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GENE MUTATIONS

aka point mutations
Gene mutations which affect
   only one gene

                                         DNA sequence
                           Transcription       ↓
                                         mRNA sequence
                            Translation        ↓
                                          Polypeptide


© 2010 Paul Billiet ODWS
Normal gene
            DNA (antisense strand)         GGTCTCCTCACGCCA
                                                     ↓
                               mRNA       CCAGAGGAGUGCGGU
                                                 Codons
                                                     ↓
                           Polypeptide      Pro-Glu-Glu-Cys-Gly
                                               Amino acids
        The antisense strand is the DNA strand which acts as
        the template for mRNA transcription
© 2010 Paul Billiet ODWS
Mutations: Substitutions
   Normal gene                                Substitution mutation
     GGTCTCCTCACGCCA                            GGTCACCTCACGCCA
               ↓                                           ↓
    CCAGAGGAGUGCGGU                            CCAGUGGAGUGCGGU
           Codons
               ↓                                             ↓
      Pro-Glu-Glu-Cys-Gly                           Pro-Arg-Glu-Cys-Gly
         Amino acids
   Substitutions will only affect a single codon
   Their effects may not be serious unless they affect an amino acid that is
   essential for the structure and function of the finished protein molecule (e.g.
   sickle cell anaemia)
© 2010 Paul Billiet ODWS
The genetic code is degenerate

   A mutation to have no effect on the phenotype
   Changes in the third base of a codon often have
   no effect.




© 2010 Paul Billiet ODWS
No change
   Normal gene              Substitution mutation
     GGTCTCCTCACGCCA          GGTCTTCTCACGCCA
               ↓                         ↓
    CCAGAGGAGUGCGGU           CCAGAAGAGUGCGGU
           Codons
               ↓                        ↓
      Pro-Glu-Glu-Cys-Gly      Pro-Glu-Glu-Cys-Gly
         Amino acids




© 2010 Paul Billiet ODWS
Disaster
   Normal gene              Substitution mutation
     GGTCTCCTCACGCCA          GGTCTCCTCACTCCA
               ↓                         ↓
    CCAGAGGAGUGCGGU           CCAGAAGAGUGAGGU
           Codons
               ↓                        ↓
      Pro-Glu-Glu-Cys-Gly       Pro-Glu-Glu-STOP
         Amino acids




© 2010 Paul Billiet ODWS
Mutations: Inversion
   Inversion mutations, also, only affect a small part of the
   gene
   Normal gene                     Inversion mutation
     GGTCTCCTCACGCCA                 GGTCCTCTCACGCCA
               ↓                               ↓
    CCAGAGGAGUGCGGU                  CCAGGAGAGUGCGGU
           Codons
               ↓                                ↓
      Pro-Glu-Glu-Cys-Gly              Pro-Gly-Glu-Cys-Gly
         Amino acids

© 2010 Paul Billiet ODWS
Mutations: Additions
    A frame shift mutation


   Normal gene               Addition mutation
     GGTCTCCTCACGCCA          GGTGCTCCTCACGCCA
               ↓                         ↓
    CCAGAGGAGUGCGGU          CCACGAGGAGUGCGGU
           Codons
               ↓                        ↓
      Pro-Glu-Glu-Cys-Gly      Pro-Arg-Gly-Val-Arg
         Amino acids

© 2010 Paul Billiet ODWS
Mutations: Deletions
    A frame shift mutation
   Normal gene               Deletion mutation
     GGTCTCCTCACGCCA           GGTC/CCTCACGCCA
               ↓                         ↓
    CCAGAGGAGUGCGGU           CCAGGGAGUGCGGU
           Codons
               ↓                        ↓
      Pro-Glu-Glu-Cys-Gly      Pro-Gly-Ser-Ala-Val
         Amino acids

© 2010 Paul Billiet ODWS
Mutations of haemoglobin
      Haemoglobin is a tetramer = 2 α and 2 β-chains
      The genes for these polypeptides are found on
       different chromosomes
      The β-chain gene is found on chromosome 11
      The α-chain gene is found on chromosome 16
      The nucleotide sequences have been worked
       out
      Several inherited diseases occur on the β-chain,
       which contains 146 amino acids.
© 2010 Paul Billiet ODWS
β haemoglobin sense strand
   cDNA sequence
    cDNA (complementary DNA) is obtained
     by back-transcribing the mRNA used to
     translate the polypeptide
    So cDNA has no introns
    This is done using reverse transcriptase
     enzyme.


© 2010 Paul Billiet ODWS
Methionine initiator

      ATG GTG CAT CTG ACT CCT GAG GAG AAG TCT GCC
      GTT ACT GCC CTG TGG GGC AAG GTG AAC GTG GAT
      GAA GTT GGT GGT GAG GCC CTG GGC AGG CTG CTG
      GTG GTC TAC CCT TGG ACC CAG AGG TTC TTT GAG
      TCC TTT GGG GAT CTG TCC ACT CCT GAT GCT GTT
      ATG GGC AAC CCT AAG GTG AAG GCT CAT GGC AAG
      AAA GTG CTC GGT GCC TTT AGT GAT GGC CTG GCT
      CAC CTG GAC AAC CTC AAG GGC ACC TTT GCC ACA
      CTG AGT GAG CTG CAC TGT GAC AAG CTG CAC GTG
      GAT CCT GAG AAC TTC AGG CTC CTG GGC AAC GTG
      CTG GTC TGT GTG CTG GCC CAT CAC TTT GGC AAA
      GAA TTC ACC CCA CCA GTG CAG GCT GCC TAT CAG
      AAA GTG GTG GCT GGT GTG GCT AAT GCC CTG GCC
      CAC AAG TAT CAC TAA
                                Nonsense terminator
© 2010 Paul Billiet ODWS
Mutation           Codon Change to DNA    Change in
                                  sense strand   Amino Acid
        S (sickle cell       6    GAG to GTG     Glu to Val
           anaemia)
        C (cooley’s          6    GAG to AAG     Glu to Lys
           syndrome)
        GSan Jose            7    GAG to GGG     Glu to Gly
        E                   26    GAG to AAG     Glu to Lys
        MSaskatoon          63     CAT to TAT    His to Tyr
        MMilwauki           67    GTG to GAG     Val to Glu
        OArabia             121   GAA to GTA     Glu to Val

© 2010 Paul Billiet ODWS
Sickle Cell Anaemia




                                                     Sickle cell anemia
                                                     Image Credit: http://explore.ecb.org/




Blood smear (normal)
Image Credit: http://lifesci.rutgers.edu/~babiarz/

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GENE MUTATIONS: POINT MUTATIONS AND THEIR EFFECTS

  • 2. Gene mutations which affect only one gene DNA sequence Transcription ↓ mRNA sequence Translation ↓ Polypeptide © 2010 Paul Billiet ODWS
  • 3. Normal gene DNA (antisense strand) GGTCTCCTCACGCCA ↓ mRNA CCAGAGGAGUGCGGU Codons ↓ Polypeptide Pro-Glu-Glu-Cys-Gly Amino acids The antisense strand is the DNA strand which acts as the template for mRNA transcription © 2010 Paul Billiet ODWS
  • 4. Mutations: Substitutions Normal gene Substitution mutation GGTCTCCTCACGCCA GGTCACCTCACGCCA ↓ ↓ CCAGAGGAGUGCGGU CCAGUGGAGUGCGGU Codons ↓ ↓ Pro-Glu-Glu-Cys-Gly Pro-Arg-Glu-Cys-Gly Amino acids Substitutions will only affect a single codon Their effects may not be serious unless they affect an amino acid that is essential for the structure and function of the finished protein molecule (e.g. sickle cell anaemia) © 2010 Paul Billiet ODWS
  • 5. The genetic code is degenerate A mutation to have no effect on the phenotype Changes in the third base of a codon often have no effect. © 2010 Paul Billiet ODWS
  • 6. No change Normal gene Substitution mutation GGTCTCCTCACGCCA GGTCTTCTCACGCCA ↓ ↓ CCAGAGGAGUGCGGU CCAGAAGAGUGCGGU Codons ↓ ↓ Pro-Glu-Glu-Cys-Gly Pro-Glu-Glu-Cys-Gly Amino acids © 2010 Paul Billiet ODWS
  • 7. Disaster Normal gene Substitution mutation GGTCTCCTCACGCCA GGTCTCCTCACTCCA ↓ ↓ CCAGAGGAGUGCGGU CCAGAAGAGUGAGGU Codons ↓ ↓ Pro-Glu-Glu-Cys-Gly Pro-Glu-Glu-STOP Amino acids © 2010 Paul Billiet ODWS
  • 8. Mutations: Inversion Inversion mutations, also, only affect a small part of the gene Normal gene Inversion mutation GGTCTCCTCACGCCA GGTCCTCTCACGCCA ↓ ↓ CCAGAGGAGUGCGGU CCAGGAGAGUGCGGU Codons ↓ ↓ Pro-Glu-Glu-Cys-Gly Pro-Gly-Glu-Cys-Gly Amino acids © 2010 Paul Billiet ODWS
  • 9. Mutations: Additions A frame shift mutation Normal gene Addition mutation GGTCTCCTCACGCCA GGTGCTCCTCACGCCA ↓ ↓ CCAGAGGAGUGCGGU CCACGAGGAGUGCGGU Codons ↓ ↓ Pro-Glu-Glu-Cys-Gly Pro-Arg-Gly-Val-Arg Amino acids © 2010 Paul Billiet ODWS
  • 10. Mutations: Deletions A frame shift mutation Normal gene Deletion mutation GGTCTCCTCACGCCA GGTC/CCTCACGCCA ↓ ↓ CCAGAGGAGUGCGGU CCAGGGAGUGCGGU Codons ↓ ↓ Pro-Glu-Glu-Cys-Gly Pro-Gly-Ser-Ala-Val Amino acids © 2010 Paul Billiet ODWS
  • 11. Mutations of haemoglobin  Haemoglobin is a tetramer = 2 α and 2 β-chains  The genes for these polypeptides are found on different chromosomes  The β-chain gene is found on chromosome 11  The α-chain gene is found on chromosome 16  The nucleotide sequences have been worked out  Several inherited diseases occur on the β-chain, which contains 146 amino acids. © 2010 Paul Billiet ODWS
  • 12. β haemoglobin sense strand cDNA sequence  cDNA (complementary DNA) is obtained by back-transcribing the mRNA used to translate the polypeptide  So cDNA has no introns  This is done using reverse transcriptase enzyme. © 2010 Paul Billiet ODWS
  • 13. Methionine initiator ATG GTG CAT CTG ACT CCT GAG GAG AAG TCT GCC GTT ACT GCC CTG TGG GGC AAG GTG AAC GTG GAT GAA GTT GGT GGT GAG GCC CTG GGC AGG CTG CTG GTG GTC TAC CCT TGG ACC CAG AGG TTC TTT GAG TCC TTT GGG GAT CTG TCC ACT CCT GAT GCT GTT ATG GGC AAC CCT AAG GTG AAG GCT CAT GGC AAG AAA GTG CTC GGT GCC TTT AGT GAT GGC CTG GCT CAC CTG GAC AAC CTC AAG GGC ACC TTT GCC ACA CTG AGT GAG CTG CAC TGT GAC AAG CTG CAC GTG GAT CCT GAG AAC TTC AGG CTC CTG GGC AAC GTG CTG GTC TGT GTG CTG GCC CAT CAC TTT GGC AAA GAA TTC ACC CCA CCA GTG CAG GCT GCC TAT CAG AAA GTG GTG GCT GGT GTG GCT AAT GCC CTG GCC CAC AAG TAT CAC TAA Nonsense terminator © 2010 Paul Billiet ODWS
  • 14. Mutation Codon Change to DNA Change in sense strand Amino Acid S (sickle cell 6 GAG to GTG Glu to Val anaemia) C (cooley’s 6 GAG to AAG Glu to Lys syndrome) GSan Jose 7 GAG to GGG Glu to Gly E 26 GAG to AAG Glu to Lys MSaskatoon 63 CAT to TAT His to Tyr MMilwauki 67 GTG to GAG Val to Glu OArabia 121 GAA to GTA Glu to Val © 2010 Paul Billiet ODWS
  • 15. Sickle Cell Anaemia Sickle cell anemia Image Credit: http://explore.ecb.org/ Blood smear (normal) Image Credit: http://lifesci.rutgers.edu/~babiarz/