA near species distribution extension
The Unknown Ocean: A slice
 Red = many records, dark blue none
Coastal areas > open waters;
Surface areas > the deep sea;
Vertebrates and other large animals > smaller invertebrates;
Northern hemisphere > southern.




The vast midwaters,
Earth s largest
habitat by volume,
mostly unexplored
(~95%)



                                            Source: CoML OBIS
                                            Webb, O Dor, Vanden Berghe
World Ocean Assessment: First Global Integrated Marine
Assessment of the Regular Process for Global Reporting and Assessment
of the State of the Marine Environment, including Socioeconomic Aspects
          Part VI Assessment of marine biological diversity and habitats
          •  Section A — Overview of marine biological diversity
                –  Chapter 34 Scale of marine biological diversity
                –  Chapter 35 Extent of assessment of marine biological diversity
                –  Chapter 36 Overall status of major groups of species and habitats
          •  Section B — Marine ecosystems, species and habitats scientifically
              identified as threatened, declining or otherwise in need of special attention
              or protection
                –  Chapter 37 Coastal rock and biogenic habitats and related species
                –  Chapter 38 Coastal sediment habitats and related species
                –  Chapter 39 Shelf rock and biogenic reef habitats and related species
                –  Chapter 40 Shelf sediment habitats and related species
                –  Chapter 41 Deep sea habitats and related species
                –  Chapter 42 Water column habitats and related species
          •  Section C — Environmental, economic and/or social aspects of the
              conservation of marine species and habitats and capacity-building needs
                –  Chapter 43 Significant environmental, economic and/or social aspects in
                   relation to the conservation of marine species and habitats
                –  Chapter 44 Capacity-building needs
          •  Section D — Summary on marine biological diversity
                –  Chapter 45 Summary on marine biological diversity
Ocean Biogeographic Information System
           http://www.iobis.org/

                                Search data based on
                                             Taxonomy
                                              Datasets
                               Geographical boundaries
                                  Time, season, depth
                               Oceanographic variables
Association of observation points
 with oceanography
                                                       Observation data associated with
Environmental attributes from World Ocean Atlas          !  Bottom depth
                                                         !  Temperature
                                                         !  Salinity
                                                         !  Nitrogen / Oxygen
                                                         !  Phosphate / Silicate
                                                       Visualized through interactive graphs
                                                          !  Time-series graphs
                                                          !  Histograms




                      WOA09, http://www.nodc.noaa.gov/OC5/WOA09/pr_woa09.html
OBIS allows extraction of observations
   based on environmental conditions


                                                 Example map #1
                                                 Cetacean species observations in LME region
                                                  Celtic-Biscay Shelf
                                                 (no environmental conditions set)




Example map #2
Cetacean species observations in LME region
 Celtic-Biscay Shelf filtered by a temperature
range of 13 to 15 degrees
User Statistics: 1 March 2011-2013
(Google Analytics)


•    Visits: 187,906 (av. ± 400 on a regular working day)
•    Unique visitors: 124,587
•    Returning visitors: 35%
•    Pages/visit: 2,34
•    Mobile devices/ipad: 2%
User Statistics
     Country(/(Territory( Visits(   %(Visits(      Country(/(Territory(%(New(Visits(
   1"     United"States" 47858"        25,5"     1"        Hong"Kong"      95,31%"
   2"             Turkey" 12392"        6,6"     2"             Turkey"    86,77%"
   3"            Canada" 10412"         5,5"     3"              China"    76,04%"
   4"          Germany" 9948"           5,3"     4"        Philippines"    74,27%"
   5" United"Kingdom" 9301"             4,9"     5"          (not"set)"    74,03%"
   6"             France" 7628"         4,1"     6"               India"   73,24%"
   7"              Brazil" 7614"        4,1"     7"         ArgenGna"      71,15%"
   8"              Spain" 6808"         3,6"     8"                Italy"  70,52%"
   9"          Australia" 5556"         3,0"     9"     United"States"     68,14%"
  10"            Mexico" 5269"          2,8"    10"              Spain"    67,32%"
  11"              Japan" 5226"         2,8"    11"          Australia"    64,69%"
  12"           Belgium" 3890"          2,1"    12" United"Kingdom"        61,28%"
  13"                Italy" 3731"       2,0"    13"         Colombia"      61,00%"
  14"               India" 3330"        1,8"    14"              Brazil"   60,84%"
  15"          Portugal" 3155"          1,7"    15"      Netherlands"      60,70%"
  16"             Russia" 2637"         1,4"    16"          Germany"      59,74%"
  17"               Chile" 2413"        1,3"    17"              Japan"    56,58%"
  18"          (not"set)" 2118"         1,1"    18"          Portugal"     54,96%"
  19"      Netherlands" 2005"           1,1"    19"            Canada"     54,20%"
  20"         Colombia" 1659"           0,9"    20"             France"    53,49%"
  21"              China" 1653"         0,9"    21"      South"Korea"      53,16%"
  22"        Hong"Kong" 1622"           0,9"    22"            Mexico"     51,47%"
  23"      South"Korea" 1597"           0,8"    23"               Chile"   46,66%"
  24"        Philippines" 1364"         0,7"    24"           Belgium"     45,73%"
  25"         ArgenGna" 1345"           0,7"    25"             Russia"    44,22%"
User Statistics
                               City( Visits(
                             Aydin" 3854"
                         (not"set)" 3113"
                        Sao"Paulo" 2272"
                              Izmir" 2087"
                           Oberlin" 1695"
                           London" 1647"
                           Sydney" 1640"
                        Oostende" 1638"
                      Hong"Kong" 1622"
                      Dartmouth" 1605"
                              Paris" 1521"
                       Yokohama" 1484"
                          Istanbul" 1459"
                       Barcelona" 1458"
                     Mexico"City" 1334"
                        New"York" 1219"
                   Rio"de"Janeiro" 1163"
                  New"Brunswick" 1161"
                   San"Francisco" 1143"
                            Halifax" 1074"
                           Madrid" 1049"
                     Washington" 1026"
                       Singapore" 1014"
                            Lisbon" 1012"
                         Brisbane"    985"
Social Media
               •  272 members
                  –  88% senior level, 36% research
                     function



               •  148 followers
                  –  500–1,000 readers




               •  74 followers
Outreach

           •  PPT presentations
              –  100–200 views each



           •  OBIS Public Library
              –  OBIS papers classified per year, per
                 node
              –  25 papers in 2012


           •  Tracks OBIS publications
              –  >800 publications
Papers citing OBIS (Google Scholar)
                                   800                                                           12



                                   700
                                                                                                 10
Cummulative # papers citing OBIS




                                                                                                       # papers citing OBIS per month
                                   600

                                                                                                 08
                                   500



                                   400                                                           06



                                   300
                                                                                                 04

                                   200

                                                                                                 02
                                   100



                                     0                                                            00
                                      1998   2000   2002   2004   2006   2008   2010   2012   2014
OBIS data growth: # records
35 million geo-referenced species observations (+ 5 million since Jan 2011)
                            40



                            35



                            30



                            25
    #rrecords in millions




                            20



                            15



                            10



                            5



                            0
                            Apr-01   Sep-02   Jan-04   May-05   Oct-06   Feb-08   Jul-09   Nov-10   Apr-12   Aug-13
OBIS data growth: # datasets
 1,130 datasets (+ 219 since Jan 2011)
1200



1000



800



600



400



200



   0
   Apr]01"   Sep]02"   Jan]04"   May]05"   Oct]06"   Feb]08"   Jul]09"   Nov]10"   Apr]12"   Aug]13"
OBIS data growth:# records.k/dataset

  180



  160



  140



  120



  100



   80



   60



   40



   20



   0
   Apr-01   Sep-02   Jan-04   May-05   Oct-06   Feb-08   Jul-09   Nov-10   Apr-12   Aug-13
OBIS data growth: # marine species.k
 120,000 marine species (+ 5,000 since Jan 2011)
140.00



120.00



100.00



 80.00



 60.00



 40.00



 20.00



  0.00
     Apr-01   Sep-02   Jan-04   May-05   Oct-06   Feb-08   Jul-09   Nov-10   Apr-12   Aug-13
Very little historical data
                   1400000



                   1200000



                   1000000
#records in OBIS




                   800000



                   600000



                   400000



                   200000



                        0
                         1900   1920   1940   1960   1980   2000   2020
OBIS Network
                                  Stakeholders
OBIS is a                      Partnerships with CBD,
                              GBIF, EOL, GOBI, GOOS,
strategic                     FAO, UNEP-WCMC, ICES,
                                  SMEBD/WoRMS,
                             Species2000, GCMD, SCOR,
alliance of          Users            CBOL, …
                                                    OBIS task
hundreds of      policy makers,                      teams
scientists and     managers,
                                     OBIS
organisations     researchers,                                 OBIS
                      public          PO                      Group of
who contribute                                                Experts
data,                                               OBIS
information                                        Steering
                                                    Group
and expertise              OBIS Nodes
to OBIS.
                           Data providers
Six (informal) task teams

1.  Technical task team (data system architecture, and
    data portal)
2.  Documentation/Training task team (QC, data
    validation, standards and best practices)
3.  Data task team (data and metadata schemes)
4.  Governance task team (sustainability plan,
    governance model, vision, objectives, partnerships,
    funding)
5.  Taxonomy task team (name reconciliation)
6.  Outreach task team (communication strategy)
OBIS Data System Architecture

         portal                     Queries                                    GBIF    GEO
                                    Mapping
                  production        Extraction                                 EOL     iMarine

                                                                                LifeWatch
GCMD              staging
                                              classificati
                                                  on
                                                                  WoRMS
MarineRegions                                                     ITIS, CoL,
                                                                    IRMNG

WOD/ODP           assembly
                                    indexin
                                       g
 GEBCO
                                                             QC
           node             node   node
                                                             -Excel, DiGIR, IPT
                                                             -OBIS (extended DwC) schema
Data flows in OBIS
Current


                     Future
Draft ToR OBIS nodes
•    Receiving or harvesting marine biodiversity data (and metadata) from
     national, regional and international programs, and the scientific
     community at large.
•    Perform data validation (using standards, tools and best practices), as
     described in the OBIS cookbook (OBIS tier II).
•    Reporting the results of quality control directly to data collectors/
     originator.
•    Making data (and metadata) available to OBIS using agreed upon
     standards and formats (OBIS cookbook).
•    Control data access, terms of use and sharing policies.
•    Provide customer support (data queries, analyses, feedback).
•    Increase visibility and reach out (Communication and Outreach
     Strategy).
•    Build customized portals (e.g., multiple languages).
•    Comply with the IOC data policy for using and sharing OBIS data.
OBIS nodes (bold = NODC status, green = Candidate node)
1.  Antarctica/ AntOBIS 12. Mediterranean/         18. Global/ MicrOBIS
2.  Arctic/ ArcOD/AOOS     MedOBIS                 19. Global/ OBIS-
3.  Argentina/ArOBIS    13. South-East Pacific/       SEAMAP
4.  Australia/ OBIS-       ESPOBIS                 20. Global/ Hexacorals
    Australia           14. South-West Atlantic/   21. Global/ FishBase
5.  Black Sea/ BlackSea- WSAOBIS                   22. Global/ Seamounts
    OBIS                15. South-West Pacific/    23. Gulf of Aden
6.  Canada/ OBIS-          NZOBIS
                                                   24. South-East Asia
    Canada              16. Sub-Saharan/
                                                   25. Caribbean
7.  China/ OBIS-China      AfrOBIS
8.  Europe/ EurOBIS     17. USA/ OBIS-USA
9.  India/ IndOBIS
10. Japan/ OBIS-Japan
11. Korea/ KOBIS
Establishment of new OBIS nodes
(for consideration at IODE-XXII)
•    If the institute is an existing NODC:
       –  Send a letter of “expression of interest” to the OBIS project office, wishing to
          join the OBIS network of nodes.

•    If the institute is not an existing NODC, but wishes to apply for an NODC
     status:
       –  Follow the procedure for NODCs and include your wish to join the OBIS
          network of nodes.

•    If the institute is an existing SODC (if the SODC entity type is adopted by
     the 22nd session of the IODE Committee):
       –  Send a letter of “expression of interest” to the OBIS project office, wishing to
          join the OBIS network.

•    If the institute is not an existing SODC, but wishes to apply for an SODC
     status:
       –  Follow the procedure for SODCs and include your wish to join the OBIS
          network of nodes.
Establishment of new OBIS nodes
(for consideration at IODE-XXII)


The extra information required for OBIS to include in the application/
expression of interest is the following:

     –  Indicate the level of commitment to function as an OBIS tier II and/
        or tier III node;
     –  Indicate the person who will act as the OBIS node manager (and
        deputy).

Applications will be reviewed by the IODE Steering Group for OBIS and a
decision will be made within two weeks after confirmation of receipt. The
results of the decision from the 22nd session of the IODE Committee will
affect the final process developed by the SG-OBIS.
OBIS Standards and Best Practices
 •  Metadata, no single standard
     –  ISO19115 compliancy (GCMD, FGCD, IMIS, EML..)
 •  Data
     –  Geography: OBIS extension of Darwin Core
     –  Taxonomy: basis = World Register of Marine Species,
        but also ITIS, CoL and IRMNG (when not in WoRMS).
 •  Data harvesting protocols
     –  GBIFs Integrated Publishing Toolkit (IPT) (txt file + EML)
     –  DiGIR (XML)
     –  CSV
 •  Data publishing services
     –  Maps using Open layers
     –  OGC/Open GIS web map/feature/coverage services
        (OBIS GeoServer)
QC/data validation/quality flags

•  Principle OBIS never change records
     –  data cleaning needs to be done at the expert/data providers
        level.
•  OBIS can perform data integrity checks (completeness,
   correctness), add precision and accuracy information (quality
   flags)
QC of metadata

•  Metadata"should"contain:"
   –    Title"(dataset"name,"comprehensive,"not"just"an"acronym)"
   –    CitaGon"(journal"style,"include"Gtle"of"dataset)"
   –    General"descripGon"(abstract)"
   –    Contact"informaGon"(name"–"insGtute"–"email)"
   –    User"restricGons"(most%cases:% freely%available%if%cited )"
   –    Sampling"design"(collaborate"with"GE]BICH"and"ODSBP)"
•  Metadata"can"also"contain:"
   –    Keywords,"habitat,"species"funcGonal"groups"
   –    Taxonomic"–"temporal"–"geographic"scope/boundaries"
   –    Links"(online%data,%metadata,%project%page,%DiGIR,%IPT%…)"
   –    Associated"documentaGon"(e.g.,%reports,%publica@ons%…)"
QC of data

•    Required"(mandatory)"fields"
•    Taxonomy"
•    Life"stage"(need"for"vocab"]>"GE]BICH/ODSBP)"
•    Gender"(need"for"vocab"]>"GE]BICH/ODSBP)"
•    Geographic"locaGons"(link"to"gazeheer)"
•    Depth"
•    Date"–"Gme"
     –  Start"&"end"fields"
•  Observed"individuals"
•  Basis"of"record"(literature,"specimen,"observaGon)"
Taxonomic QC
•    Taxon Match tool to check if name is available in WoRMS, ITIS, IRMNG, CoL (if
     name not available in any of those -> more elaborate search in: PaleoDB, IPNI,
     Euro+Med Plantbase, Index Fungorum, Fishbase, BOLD, Web of Science
•    Avoid false matches (homonyms) by indicating higher taxonomic group
•    Translate common names and cases of cf., sp., complexes etc to higher
     taxonomic level:
     Received taxon name                  Matching name

     Mytiluus sp.                         Mytilus
     Gadus cfr. morhua                    Gadus
     Cladocera/Ostracoda                  Crustacea (= common subphylum)
     Sponges                              Porifera
     Bamboo sharks                        Galeomorphi (superorder)


 •  Add taxon LSID to record (e.g. TSN, AphiaID)
Name validation tool: Taxon Match



             This(tool(uses(the(following(components:(
                 :TAXAMATCH(fuzzy(matching(algorithm(by(Tony(Rees(
                 :PHP/MySql(port(of(TAXAMATCH(by(Michael(Giddens(
                 :ScienHfic(Names(Parser(by(Dmitry(Mozzherin(
TAXON MATCH
TAXON MATCH
TAXON MATCH
SOAP/WSDL/REST web service
Examples
Web Services

System(   Field(          Key(       Mechanism(
WoRMS"    Taxon"name"     AphiaID"   webservice"
WoRMS"    Parent"taxon"   AphiaID"   webservice"
WoRMS"    Child"taxa"     AphiaID"   webservice"
WoRMS"    Synonyms"       AphiaID"   webservice"
WoRMS"    Common"name" AphiaID"      webservice"
WoRMS"    References"     AphiaID"   webservice"
WoRMS"    Ahributes"      AphiaID"   Not"yet"
Taxonomic QC

•  Current"situaGon"
  ""
  "±"198,000"taxon"names"in"OBIS:"
     –  ±"153,500"matched"to"WoRMS"" Overlap"of"±"72"000"taxa"
     –  ±"80,000"matched"to"ITIS"
     –  ±"31,500"not"matched"to"any"standard"(WoRMS,"ITIS,"CoL,"IRMNG)"

•  Plan OBIS Taxonomic Task Team
   –  April 2013: Status report on numbers of errors (per
      taxonomic groups and time)
   –  June 2013: Preliminary Cleaning Assessment
   –  Cleaning up residual errors – Ongoing
Geographic QC

•  Fields in OBIS
     1.  LaHtude(
     2.  Longitude(
     3.  Start"laGtude"
     4.  End"laGtude"
     5.  Start"longitude"
     6.  End"longitude"
     7.  Coordinate"precision"
     8.  Start/end"coordinate"precision"
     9.  Bounding"box"
     10. ConGnent"ocean"
     11. Country"
     12. State"province"
     13. County"
     14. Locality"
Geographic QC
•  Are"the""laGtude"and"the"longitude"completed"and"are"their"values"different"
   from"0?"
•  Are"the"laGtude"or"the"longitude"completed"and"are"their"decimal"values"
   between"]90"and"+90"(laGtude)"and"between"]180"and"+180"(longitude)"
   (WGS84)?"
•  Decimal"check"(X,aabb":"if"aa"<59"and"bb"<59"it"may"mean"the"coordinates"are"
   not"decimals,"but"degrees,"minutes"and"seconds)"""
•  Are"the"coordinates"situated"in"sea"or"coast"(buffer"20km)?"
•  Are"the"coordinates"situated"in"the"right"geographical"area"(fields"9]14,"or""
   e.g."AtlanGc"spohed"dolphins"should"not"be"found"in"the"Pacific)?"
•  Is"the"observaGon"point"not"an"outlier"in"the"dataset?""
    –  Is"the"observaGon"point"not"more"than"4"X"standard"deviaGon"from"the"centroid"of"the"
       dataset?"
•  Is"the"observaGon"point"not"an"outlier"in"the"observaGons"of"the"species?""
    –  Is"the"observaGon"point"not"more"than"4"X"standard"deviaGon"from"the"centroid"of"the"
       observaGons"from"that"species?
Geographic QC




                              Example%dataset%“Marine%Turtles”:%
        sigh@ngs%and%strandings%of%marine%turtles%around%the%coast%of%UK%and%Ireland”"
   Outliers%due%to%missing%of%minus%sign.%Correc@ons%made%aKer%consulta@on%data%provider."
Geographic QC

•  Related to depth:
   –  Is the minimum depth < maximum depth?
   –  Is the observation depth possible if compared with a depth
      map (include margin)?
   –  Is the observation depth possible if compared with the given
      depth range of the species


•  Related to environmental parameters:
   –  Is the observation possible if compared with the given (min-
      max) salinity, temperature, oxygen, nutrient range of the
      species
QC Presence, abundance, biomass

•  Is the field 'sample size' completed if the value of the
   field 'Observed individual count’ or 'observed weight'
   >0?
Date QC
•    Fields in OBIS
      1.  YearCollected
      2.  MonthCollected
      3.  DayCollected

      4.  StartYearCollected
      5.  StartMonthCollected
      6.  StartDayCollected
      7.  EndYearCollected
      8.  EndMonthCollected
      9.  EndDayCollected

      10.  StartTimeOfDay
      11.  EndTimeOfDay
      12.  TimeOfDay

      13.  Timezone
Date QC

•  Is the collection date (year, month, day, end-start)
   completed and valid (i.e. between 1300 and now)?
•  Is the ‘collection date’ <= the ‘date identified’ and <= the
   ‘last modified date’
•  If the start date and the end date are completed, is the
   start date < the end date (taking into consideration the
   given time)?
•  Is the time/starttime/endtime >= 0 and <24 and is the
   timezone completed
Date QC
=>produce time graph for visual check.
Future plans

•  Expand on data types (marine extension of Darwin
   Core)
   –  Tracking data
   –  Acoustics
   –  Images (e.g. fin patterns)
•  Expand geographical coverage
•  Capacity building
   –  Biological data management
   –  Regional marine biological observatories
•  Close collaboration with IODE projects and IOC and
   UNESCO programmes

Mais conteúdo relacionado

Mais procurados

OPWALL Project Proposal 2016
OPWALL Project Proposal 2016OPWALL Project Proposal 2016
OPWALL Project Proposal 2016
Kevin Schmidt
 
Tyre ar slides_n_f
Tyre ar slides_n_fTyre ar slides_n_f
Tyre ar slides_n_f
Ziad Samaha
 
VL CV 2016 - with personal info
VL CV 2016 - with personal infoVL CV 2016 - with personal info
VL CV 2016 - with personal info
Vic Lewynsky
 
State of the World's Waterbirds 2010 - Full Publication
State of the World's Waterbirds 2010 - Full PublicationState of the World's Waterbirds 2010 - Full Publication
State of the World's Waterbirds 2010 - Full Publication
Wetlands International
 
nearshore_fish_fauna_of_bonne_bay
nearshore_fish_fauna_of_bonne_baynearshore_fish_fauna_of_bonne_bay
nearshore_fish_fauna_of_bonne_bay
Jens J. Currie
 
Aspects of life-history strategy of Marcusenius senegalensis (Pisces: Osteogl...
Aspects of life-history strategy of Marcusenius senegalensis (Pisces: Osteogl...Aspects of life-history strategy of Marcusenius senegalensis (Pisces: Osteogl...
Aspects of life-history strategy of Marcusenius senegalensis (Pisces: Osteogl...
AI Publications
 
C2.02: Informing Priorities for Biological and Ecosystem Observations, suppor...
C2.02: Informing Priorities for Biological and Ecosystem Observations, suppor...C2.02: Informing Priorities for Biological and Ecosystem Observations, suppor...
C2.02: Informing Priorities for Biological and Ecosystem Observations, suppor...
Blue Planet Symposium
 
Intro parcmarin amp2010-anglais
Intro parcmarin amp2010-anglaisIntro parcmarin amp2010-anglais
Intro parcmarin amp2010-anglais
cwfli2010
 

Mais procurados (19)

OPWALL Project Proposal 2016
OPWALL Project Proposal 2016OPWALL Project Proposal 2016
OPWALL Project Proposal 2016
 
Pcra lecture (camotes pcra orientation)
Pcra lecture (camotes pcra orientation)Pcra lecture (camotes pcra orientation)
Pcra lecture (camotes pcra orientation)
 
rio20-miloslavich
rio20-miloslavichrio20-miloslavich
rio20-miloslavich
 
Tyre ar slides_n_f
Tyre ar slides_n_fTyre ar slides_n_f
Tyre ar slides_n_f
 
VL CV 2016 - with personal info
VL CV 2016 - with personal infoVL CV 2016 - with personal info
VL CV 2016 - with personal info
 
State of the World's Waterbirds 2010 - Full Publication
State of the World's Waterbirds 2010 - Full PublicationState of the World's Waterbirds 2010 - Full Publication
State of the World's Waterbirds 2010 - Full Publication
 
OBIS, a global biodiversity data-sharing platform for ABNJ
OBIS, a global biodiversity data-sharing platform for ABNJOBIS, a global biodiversity data-sharing platform for ABNJ
OBIS, a global biodiversity data-sharing platform for ABNJ
 
FISH DICTIONARY (GLOSSARY)
FISH DICTIONARY (GLOSSARY)FISH DICTIONARY (GLOSSARY)
FISH DICTIONARY (GLOSSARY)
 
nearshore_fish_fauna_of_bonne_bay
nearshore_fish_fauna_of_bonne_baynearshore_fish_fauna_of_bonne_bay
nearshore_fish_fauna_of_bonne_bay
 
Lavides_et_al_2010_Env_Cons
Lavides_et_al_2010_Env_ConsLavides_et_al_2010_Env_Cons
Lavides_et_al_2010_Env_Cons
 
Cpue
CpueCpue
Cpue
 
A field report on the Nijhum Dwip, Hatiya Island
 A field report on the  Nijhum Dwip, Hatiya Island A field report on the  Nijhum Dwip, Hatiya Island
A field report on the Nijhum Dwip, Hatiya Island
 
Aspects of life-history strategy of Marcusenius senegalensis (Pisces: Osteogl...
Aspects of life-history strategy of Marcusenius senegalensis (Pisces: Osteogl...Aspects of life-history strategy of Marcusenius senegalensis (Pisces: Osteogl...
Aspects of life-history strategy of Marcusenius senegalensis (Pisces: Osteogl...
 
Faunafri Santiago
Faunafri SantiagoFaunafri Santiago
Faunafri Santiago
 
DesertSea.2015Portfolio.2
DesertSea.2015Portfolio.2DesertSea.2015Portfolio.2
DesertSea.2015Portfolio.2
 
C2.02: Informing Priorities for Biological and Ecosystem Observations, suppor...
C2.02: Informing Priorities for Biological and Ecosystem Observations, suppor...C2.02: Informing Priorities for Biological and Ecosystem Observations, suppor...
C2.02: Informing Priorities for Biological and Ecosystem Observations, suppor...
 
Overview of the Saguenay-St.Lawrence Marine Park
Overview of the Saguenay-St.Lawrence Marine ParkOverview of the Saguenay-St.Lawrence Marine Park
Overview of the Saguenay-St.Lawrence Marine Park
 
Intro parcmarin amp2010-anglais
Intro parcmarin amp2010-anglaisIntro parcmarin amp2010-anglais
Intro parcmarin amp2010-anglais
 
A field trip report on the academic work in the Nijhum Dwip, Hatiya Island
A field trip report on the academic work in the  Nijhum Dwip, Hatiya IslandA field trip report on the academic work in the  Nijhum Dwip, Hatiya Island
A field trip report on the academic work in the Nijhum Dwip, Hatiya Island
 

Semelhante a OBIS at IODE-XXII pre-conference workshop

Black Sea Environment (Kideys/Myroshnychenko)
Black Sea Environment (Kideys/Myroshnychenko)Black Sea Environment (Kideys/Myroshnychenko)
Black Sea Environment (Kideys/Myroshnychenko)
blackseaforum
 
The necessity of a multi-level framework for understanding coastal management...
The necessity of a multi-level framework for understanding coastal management...The necessity of a multi-level framework for understanding coastal management...
The necessity of a multi-level framework for understanding coastal management...
weADAPT
 
3.1 the use of fish as ecological indicators en
3.1 the use of fish as ecological indicators en3.1 the use of fish as ecological indicators en
3.1 the use of fish as ecological indicators en
International WaterCentre
 
Fishing in the antipodes. Fishers and fishes in two opposite poles
Fishing in the antipodes. Fishers and fishes in two opposite polesFishing in the antipodes. Fishers and fishes in two opposite poles
Fishing in the antipodes. Fishers and fishes in two opposite poles
Pablo Pita Orduna
 
Assessment of size structures, length-weight models and condition factors of ...
Assessment of size structures, length-weight models and condition factors of ...Assessment of size structures, length-weight models and condition factors of ...
Assessment of size structures, length-weight models and condition factors of ...
AI Publications
 

Semelhante a OBIS at IODE-XXII pre-conference workshop (20)

Marine biodiversity indicators
Marine biodiversity indicatorsMarine biodiversity indicators
Marine biodiversity indicators
 
OBIS and BBNJ
OBIS and BBNJ OBIS and BBNJ
OBIS and BBNJ
 
OBIS, a global biodiversity data-sharing platform for ABNJ
OBIS, a global biodiversity data-sharing platform for ABNJOBIS, a global biodiversity data-sharing platform for ABNJ
OBIS, a global biodiversity data-sharing platform for ABNJ
 
OBIS, the Ocean Biogeographic Information System, as a data sharing platform ...
OBIS, the Ocean Biogeographic Information System, as a data sharing platform ...OBIS, the Ocean Biogeographic Information System, as a data sharing platform ...
OBIS, the Ocean Biogeographic Information System, as a data sharing platform ...
 
Marine Institute: Overview
Marine Institute: Overview Marine Institute: Overview
Marine Institute: Overview
 
Fish biodiversity and food supply: Species numbers in the wild and exploited;...
Fish biodiversity and food supply: Species numbers in the wild and exploited;...Fish biodiversity and food supply: Species numbers in the wild and exploited;...
Fish biodiversity and food supply: Species numbers in the wild and exploited;...
 
Black Sea Environment (Kideys/Myroshnychenko)
Black Sea Environment (Kideys/Myroshnychenko)Black Sea Environment (Kideys/Myroshnychenko)
Black Sea Environment (Kideys/Myroshnychenko)
 
The necessity of a multi-level framework for understanding coastal management...
The necessity of a multi-level framework for understanding coastal management...The necessity of a multi-level framework for understanding coastal management...
The necessity of a multi-level framework for understanding coastal management...
 
The Role of OBIS in Canadian Research Data Policy
The Role of OBIS in Canadian Research Data PolicyThe Role of OBIS in Canadian Research Data Policy
The Role of OBIS in Canadian Research Data Policy
 
Applying an ecosystem-based approach to fisheries management: focus on seamou...
Applying an ecosystem-based approach to fisheries management: focus on seamou...Applying an ecosystem-based approach to fisheries management: focus on seamou...
Applying an ecosystem-based approach to fisheries management: focus on seamou...
 
Measuring Biodiversity.pptx_Methods&processes
Measuring Biodiversity.pptx_Methods&processesMeasuring Biodiversity.pptx_Methods&processes
Measuring Biodiversity.pptx_Methods&processes
 
3.1 the use of fish as ecological indicators en
3.1 the use of fish as ecological indicators en3.1 the use of fish as ecological indicators en
3.1 the use of fish as ecological indicators en
 
Amibio biodivriede2010
Amibio biodivriede2010Amibio biodivriede2010
Amibio biodivriede2010
 
Ocean Biogeographic Information System - for NOPP Biodiversity Ad Hoc Working...
Ocean Biogeographic Information System - for NOPP Biodiversity Ad Hoc Working...Ocean Biogeographic Information System - for NOPP Biodiversity Ad Hoc Working...
Ocean Biogeographic Information System - for NOPP Biodiversity Ad Hoc Working...
 
Discovering the impact of climate change on the marine species, Aquamaps
Discovering the impact of climate change on the marine species, AquamapsDiscovering the impact of climate change on the marine species, Aquamaps
Discovering the impact of climate change on the marine species, Aquamaps
 
Biodiversity - Juan Jaen ICSU ROLAC
Biodiversity - Juan Jaen ICSU ROLACBiodiversity - Juan Jaen ICSU ROLAC
Biodiversity - Juan Jaen ICSU ROLAC
 
Fishing in the antipodes. Fishers and fishes in two opposite poles
Fishing in the antipodes. Fishers and fishes in two opposite polesFishing in the antipodes. Fishers and fishes in two opposite poles
Fishing in the antipodes. Fishers and fishes in two opposite poles
 
Assessment of size structures, length-weight models and condition factors of ...
Assessment of size structures, length-weight models and condition factors of ...Assessment of size structures, length-weight models and condition factors of ...
Assessment of size structures, length-weight models and condition factors of ...
 
Register of Antarctic Marine Species - AquaRES
Register of Antarctic Marine Species - AquaRESRegister of Antarctic Marine Species - AquaRES
Register of Antarctic Marine Species - AquaRES
 
Pulbic Lecture Slide Presentation (4.4.2014) Who governs the sea? Ways toward...
Pulbic Lecture Slide Presentation (4.4.2014) Who governs the sea? Ways toward...Pulbic Lecture Slide Presentation (4.4.2014) Who governs the sea? Ways toward...
Pulbic Lecture Slide Presentation (4.4.2014) Who governs the sea? Ways toward...
 

Último

Histor y of HAM Radio presentation slide
Histor y of HAM Radio presentation slideHistor y of HAM Radio presentation slide
Histor y of HAM Radio presentation slide
vu2urc
 
Artificial Intelligence: Facts and Myths
Artificial Intelligence: Facts and MythsArtificial Intelligence: Facts and Myths
Artificial Intelligence: Facts and Myths
Joaquim Jorge
 

Último (20)

Connector Corner: Accelerate revenue generation using UiPath API-centric busi...
Connector Corner: Accelerate revenue generation using UiPath API-centric busi...Connector Corner: Accelerate revenue generation using UiPath API-centric busi...
Connector Corner: Accelerate revenue generation using UiPath API-centric busi...
 
Strategies for Unlocking Knowledge Management in Microsoft 365 in the Copilot...
Strategies for Unlocking Knowledge Management in Microsoft 365 in the Copilot...Strategies for Unlocking Knowledge Management in Microsoft 365 in the Copilot...
Strategies for Unlocking Knowledge Management in Microsoft 365 in the Copilot...
 
The 7 Things I Know About Cyber Security After 25 Years | April 2024
The 7 Things I Know About Cyber Security After 25 Years | April 2024The 7 Things I Know About Cyber Security After 25 Years | April 2024
The 7 Things I Know About Cyber Security After 25 Years | April 2024
 
Understanding Discord NSFW Servers A Guide for Responsible Users.pdf
Understanding Discord NSFW Servers A Guide for Responsible Users.pdfUnderstanding Discord NSFW Servers A Guide for Responsible Users.pdf
Understanding Discord NSFW Servers A Guide for Responsible Users.pdf
 
Histor y of HAM Radio presentation slide
Histor y of HAM Radio presentation slideHistor y of HAM Radio presentation slide
Histor y of HAM Radio presentation slide
 
Apidays New York 2024 - Scaling API-first by Ian Reasor and Radu Cotescu, Adobe
Apidays New York 2024 - Scaling API-first by Ian Reasor and Radu Cotescu, AdobeApidays New York 2024 - Scaling API-first by Ian Reasor and Radu Cotescu, Adobe
Apidays New York 2024 - Scaling API-first by Ian Reasor and Radu Cotescu, Adobe
 
Scaling API-first – The story of a global engineering organization
Scaling API-first – The story of a global engineering organizationScaling API-first – The story of a global engineering organization
Scaling API-first – The story of a global engineering organization
 
Tech Trends Report 2024 Future Today Institute.pdf
Tech Trends Report 2024 Future Today Institute.pdfTech Trends Report 2024 Future Today Institute.pdf
Tech Trends Report 2024 Future Today Institute.pdf
 
Partners Life - Insurer Innovation Award 2024
Partners Life - Insurer Innovation Award 2024Partners Life - Insurer Innovation Award 2024
Partners Life - Insurer Innovation Award 2024
 
A Year of the Servo Reboot: Where Are We Now?
A Year of the Servo Reboot: Where Are We Now?A Year of the Servo Reboot: Where Are We Now?
A Year of the Servo Reboot: Where Are We Now?
 
Tata AIG General Insurance Company - Insurer Innovation Award 2024
Tata AIG General Insurance Company - Insurer Innovation Award 2024Tata AIG General Insurance Company - Insurer Innovation Award 2024
Tata AIG General Insurance Company - Insurer Innovation Award 2024
 
Data Cloud, More than a CDP by Matt Robison
Data Cloud, More than a CDP by Matt RobisonData Cloud, More than a CDP by Matt Robison
Data Cloud, More than a CDP by Matt Robison
 
Boost PC performance: How more available memory can improve productivity
Boost PC performance: How more available memory can improve productivityBoost PC performance: How more available memory can improve productivity
Boost PC performance: How more available memory can improve productivity
 
2024: Domino Containers - The Next Step. News from the Domino Container commu...
2024: Domino Containers - The Next Step. News from the Domino Container commu...2024: Domino Containers - The Next Step. News from the Domino Container commu...
2024: Domino Containers - The Next Step. News from the Domino Container commu...
 
How to Troubleshoot Apps for the Modern Connected Worker
How to Troubleshoot Apps for the Modern Connected WorkerHow to Troubleshoot Apps for the Modern Connected Worker
How to Troubleshoot Apps for the Modern Connected Worker
 
GenAI Risks & Security Meetup 01052024.pdf
GenAI Risks & Security Meetup 01052024.pdfGenAI Risks & Security Meetup 01052024.pdf
GenAI Risks & Security Meetup 01052024.pdf
 
presentation ICT roal in 21st century education
presentation ICT roal in 21st century educationpresentation ICT roal in 21st century education
presentation ICT roal in 21st century education
 
ProductAnonymous-April2024-WinProductDiscovery-MelissaKlemke
ProductAnonymous-April2024-WinProductDiscovery-MelissaKlemkeProductAnonymous-April2024-WinProductDiscovery-MelissaKlemke
ProductAnonymous-April2024-WinProductDiscovery-MelissaKlemke
 
Artificial Intelligence: Facts and Myths
Artificial Intelligence: Facts and MythsArtificial Intelligence: Facts and Myths
Artificial Intelligence: Facts and Myths
 
Automating Google Workspace (GWS) & more with Apps Script
Automating Google Workspace (GWS) & more with Apps ScriptAutomating Google Workspace (GWS) & more with Apps Script
Automating Google Workspace (GWS) & more with Apps Script
 

OBIS at IODE-XXII pre-conference workshop

  • 1. “OBIS is world's largest online system for absorbing, integrating, and accessing data about life in the ocean” The Ocean Biogeographic Information System Ward Appeltans IOC-UNESCO/IODE IODE-XXII Pre-conference Workshop, 8-9 March 2013, Ensenada, Mexico
  • 2. Census of Marine Life (2000-2010)
  • 3. Census of Marine Life (2000-2010) •  2,700 scientists •  80+ nations •  540 expeditions •  US$ 650 million •  2,600+ scientific publications •  6,000+ potential new species •  30 million distribution records and counting
  • 4. Ocean Biogeographic Information System OBIS is the world’s largest open access, online repository of spatially referenced marine life data that: –  Nations can use to develop national and regional assessments, to discover trends, gaps and biodiversity hotspots and to meet their obligations to the Convention on Biological Diversity and other international commitments. –  Stimulates research about our oceans to generate new hypotheses concerning evolutionary processes, species distributions, and roles of organisms in marine systems on a global scale. –  Forms a baseline of marine life’s diversity, distribution, and abundance against which future change can be measured.
  • 5. OBIS at IOC-UNESCO In June 2009, the 25th Session of the IOC Assembly decided through Resolution XXV-4 to adopt OBIS as part of IODE, because: 1. Knowledge of the oceans biodiversity is of such importance to national and global environmental issues that the responsibility for its continuing success should be assumed by governments. 2. IOC Member States have repeatedly identified the need to acquire ocean biogeographic data for national ocean and coastal resource management. 3. Without accurate, repeatable and timely biological data it is impossible to address adequately the global ocean environmental issues of pollution, climate impact and mitigation, ocean acidification, ecosystem management, biodiversity loss, and habitat destruction (Resolution of the UN General Assembly A/RES/63/111) 4. OBIS provided the opportunity to adopt an existing global network for biogeographic data and to attract the associated research community that can and should be a continuous part of the Commission’s ocean mandate.
  • 6. 10th Conference of the Parties to the Convention on Biological Diversity In Nagoya October 2010, the 10th Conference of the Parties to the Convention on Biological Diversity (Decision COP10/29 para 10 and 35;) requested Member States to further enhance globally networked scientific efforts, such as the Ocean Biogeographic Information System (OBIS), to continue to update a comprehensive and accessible global database of all forms of life in the sea, and further assess and map the distribution and abundance of species in the sea, and; Called upon IOC to facilitate availability and inter-operability of the best available marine and coastal biodiversity data sets and information across global, regional and national scales. As a result OBIS is playing a crucial role in providing scientific guidance, data and information for the identification of Ecologically or Biologically Significant marine Areas, through a series of regional workshops in 2011, 2012 and 2013 convened by the CBD, as part of the UN Strategic Plan for Biodiversity 2011-2020, and in particular to contribute to Aichi Biodiversity Target 11 to conserve and sustainably manage at least 10 per cent of coastal and marine areas by 2020.
  • 7. CBD-COP10 listed OBIS as a key source of information for the identification of Ecologically or Biologically Significant Areas (EBSAs) part of CBD" Areas of high biodiversity Areas of special importance for the life history of a species Areas of significant naturalness Areas of uniqueness or rarity
  • 8. OBIS contributions to the CBD process:" (1) national reporting and (2) open oceans & deep seas " National EEZ data queries Open-ocean ABNJ data queries Open-access data made International collaborative available to all countries data and research in areas and communities beyond national jurisdiction
  • 9. OBIS contributions to the CBD EBSA process " North Pacific regional EBSA workshop, Moscow, 25 Feb – 1 March 2013
  • 10. OBIS contributions to the CBD EBSA process " OBIS data are being used to support the identification of sites meeting the EBSA criteria at each regional workshop. OBIS data layers include: •  Species observations •  Biological Diversity indices •  IUCN Red List species Eastern Tropical & Temperate Pacific EBSA workshop, Galapagos Ecuador, August 2012
  • 11. OBIS contributions to the CBD EBSA process " examples Marine Mammal Observations IUCN Red-List Species Eastern Tropical & Temperate Pacific Wider Caribbean and Western EBSA workshop, Galapagos Mid-Atlantic workshop, Recife, Ecuador, August 2012 Brazil, February 2012
  • 12. OBIS contributions to the CBD EBSA process " Biological Diversity all taxa Wider Caribbean and Western Mid-Atlantic workshop, Recife, Brazil, February 2012 Proposed site meeting EBSA criteria: Abrolhos Bank & Vitoria-Trindade Chain Described in-part due to high regional biodiversity as depicted using OBIS data.
  • 13. Species distribution modeling (aquamaps) Flathead mullet (point data)
  • 14. Species distribution modeling (aquamaps) Flathead mullet (native range)
  • 15. Species distribution modeling (aquamaps) Flathead mullet (Year 2050 range)
  • 19. Summary stats (1950-2004) # records increases steadily, until it begins to level off records around 1990 species Decline # species through the 1980s, but then an increase subsequently
  • 20. # new species recorded in OBIS 2200 2000 1800 # New Species 1600 1400 1200 1000 1950 1960 1970 1980 1990 2000 year
  • 21. Data e-infrastructure Initiative for Fisheries Management and Conservation of Marine Living Resources (i-Marine) •  Research Infrastructures CP & CSA funded by the European Commission under the FP7 Capacities Programme - eInfrastructure Unit DG CONNECT (1 Nov 2011 - 30 April 2014) •  Launch an initiative aimed at establishing and operating an e-infrastructure supporting the principles of the Ecosystem Approach to Fisheries Management and Conservation of Marine Living Resources.
  • 22. Trend Analysis and biodiversity assessments •  What are the most common species (10 - 25 or n) reported in OBIS (per taxon, region, period) and is this changing over time? •  Are we observing more or fewer species? •  Species Status: –  Species with IUCN status per MPA –  Endemic species per MPA (Nr and occurrences) –  Species with IUCN status in < n MPA –  Edge effect; MPA near species distribution extension
  • 23. The Unknown Ocean: A slice Red = many records, dark blue none Coastal areas > open waters; Surface areas > the deep sea; Vertebrates and other large animals > smaller invertebrates; Northern hemisphere > southern. The vast midwaters, Earth s largest habitat by volume, mostly unexplored (~95%) Source: CoML OBIS Webb, O Dor, Vanden Berghe
  • 24. World Ocean Assessment: First Global Integrated Marine Assessment of the Regular Process for Global Reporting and Assessment of the State of the Marine Environment, including Socioeconomic Aspects Part VI Assessment of marine biological diversity and habitats •  Section A — Overview of marine biological diversity –  Chapter 34 Scale of marine biological diversity –  Chapter 35 Extent of assessment of marine biological diversity –  Chapter 36 Overall status of major groups of species and habitats •  Section B — Marine ecosystems, species and habitats scientifically identified as threatened, declining or otherwise in need of special attention or protection –  Chapter 37 Coastal rock and biogenic habitats and related species –  Chapter 38 Coastal sediment habitats and related species –  Chapter 39 Shelf rock and biogenic reef habitats and related species –  Chapter 40 Shelf sediment habitats and related species –  Chapter 41 Deep sea habitats and related species –  Chapter 42 Water column habitats and related species •  Section C — Environmental, economic and/or social aspects of the conservation of marine species and habitats and capacity-building needs –  Chapter 43 Significant environmental, economic and/or social aspects in relation to the conservation of marine species and habitats –  Chapter 44 Capacity-building needs •  Section D — Summary on marine biological diversity –  Chapter 45 Summary on marine biological diversity
  • 25. Ocean Biogeographic Information System http://www.iobis.org/ Search data based on Taxonomy Datasets Geographical boundaries Time, season, depth Oceanographic variables
  • 26. Association of observation points with oceanography Observation data associated with Environmental attributes from World Ocean Atlas !  Bottom depth !  Temperature !  Salinity !  Nitrogen / Oxygen !  Phosphate / Silicate Visualized through interactive graphs !  Time-series graphs !  Histograms WOA09, http://www.nodc.noaa.gov/OC5/WOA09/pr_woa09.html
  • 27. OBIS allows extraction of observations based on environmental conditions Example map #1 Cetacean species observations in LME region Celtic-Biscay Shelf (no environmental conditions set) Example map #2 Cetacean species observations in LME region Celtic-Biscay Shelf filtered by a temperature range of 13 to 15 degrees
  • 28. User Statistics: 1 March 2011-2013 (Google Analytics) •  Visits: 187,906 (av. ± 400 on a regular working day) •  Unique visitors: 124,587 •  Returning visitors: 35% •  Pages/visit: 2,34 •  Mobile devices/ipad: 2%
  • 29. User Statistics Country(/(Territory( Visits( %(Visits( Country(/(Territory(%(New(Visits( 1" United"States" 47858" 25,5" 1" Hong"Kong" 95,31%" 2" Turkey" 12392" 6,6" 2" Turkey" 86,77%" 3" Canada" 10412" 5,5" 3" China" 76,04%" 4" Germany" 9948" 5,3" 4" Philippines" 74,27%" 5" United"Kingdom" 9301" 4,9" 5" (not"set)" 74,03%" 6" France" 7628" 4,1" 6" India" 73,24%" 7" Brazil" 7614" 4,1" 7" ArgenGna" 71,15%" 8" Spain" 6808" 3,6" 8" Italy" 70,52%" 9" Australia" 5556" 3,0" 9" United"States" 68,14%" 10" Mexico" 5269" 2,8" 10" Spain" 67,32%" 11" Japan" 5226" 2,8" 11" Australia" 64,69%" 12" Belgium" 3890" 2,1" 12" United"Kingdom" 61,28%" 13" Italy" 3731" 2,0" 13" Colombia" 61,00%" 14" India" 3330" 1,8" 14" Brazil" 60,84%" 15" Portugal" 3155" 1,7" 15" Netherlands" 60,70%" 16" Russia" 2637" 1,4" 16" Germany" 59,74%" 17" Chile" 2413" 1,3" 17" Japan" 56,58%" 18" (not"set)" 2118" 1,1" 18" Portugal" 54,96%" 19" Netherlands" 2005" 1,1" 19" Canada" 54,20%" 20" Colombia" 1659" 0,9" 20" France" 53,49%" 21" China" 1653" 0,9" 21" South"Korea" 53,16%" 22" Hong"Kong" 1622" 0,9" 22" Mexico" 51,47%" 23" South"Korea" 1597" 0,8" 23" Chile" 46,66%" 24" Philippines" 1364" 0,7" 24" Belgium" 45,73%" 25" ArgenGna" 1345" 0,7" 25" Russia" 44,22%"
  • 30. User Statistics City( Visits( Aydin" 3854" (not"set)" 3113" Sao"Paulo" 2272" Izmir" 2087" Oberlin" 1695" London" 1647" Sydney" 1640" Oostende" 1638" Hong"Kong" 1622" Dartmouth" 1605" Paris" 1521" Yokohama" 1484" Istanbul" 1459" Barcelona" 1458" Mexico"City" 1334" New"York" 1219" Rio"de"Janeiro" 1163" New"Brunswick" 1161" San"Francisco" 1143" Halifax" 1074" Madrid" 1049" Washington" 1026" Singapore" 1014" Lisbon" 1012" Brisbane" 985"
  • 31. Social Media •  272 members –  88% senior level, 36% research function •  148 followers –  500–1,000 readers •  74 followers
  • 32. Outreach •  PPT presentations –  100–200 views each •  OBIS Public Library –  OBIS papers classified per year, per node –  25 papers in 2012 •  Tracks OBIS publications –  >800 publications
  • 33. Papers citing OBIS (Google Scholar) 800 12 700 10 Cummulative # papers citing OBIS # papers citing OBIS per month 600 08 500 400 06 300 04 200 02 100 0 00 1998 2000 2002 2004 2006 2008 2010 2012 2014
  • 34. OBIS data growth: # records 35 million geo-referenced species observations (+ 5 million since Jan 2011) 40 35 30 25 #rrecords in millions 20 15 10 5 0 Apr-01 Sep-02 Jan-04 May-05 Oct-06 Feb-08 Jul-09 Nov-10 Apr-12 Aug-13
  • 35. OBIS data growth: # datasets 1,130 datasets (+ 219 since Jan 2011) 1200 1000 800 600 400 200 0 Apr]01" Sep]02" Jan]04" May]05" Oct]06" Feb]08" Jul]09" Nov]10" Apr]12" Aug]13"
  • 36. OBIS data growth:# records.k/dataset 180 160 140 120 100 80 60 40 20 0 Apr-01 Sep-02 Jan-04 May-05 Oct-06 Feb-08 Jul-09 Nov-10 Apr-12 Aug-13
  • 37. OBIS data growth: # marine species.k 120,000 marine species (+ 5,000 since Jan 2011) 140.00 120.00 100.00 80.00 60.00 40.00 20.00 0.00 Apr-01 Sep-02 Jan-04 May-05 Oct-06 Feb-08 Jul-09 Nov-10 Apr-12 Aug-13
  • 38. Very little historical data 1400000 1200000 1000000 #records in OBIS 800000 600000 400000 200000 0 1900 1920 1940 1960 1980 2000 2020
  • 39. OBIS Network Stakeholders OBIS is a Partnerships with CBD, GBIF, EOL, GOBI, GOOS, strategic FAO, UNEP-WCMC, ICES, SMEBD/WoRMS, Species2000, GCMD, SCOR, alliance of Users CBOL, … OBIS task hundreds of policy makers, teams scientists and managers, OBIS organisations researchers, OBIS public PO Group of who contribute Experts data, OBIS information Steering Group and expertise OBIS Nodes to OBIS. Data providers
  • 40. Six (informal) task teams 1.  Technical task team (data system architecture, and data portal) 2.  Documentation/Training task team (QC, data validation, standards and best practices) 3.  Data task team (data and metadata schemes) 4.  Governance task team (sustainability plan, governance model, vision, objectives, partnerships, funding) 5.  Taxonomy task team (name reconciliation) 6.  Outreach task team (communication strategy)
  • 41. OBIS Data System Architecture portal Queries GBIF GEO Mapping production Extraction EOL iMarine LifeWatch GCMD staging classificati on WoRMS MarineRegions ITIS, CoL, IRMNG WOD/ODP assembly indexin g GEBCO QC node node node -Excel, DiGIR, IPT -OBIS (extended DwC) schema
  • 42. Data flows in OBIS Current Future
  • 43. Draft ToR OBIS nodes •  Receiving or harvesting marine biodiversity data (and metadata) from national, regional and international programs, and the scientific community at large. •  Perform data validation (using standards, tools and best practices), as described in the OBIS cookbook (OBIS tier II). •  Reporting the results of quality control directly to data collectors/ originator. •  Making data (and metadata) available to OBIS using agreed upon standards and formats (OBIS cookbook). •  Control data access, terms of use and sharing policies. •  Provide customer support (data queries, analyses, feedback). •  Increase visibility and reach out (Communication and Outreach Strategy). •  Build customized portals (e.g., multiple languages). •  Comply with the IOC data policy for using and sharing OBIS data.
  • 44. OBIS nodes (bold = NODC status, green = Candidate node) 1.  Antarctica/ AntOBIS 12. Mediterranean/ 18. Global/ MicrOBIS 2.  Arctic/ ArcOD/AOOS MedOBIS 19. Global/ OBIS- 3.  Argentina/ArOBIS 13. South-East Pacific/ SEAMAP 4.  Australia/ OBIS- ESPOBIS 20. Global/ Hexacorals Australia 14. South-West Atlantic/ 21. Global/ FishBase 5.  Black Sea/ BlackSea- WSAOBIS 22. Global/ Seamounts OBIS 15. South-West Pacific/ 23. Gulf of Aden 6.  Canada/ OBIS- NZOBIS 24. South-East Asia Canada 16. Sub-Saharan/ 25. Caribbean 7.  China/ OBIS-China AfrOBIS 8.  Europe/ EurOBIS 17. USA/ OBIS-USA 9.  India/ IndOBIS 10. Japan/ OBIS-Japan 11. Korea/ KOBIS
  • 45. Establishment of new OBIS nodes (for consideration at IODE-XXII) •  If the institute is an existing NODC: –  Send a letter of “expression of interest” to the OBIS project office, wishing to join the OBIS network of nodes. •  If the institute is not an existing NODC, but wishes to apply for an NODC status: –  Follow the procedure for NODCs and include your wish to join the OBIS network of nodes. •  If the institute is an existing SODC (if the SODC entity type is adopted by the 22nd session of the IODE Committee): –  Send a letter of “expression of interest” to the OBIS project office, wishing to join the OBIS network. •  If the institute is not an existing SODC, but wishes to apply for an SODC status: –  Follow the procedure for SODCs and include your wish to join the OBIS network of nodes.
  • 46. Establishment of new OBIS nodes (for consideration at IODE-XXII) The extra information required for OBIS to include in the application/ expression of interest is the following: –  Indicate the level of commitment to function as an OBIS tier II and/ or tier III node; –  Indicate the person who will act as the OBIS node manager (and deputy). Applications will be reviewed by the IODE Steering Group for OBIS and a decision will be made within two weeks after confirmation of receipt. The results of the decision from the 22nd session of the IODE Committee will affect the final process developed by the SG-OBIS.
  • 47. OBIS Standards and Best Practices •  Metadata, no single standard –  ISO19115 compliancy (GCMD, FGCD, IMIS, EML..) •  Data –  Geography: OBIS extension of Darwin Core –  Taxonomy: basis = World Register of Marine Species, but also ITIS, CoL and IRMNG (when not in WoRMS). •  Data harvesting protocols –  GBIFs Integrated Publishing Toolkit (IPT) (txt file + EML) –  DiGIR (XML) –  CSV •  Data publishing services –  Maps using Open layers –  OGC/Open GIS web map/feature/coverage services (OBIS GeoServer)
  • 48. QC/data validation/quality flags •  Principle OBIS never change records –  data cleaning needs to be done at the expert/data providers level. •  OBIS can perform data integrity checks (completeness, correctness), add precision and accuracy information (quality flags)
  • 49. QC of metadata •  Metadata"should"contain:" –  Title"(dataset"name,"comprehensive,"not"just"an"acronym)" –  CitaGon"(journal"style,"include"Gtle"of"dataset)" –  General"descripGon"(abstract)" –  Contact"informaGon"(name"–"insGtute"–"email)" –  User"restricGons"(most%cases:% freely%available%if%cited )" –  Sampling"design"(collaborate"with"GE]BICH"and"ODSBP)" •  Metadata"can"also"contain:" –  Keywords,"habitat,"species"funcGonal"groups" –  Taxonomic"–"temporal"–"geographic"scope/boundaries" –  Links"(online%data,%metadata,%project%page,%DiGIR,%IPT%…)" –  Associated"documentaGon"(e.g.,%reports,%publica@ons%…)"
  • 50. QC of data •  Required"(mandatory)"fields" •  Taxonomy" •  Life"stage"(need"for"vocab"]>"GE]BICH/ODSBP)" •  Gender"(need"for"vocab"]>"GE]BICH/ODSBP)" •  Geographic"locaGons"(link"to"gazeheer)" •  Depth" •  Date"–"Gme" –  Start"&"end"fields" •  Observed"individuals" •  Basis"of"record"(literature,"specimen,"observaGon)"
  • 51. Taxonomic QC •  Taxon Match tool to check if name is available in WoRMS, ITIS, IRMNG, CoL (if name not available in any of those -> more elaborate search in: PaleoDB, IPNI, Euro+Med Plantbase, Index Fungorum, Fishbase, BOLD, Web of Science •  Avoid false matches (homonyms) by indicating higher taxonomic group •  Translate common names and cases of cf., sp., complexes etc to higher taxonomic level: Received taxon name Matching name Mytiluus sp. Mytilus Gadus cfr. morhua Gadus Cladocera/Ostracoda Crustacea (= common subphylum) Sponges Porifera Bamboo sharks Galeomorphi (superorder) •  Add taxon LSID to record (e.g. TSN, AphiaID)
  • 52. Name validation tool: Taxon Match This(tool(uses(the(following(components:( :TAXAMATCH(fuzzy(matching(algorithm(by(Tony(Rees( :PHP/MySql(port(of(TAXAMATCH(by(Michael(Giddens( :ScienHfic(Names(Parser(by(Dmitry(Mozzherin(
  • 57. Web Services System( Field( Key( Mechanism( WoRMS" Taxon"name" AphiaID" webservice" WoRMS" Parent"taxon" AphiaID" webservice" WoRMS" Child"taxa" AphiaID" webservice" WoRMS" Synonyms" AphiaID" webservice" WoRMS" Common"name" AphiaID" webservice" WoRMS" References" AphiaID" webservice" WoRMS" Ahributes" AphiaID" Not"yet"
  • 58. Taxonomic QC •  Current"situaGon" "" "±"198,000"taxon"names"in"OBIS:" –  ±"153,500"matched"to"WoRMS"" Overlap"of"±"72"000"taxa" –  ±"80,000"matched"to"ITIS" –  ±"31,500"not"matched"to"any"standard"(WoRMS,"ITIS,"CoL,"IRMNG)" •  Plan OBIS Taxonomic Task Team –  April 2013: Status report on numbers of errors (per taxonomic groups and time) –  June 2013: Preliminary Cleaning Assessment –  Cleaning up residual errors – Ongoing
  • 59. Geographic QC •  Fields in OBIS 1.  LaHtude( 2.  Longitude( 3.  Start"laGtude" 4.  End"laGtude" 5.  Start"longitude" 6.  End"longitude" 7.  Coordinate"precision" 8.  Start/end"coordinate"precision" 9.  Bounding"box" 10. ConGnent"ocean" 11. Country" 12. State"province" 13. County" 14. Locality"
  • 60. Geographic QC •  Are"the""laGtude"and"the"longitude"completed"and"are"their"values"different" from"0?" •  Are"the"laGtude"or"the"longitude"completed"and"are"their"decimal"values" between"]90"and"+90"(laGtude)"and"between"]180"and"+180"(longitude)" (WGS84)?" •  Decimal"check"(X,aabb":"if"aa"<59"and"bb"<59"it"may"mean"the"coordinates"are" not"decimals,"but"degrees,"minutes"and"seconds)""" •  Are"the"coordinates"situated"in"sea"or"coast"(buffer"20km)?" •  Are"the"coordinates"situated"in"the"right"geographical"area"(fields"9]14,"or"" e.g."AtlanGc"spohed"dolphins"should"not"be"found"in"the"Pacific)?" •  Is"the"observaGon"point"not"an"outlier"in"the"dataset?"" –  Is"the"observaGon"point"not"more"than"4"X"standard"deviaGon"from"the"centroid"of"the" dataset?" •  Is"the"observaGon"point"not"an"outlier"in"the"observaGons"of"the"species?"" –  Is"the"observaGon"point"not"more"than"4"X"standard"deviaGon"from"the"centroid"of"the" observaGons"from"that"species?
  • 61. Geographic QC Example%dataset%“Marine%Turtles”:% sigh@ngs%and%strandings%of%marine%turtles%around%the%coast%of%UK%and%Ireland”" Outliers%due%to%missing%of%minus%sign.%Correc@ons%made%aKer%consulta@on%data%provider."
  • 62. Geographic QC •  Related to depth: –  Is the minimum depth < maximum depth? –  Is the observation depth possible if compared with a depth map (include margin)? –  Is the observation depth possible if compared with the given depth range of the species •  Related to environmental parameters: –  Is the observation possible if compared with the given (min- max) salinity, temperature, oxygen, nutrient range of the species
  • 63. QC Presence, abundance, biomass •  Is the field 'sample size' completed if the value of the field 'Observed individual count’ or 'observed weight' >0?
  • 64. Date QC •  Fields in OBIS 1.  YearCollected 2.  MonthCollected 3.  DayCollected 4.  StartYearCollected 5.  StartMonthCollected 6.  StartDayCollected 7.  EndYearCollected 8.  EndMonthCollected 9.  EndDayCollected 10.  StartTimeOfDay 11.  EndTimeOfDay 12.  TimeOfDay 13.  Timezone
  • 65. Date QC •  Is the collection date (year, month, day, end-start) completed and valid (i.e. between 1300 and now)? •  Is the ‘collection date’ <= the ‘date identified’ and <= the ‘last modified date’ •  If the start date and the end date are completed, is the start date < the end date (taking into consideration the given time)? •  Is the time/starttime/endtime >= 0 and <24 and is the timezone completed
  • 66. Date QC =>produce time graph for visual check.
  • 67. Future plans •  Expand on data types (marine extension of Darwin Core) –  Tracking data –  Acoustics –  Images (e.g. fin patterns) •  Expand geographical coverage •  Capacity building –  Biological data management –  Regional marine biological observatories •  Close collaboration with IODE projects and IOC and UNESCO programmes