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Geo-Information in animal
 disease outbreak management
  Esri European User Conference, October 2011, Madrid


Henk Janssen, Igor Staritsky and Bas Vanmeulebrouk (Alterra, Wageningen-
UR)
Arco van der Spek, Paul Leijs, Dennis Kok (Food and Consumer Product Safety
Authority, Ministry of EL&I)
Presentation setup




 The Dutch situation
 Dutch pilots of GIS in animal disease crisis
 management
 Future developments?
The Netherlands             Slovenia
                            SEPTEMBE
  41.160 Km2                R 2007
                              320 km
  >16 million inhabitants


  4 million cattle
                                   180 km
  12 million pigs
  100 million poultry




                                  3
Pig density   Poultry density
Large Outbreaks in NL in recent years

 1997: Classic Swine Fever (+/- 8 million animals)
 2001: Foot and Mouth disease (200.000 animals
 eradicated)
 2003: Avian Influenza (31,6 million birds
 eradicated, 30% of the population)
 Blue tongue (sheep)
 Q-fever (goats)
Research questions of nVWA
(Food and Consumer Product Safety Authority in NL)


  nVWA needs to maintain quarantine areas
  nVWA needs timely, correct and complete farm and area
  information in case of contagious animal disease outbreak
  nVWA desires online (internet-based) GIS-applications as
  integrated part of their workflow
  Research question: can we prepare adequate datasets
  and software tools to meet the demands?
Workflow during disease crisis situations
     Farm -> suspicious                                  Specialists team (Animal Health
     symptoms                                            Service and VWA)
     -Veterinarian or other                 within 3 h   - Clinical inspection
     source
                                                         - Sampling
                                                         - Filing
                      Letter of suspicion
                                                         - Declaration of suspicion


                                                                             Positive testing


ACCUTE INFORMATION DEMAND                                ACTION !
- location of farms                                      - Surveillance zone (10km)
- location and number of animals                         - Protection zone (3 km)
- geographic relations                                   - Culling of infected holding + 1
                                                         km zone
Our approach



 Data: testing of coupling/quality of available
 datasets
 Software tools: The proof of the pudding…
 Process: embedding geo-information in workflow
Coupling of parcels and farm locations

Combination            % parcels   % grassland

UBN - BRS                 64           79

Postal code house nr      32           18

LPIS – Annual Census      3              2

No coupling               1              1
Visualize
data
quality




Light green =
arable crops
Pilot (web-)GIS-applications for use in contagious
           animal disease crises in NL


PIKET (English: Picket      but also Picket Officer )
   Application for geographical determination and textual description of
   quarantine areas (Surveillance zone + Protection zone)
GEMMA (Geographic Event Management and Monitoring
Application)
   Data-selection tool, based on information from Dutch LPIS (‘BRP’), I&R,
   GIAB (farm location (x,y on shed level)
   Internet based
   Time line
Protection and Observation areas
  Avian Influenza

                                           Observation
                                           area
compartment
  Bufferzone
  Bufferzone




                              10 km
                              T-area
                     3 km                   Protection
                     B-area
                                            area

                                       Culling area (1km)
                                       Vaccination area
First step: PIKET: describe quarantine area
Suspicion site (roads, rail, water way)
Suspicion site (only roads)
Suspicion site (roads, etc. + junctions)
Suspicion site (barricaded junctions)
Suspicion site (‘stops’ around zone)
Suspicion site (route around zone)
Suspicion site (description of route)
Suspicion site (with aerial photo)
GEMMA: Use of different map layers
                                                  Active layers
                                             selectable by placing
                                             a ‘tick’, the ‘i’ makes
                                              the data of the geo-
                                             objects ‘identifiable’




 Identify to show
      details


                          Map layers are
                       served using ArcIMS
                              (ESRI)
Creation of a new suspicion


                                                                  New suspicion by
                                                                      selecting a
                                                                 agricultural holding



Pan and zoom in the
  map (standard
   functionality)      New suspicion by
                      selecting a location
                          on the map




                                               Circles with
                                             adjustable radius
Selection and presentation of farms
                                                                  Foot and Mouth-
                                                                     suspicion




 Initial suspician
                     Different sub-selects
                      (based on defined
                            circles)




                                             Farm with parcels
                                             within the circles
Interactive drawing of boundaries
                        Digitizing tools
                                                  Time line tool




                               Second suspicion
Digitized area with a
        name
Presentation of the timeline of suspicions




‘Free’ holdings in
      green




                                         Timeline selector

    ‘Free’ holding
 restricted by second
       suspicion
Details of a holding
                             Inspection tool (for
                             details of the farm)




                                                    Data from I&R and
                                                     Annual Census




                                                           Parcels of the
                                                          selected holding


Holding 221449 in
  Google Maps




    Holding 221449
Reports

                 A printable map
                      (PDF)




                                   All holdings in
                                       Excell




Holding 221449
Process support in crisis simulation/training
Support of crisis simulation/training
Support of crisis simulation/training
Concluding remarks



 nVWA/EL&I have the data
 Work flow can be supported using geo
 information/GIS
 Need for synchronizing developments
 Next step is operational integration of data, tools
 and end user process

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Geo-Information in Animal Disease Outbreak Management

  • 1. Geo-Information in animal disease outbreak management Esri European User Conference, October 2011, Madrid Henk Janssen, Igor Staritsky and Bas Vanmeulebrouk (Alterra, Wageningen- UR) Arco van der Spek, Paul Leijs, Dennis Kok (Food and Consumer Product Safety Authority, Ministry of EL&I)
  • 2. Presentation setup The Dutch situation Dutch pilots of GIS in animal disease crisis management Future developments?
  • 3. The Netherlands Slovenia SEPTEMBE 41.160 Km2 R 2007 320 km >16 million inhabitants 4 million cattle 180 km 12 million pigs 100 million poultry 3
  • 4. Pig density Poultry density
  • 5. Large Outbreaks in NL in recent years 1997: Classic Swine Fever (+/- 8 million animals) 2001: Foot and Mouth disease (200.000 animals eradicated) 2003: Avian Influenza (31,6 million birds eradicated, 30% of the population) Blue tongue (sheep) Q-fever (goats)
  • 6. Research questions of nVWA (Food and Consumer Product Safety Authority in NL) nVWA needs to maintain quarantine areas nVWA needs timely, correct and complete farm and area information in case of contagious animal disease outbreak nVWA desires online (internet-based) GIS-applications as integrated part of their workflow Research question: can we prepare adequate datasets and software tools to meet the demands?
  • 7. Workflow during disease crisis situations Farm -> suspicious Specialists team (Animal Health symptoms Service and VWA) -Veterinarian or other within 3 h - Clinical inspection source - Sampling - Filing Letter of suspicion - Declaration of suspicion Positive testing ACCUTE INFORMATION DEMAND ACTION ! - location of farms - Surveillance zone (10km) - location and number of animals - Protection zone (3 km) - geographic relations - Culling of infected holding + 1 km zone
  • 8. Our approach Data: testing of coupling/quality of available datasets Software tools: The proof of the pudding… Process: embedding geo-information in workflow
  • 9. Coupling of parcels and farm locations Combination % parcels % grassland UBN - BRS 64 79 Postal code house nr 32 18 LPIS – Annual Census 3 2 No coupling 1 1
  • 11. Pilot (web-)GIS-applications for use in contagious animal disease crises in NL PIKET (English: Picket but also Picket Officer ) Application for geographical determination and textual description of quarantine areas (Surveillance zone + Protection zone) GEMMA (Geographic Event Management and Monitoring Application) Data-selection tool, based on information from Dutch LPIS (‘BRP’), I&R, GIAB (farm location (x,y on shed level) Internet based Time line
  • 12. Protection and Observation areas Avian Influenza Observation area compartment Bufferzone Bufferzone 10 km T-area 3 km Protection B-area area Culling area (1km) Vaccination area
  • 13. First step: PIKET: describe quarantine area
  • 14. Suspicion site (roads, rail, water way)
  • 16. Suspicion site (roads, etc. + junctions)
  • 19. Suspicion site (route around zone)
  • 21. Suspicion site (with aerial photo)
  • 22. GEMMA: Use of different map layers Active layers selectable by placing a ‘tick’, the ‘i’ makes the data of the geo- objects ‘identifiable’ Identify to show details Map layers are served using ArcIMS (ESRI)
  • 23. Creation of a new suspicion New suspicion by selecting a agricultural holding Pan and zoom in the map (standard functionality) New suspicion by selecting a location on the map Circles with adjustable radius
  • 24. Selection and presentation of farms Foot and Mouth- suspicion Initial suspician Different sub-selects (based on defined circles) Farm with parcels within the circles
  • 25. Interactive drawing of boundaries Digitizing tools Time line tool Second suspicion Digitized area with a name
  • 26. Presentation of the timeline of suspicions ‘Free’ holdings in green Timeline selector ‘Free’ holding restricted by second suspicion
  • 27. Details of a holding Inspection tool (for details of the farm) Data from I&R and Annual Census Parcels of the selected holding Holding 221449 in Google Maps Holding 221449
  • 28. Reports A printable map (PDF) All holdings in Excell Holding 221449
  • 29. Process support in crisis simulation/training
  • 30. Support of crisis simulation/training
  • 31. Support of crisis simulation/training
  • 32. Concluding remarks nVWA/EL&I have the data Work flow can be supported using geo information/GIS Need for synchronizing developments Next step is operational integration of data, tools and end user process