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Differentiation in the fertility of Inceptisols as related to land use in the upper 
                                               Solimões river region, western Amazon*
                            Fatima Maria de Souza Moreira, Rafaela Simão Abrahão Nóbrega, Ederson da Conceição Jesus,
                                                    Daniel Furtado Ferreira, Daniel Vidal Pérez
                                                                         *Funded by GEF-UNEP, Implemented by TSBF-CIAT




                               INTRODUCTION                                                                 MATERIALS AND METHODS
  The Upper Solimões river region, western Amazon, is the homeland of                In March 2004, 98 composite soil samples had been collected in six windows,
  indigenous populations and contains small‐scale agricultural systems that          of three different locations: windows 1‐2, in Guanabara II; 3‐5, in Nova Aliança;
  are important for biodiversity conservation. Although traditional slash            6, near the town of Benjamin Constant. The sampling comprised six major land
  and‐burn agriculture is being practiced over many years, deforestation             use systems (LUS). Sampling points (SP) in all windows were distributed in the
  there is relatively small compared to other Amazon regions. Pastures are           LUS as follows: 30 in Young Secondary Forest, (YSF) 10 in Old Secondary Forest
  restricted to the vicinity of cities and do not spread to the small c com‐         (OSF), 17 in Rain Forest (RF), 13 in Pasture (PA), 18 in Agricultures (AGRI) and
  munities along the river. Inceptisols are the main soil order (>90%) in the        10 in groforestry (AGRO). Spatially, the sampling points were distributed in a
  area and have unique attributes including high Al content and high cation          grid with quadrants of 100 x 100 m. Soil samples were collected in the top
  exchange capacity (CEC) due to the enrichment of the clay fraction with            layer (0‐20 cm). From each composite sample, a sub‐sample was removed, air
  2:1 secondary aluminosilicates. Despite its importance, few studies have           dried and passed through a 2 mm mesh sieve, and then submitted to analysis.
  focused on this soil order when considering land use effects on the fertility      Plant‐available P was extracted by Mehlich 1 (HCl 0.05 mol L−1+H2SO4 0.0125
  of Amazon soils.                                                                   mol L−1) and analyzed by spectrophotometry at 660 nm. Soil pH was
                                                                                     measured in a 1:2.5 soil:water suspension. Exchangeable Al, Ca and Mg were
                                  OBJECTIVE                                          extracted with KCl 1 mol L−1. Ca and Mg were determined by atomic
   Thus, the objective of this study was to evaluate changes in soil fertility of    absorption pectrometry and Al by acid‐base titration. Exchangeable Na and K
   representative land use systems (LUSs) in the Upper Solimões region,              were extracted with Mehlich 1 and determined by photometry. Potential
   namely: primary rainforest, old secondary forest, young secondary forest,         acidity (H+Al) was estimated by an equation based on the pH determined in
   agroforestry, pasture and agriculture.                                            SMP buffer solution (pH SMP). Organic carbon was determined by oxidation
                                                                                     with dichromate and total N by Kjeldahl. Available micronutrients (Fe, Mn, Zn,
                                   RESULTS                                           and Cu) were extracted by Mehlich 1 and determined by atomic absorption
                                                                                     spectrometry. Boron was extracted with hot water and determined by
                                                                                     spectrophotometry with azomethine‐H at 420 nm. Sulfate was extracted with
                                                                                     Ca(H2PO4)2 0.01 mol L−1 and determined by spectrophotometry at 420 nm.




       Dendrogram based on Mahalanobis Linkage distance  considering 
                                                                                             Biplot of 98 soil samples distributed in 6 windows and comprising 6 land
       22 soil chemical and physical variates among land use systems.
                                                                                             use systems in the Western Brazilian Amazon, against values for the first
                                                                                             two principal components, PC1 and PC2, for soil chemical and physical
                                   CONCLUSIONS                                               attributes. Vectors represent edaphic variables that have a high loading
                                                                                             on PC1 and PC2 and that are significant correlated with the ordination
LUSs were significantly differentiated by the chemical attributes of their topsoil (0–20
                                                                                             axes (P<0.05). Each vector points to the direction of increase for a given
cm). Secondary forests presented soil chemical attributes more similar to primary
                                                                                             variable and its length indicates the strength of the correlation between
rainforest areas, while pastures exhibited the highest dissimilarity from all the other
                                                                                             the variable and the ordination scores. Ellipses were arbitrarily added in
LUSs. As a whole, soil chemical changes among Inceptisols dominated LUSs showed
                                                                                             order to help in interpretation and their color refer to the main land use
patterns that were distinct from those reported from other Amazon soils like Oxisols
                                                                                             system included.
and Ultisols. This is probably related to the presence of high‐activity clays enriched in
exchangeable aluminum that heavily influenced the soil chemical reactions over the
expected importance of organic matter found in most studies conducted over Oxisol
                                                                                                                         ACKNOWLEDGMENTS
and Ultisol.
                                                                                                The authors aknowledge BiosBrasil Technicians Elson Gomes de Souza and Andson Abreu
                                                                                                Magalhães, and the people of the Communities of Nova Aliança and Guanabara 2, for
Science of the Total Environment 408 (2009) 349–355                                             their major contribution during field work.
Phylogenetic relationships among strains isolated from siratro nodules after inoculation of soil samples from diverse land use systems under axenic conditions, based on 16S rDNA sequences and related sequences of β-Proteobacteria. Phylogenies were estimated by the neighbour-joining method. Size of alignment was 537 bp, and gaps were omitted. Bootstrap values were based on 2,000 trials.




                                                                                                  Nitrogen‐fixing bacteria communities occurring in soils under different uses
                                                                                                  In the Western Amazon region as indicated by nodulation of siratro
                                                                                                  (Macroptilium atropurpureum)*
                                                                                                    Adriana Silva Lima ,  Rafaela Simão Abrahão Nóbrega,  Alexandre Barberi , 
                                                                                                    Krisle da Silva,  Daniel Furtado Ferreira , Fatima Maria de Souza Moreira
                                                                                                                                                                                         *Funded  by GEF‐UNEP, Implemented  by TSBF‐CIAT




                                                                                                                       INTRODUCTION                                                                                                                                                                                                          MATERIALS AND METHODS

                                       Understanding native communities is a crucial step for the management of
                                       biological nitrogen fixation, since they may be either a source of efficient
                                       strains or a limiting factor when efficient strains need to be introduced.


                                                                                                                           OBJECTIVE                                                                                                                                                                                                                                                                   Sampling point (SP) geo-referenced
                                                                                                                                                                                                                                                                                                                                                                                                       Sub-sample points around SP

                                        This work aimed to evaluate the density, diversity and efficiency of
                                        Leguminosae nodulating bacterial (LNB) communities and their component
                                        strains in soils under various land use systems (LUSs): pristine forest,                                                                                                                                                                   a Location of Benjamin Constant (BC) Municipality in Brazil. b Location of windows in BC.
                                        agriculture, pasture, agroforestry, young secondary forest, and old                                                                                                                                                                        c. Distribution of sampling points in window 1 (extracted from Fidalgo et al. 2005). d
                                        secondary forest. The LNB communities were trapped from these soils by                                                                                                                                                                     Sampling point scheme: one composed soil sample (12 sub‐samples) was collected
                                        using the promiscuous host siratro under controlled conditions. We also                                                                                                                                                                    around each sampling point
                                        studied their relationships with physical and chemical attributes of the soil.


                                                                                                                  RESULTS/DISCUSSION




                                                                                                                                                                                                                                                                                                                                                                         RESULTS/DISCUSSION

                                          Phylogenetic relationships among strains isolated from siratro nodules, based on 16S rDNA
                                          partial sequences and related sequences of α‐Proteobacteria. Phylogenies were estimated
                                          by the neighbour‐joining method. Size of alignment was 386 bp, and gaps were omitted. 
                                          Bootstrap values were based on 2,000 trials. 
                                                                                                                                             CONCLUSIONS
                                        Agroforestry and agriculture soil samples induced the highest number of nodules in
                                        siratro, while forest soil samples induced the lowest number of nodules. No
                                        relationship was found between LNB and Leguminosae species diversity in the LUSs.
                                        The soil chemical variables that were most related to differences in nodule number
                                        and shoot dry matter weight of plants inoculated with soil suspensions of the LUSs
                                        were, respectively: Ca2+, Mg2+, base saturation, exchangeable bases and Cu2+; and
                                        pH, cation exchange capacity, B, Cu2+ and clay. Although, LNB communities from all                                                                                                                                                                                        Phylogenetic relationships among strains isolated from siratro nodules
                                        LUSs were efficient under controlled and similar conditions, they were found to be                                                                                                                                                                                        based on 16S rDNA sequences and related sequences of β‐Proteobacteria.
                                        composed of strains with variable efficiency: inefficient, efficient, highly efficient and                                                                                                                                                                                Phylogenies were estimated by the neighbour‐joining method. Size of
                                        superior efficiency. Efficient strains occurred at the highest frequency in all LUSs. The                                                                                                                                                                                 alignment was 537 bp, and gaps were omitted. Bootstrap values
                                        isolated strains presented similar and new sequences that were phylogenetically                                                                                                                                                                                           were based on 2,000 trials.
                                        related to well known LNB genera in α‐and β‐ Proteobacteria. Unusual genera in these                                                                                                                                                                                                Plant Soil (2009) 319:127–145  DOI 10.1007/s11104‐008‐9855‐2
                                        branches, as well as in other branches, which are probably endophytic bacteria, were
                                        also isolated from nodules. These data support siratro as a useful trap species to study                                                                                                                                                                                                                                         ACKNOWLEDGMENTS
                                        the LNB biodiversity of diverse ecosystems in tropical soils. The fact that the highest
                                        diversity and nodulation were seen in managed systems such as agriculture and                                                                                                                                                                                                       The authors aknowledge BiosBrasil Technicians Elson Gomes de
                                        agroforestry suggests a high resilience of LNB communities to changes in land use                                                                                                                                                                                                   Souza, Andson Abreu Magalhães, and the people of the
                                        after deforestation in a region where large forest areas are still preserved and can be a                                                                                                                                                                                           Communities of Nova Aliança and Guanabara 2, for their major
                                        source of propagules.                                                                                                                                                                                                                                                               contribution during field work.

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Differentiation in the fertility of inceptisols as related to land use in the upper

  • 1. Differentiation in the fertility of Inceptisols as related to land use in the upper  Solimões river region, western Amazon* Fatima Maria de Souza Moreira, Rafaela Simão Abrahão Nóbrega, Ederson da Conceição Jesus, Daniel Furtado Ferreira, Daniel Vidal Pérez *Funded by GEF-UNEP, Implemented by TSBF-CIAT INTRODUCTION MATERIALS AND METHODS The Upper Solimões river region, western Amazon, is the homeland of In March 2004, 98 composite soil samples had been collected in six windows, indigenous populations and contains small‐scale agricultural systems that of three different locations: windows 1‐2, in Guanabara II; 3‐5, in Nova Aliança; are important for biodiversity conservation. Although traditional slash 6, near the town of Benjamin Constant. The sampling comprised six major land and‐burn agriculture is being practiced over many years, deforestation use systems (LUS). Sampling points (SP) in all windows were distributed in the there is relatively small compared to other Amazon regions. Pastures are LUS as follows: 30 in Young Secondary Forest, (YSF) 10 in Old Secondary Forest restricted to the vicinity of cities and do not spread to the small c com‐ (OSF), 17 in Rain Forest (RF), 13 in Pasture (PA), 18 in Agricultures (AGRI) and munities along the river. Inceptisols are the main soil order (>90%) in the 10 in groforestry (AGRO). Spatially, the sampling points were distributed in a area and have unique attributes including high Al content and high cation grid with quadrants of 100 x 100 m. Soil samples were collected in the top exchange capacity (CEC) due to the enrichment of the clay fraction with layer (0‐20 cm). From each composite sample, a sub‐sample was removed, air 2:1 secondary aluminosilicates. Despite its importance, few studies have dried and passed through a 2 mm mesh sieve, and then submitted to analysis. focused on this soil order when considering land use effects on the fertility Plant‐available P was extracted by Mehlich 1 (HCl 0.05 mol L−1+H2SO4 0.0125 of Amazon soils. mol L−1) and analyzed by spectrophotometry at 660 nm. Soil pH was measured in a 1:2.5 soil:water suspension. Exchangeable Al, Ca and Mg were OBJECTIVE extracted with KCl 1 mol L−1. Ca and Mg were determined by atomic Thus, the objective of this study was to evaluate changes in soil fertility of  absorption pectrometry and Al by acid‐base titration. Exchangeable Na and K representative land use systems (LUSs) in the Upper Solimões region,  were extracted with Mehlich 1 and determined by photometry. Potential namely: primary rainforest, old secondary forest, young secondary forest,  acidity (H+Al) was estimated by an equation based on the pH determined in agroforestry, pasture and agriculture.  SMP buffer solution (pH SMP). Organic carbon was determined by oxidation with dichromate and total N by Kjeldahl. Available micronutrients (Fe, Mn, Zn, RESULTS and Cu) were extracted by Mehlich 1 and determined by atomic absorption spectrometry. Boron was extracted with hot water and determined by spectrophotometry with azomethine‐H at 420 nm. Sulfate was extracted with Ca(H2PO4)2 0.01 mol L−1 and determined by spectrophotometry at 420 nm. Dendrogram based on Mahalanobis Linkage distance  considering  Biplot of 98 soil samples distributed in 6 windows and comprising 6 land 22 soil chemical and physical variates among land use systems. use systems in the Western Brazilian Amazon, against values for the first two principal components, PC1 and PC2, for soil chemical and physical CONCLUSIONS attributes. Vectors represent edaphic variables that have a high loading on PC1 and PC2 and that are significant correlated with the ordination LUSs were significantly differentiated by the chemical attributes of their topsoil (0–20 axes (P<0.05). Each vector points to the direction of increase for a given cm). Secondary forests presented soil chemical attributes more similar to primary variable and its length indicates the strength of the correlation between rainforest areas, while pastures exhibited the highest dissimilarity from all the other the variable and the ordination scores. Ellipses were arbitrarily added in LUSs. As a whole, soil chemical changes among Inceptisols dominated LUSs showed order to help in interpretation and their color refer to the main land use patterns that were distinct from those reported from other Amazon soils like Oxisols system included. and Ultisols. This is probably related to the presence of high‐activity clays enriched in exchangeable aluminum that heavily influenced the soil chemical reactions over the expected importance of organic matter found in most studies conducted over Oxisol ACKNOWLEDGMENTS and Ultisol. The authors aknowledge BiosBrasil Technicians Elson Gomes de Souza and Andson Abreu Magalhães, and the people of the Communities of Nova Aliança and Guanabara 2, for Science of the Total Environment 408 (2009) 349–355 their major contribution during field work.
  • 2. Phylogenetic relationships among strains isolated from siratro nodules after inoculation of soil samples from diverse land use systems under axenic conditions, based on 16S rDNA sequences and related sequences of β-Proteobacteria. Phylogenies were estimated by the neighbour-joining method. Size of alignment was 537 bp, and gaps were omitted. Bootstrap values were based on 2,000 trials. Nitrogen‐fixing bacteria communities occurring in soils under different uses In the Western Amazon region as indicated by nodulation of siratro (Macroptilium atropurpureum)* Adriana Silva Lima ,  Rafaela Simão Abrahão Nóbrega,  Alexandre Barberi ,  Krisle da Silva,  Daniel Furtado Ferreira , Fatima Maria de Souza Moreira *Funded  by GEF‐UNEP, Implemented  by TSBF‐CIAT INTRODUCTION MATERIALS AND METHODS Understanding native communities is a crucial step for the management of biological nitrogen fixation, since they may be either a source of efficient strains or a limiting factor when efficient strains need to be introduced. OBJECTIVE Sampling point (SP) geo-referenced Sub-sample points around SP This work aimed to evaluate the density, diversity and efficiency of Leguminosae nodulating bacterial (LNB) communities and their component strains in soils under various land use systems (LUSs): pristine forest, a Location of Benjamin Constant (BC) Municipality in Brazil. b Location of windows in BC. agriculture, pasture, agroforestry, young secondary forest, and old c. Distribution of sampling points in window 1 (extracted from Fidalgo et al. 2005). d secondary forest. The LNB communities were trapped from these soils by Sampling point scheme: one composed soil sample (12 sub‐samples) was collected using the promiscuous host siratro under controlled conditions. We also around each sampling point studied their relationships with physical and chemical attributes of the soil. RESULTS/DISCUSSION RESULTS/DISCUSSION Phylogenetic relationships among strains isolated from siratro nodules, based on 16S rDNA partial sequences and related sequences of α‐Proteobacteria. Phylogenies were estimated by the neighbour‐joining method. Size of alignment was 386 bp, and gaps were omitted.  Bootstrap values were based on 2,000 trials.  CONCLUSIONS Agroforestry and agriculture soil samples induced the highest number of nodules in siratro, while forest soil samples induced the lowest number of nodules. No relationship was found between LNB and Leguminosae species diversity in the LUSs. The soil chemical variables that were most related to differences in nodule number and shoot dry matter weight of plants inoculated with soil suspensions of the LUSs were, respectively: Ca2+, Mg2+, base saturation, exchangeable bases and Cu2+; and pH, cation exchange capacity, B, Cu2+ and clay. Although, LNB communities from all Phylogenetic relationships among strains isolated from siratro nodules LUSs were efficient under controlled and similar conditions, they were found to be based on 16S rDNA sequences and related sequences of β‐Proteobacteria. composed of strains with variable efficiency: inefficient, efficient, highly efficient and Phylogenies were estimated by the neighbour‐joining method. Size of superior efficiency. Efficient strains occurred at the highest frequency in all LUSs. The alignment was 537 bp, and gaps were omitted. Bootstrap values isolated strains presented similar and new sequences that were phylogenetically were based on 2,000 trials. related to well known LNB genera in α‐and β‐ Proteobacteria. Unusual genera in these Plant Soil (2009) 319:127–145  DOI 10.1007/s11104‐008‐9855‐2 branches, as well as in other branches, which are probably endophytic bacteria, were also isolated from nodules. These data support siratro as a useful trap species to study ACKNOWLEDGMENTS the LNB biodiversity of diverse ecosystems in tropical soils. The fact that the highest diversity and nodulation were seen in managed systems such as agriculture and The authors aknowledge BiosBrasil Technicians Elson Gomes de agroforestry suggests a high resilience of LNB communities to changes in land use Souza, Andson Abreu Magalhães, and the people of the after deforestation in a region where large forest areas are still preserved and can be a Communities of Nova Aliança and Guanabara 2, for their major source of propagules. contribution during field work.