ChemSpider – A Community Platform for Chemistry and Resources Supporting the Life Sciences
ChemSpider was developed with the intention of aggregating and indexing available sources of chemical structures and their associated information into a single searchable repository and making it available to everybody, at no charge. There are many tens of chemical structure databases such as literature data, chemical vendor catalogs, molecular properties, environmental data, toxicity data, analytical data etc. and no single way to search across them. Despite the diversity of databases available online their inherent quality, accuracy and completeness is lacking in many regards. ChemSpider was established to provide a platform whereby the chemistry community could contribute to cleaning up the data, improving the quality of data online and expanding the information available to include data such as reaction syntheses, analytical data and experimental properties. ChemSpider has now grown into a database of over 20 million chemical substances integrated with over 300 disparate data sources, many of these directly supporting the Life Sciences. This presentation will provide an overview of our efforts to improve the quality of data online, to provide a foundation for the semantic web for chemistry and to provide access to a set online tools and services to support access to these data. I will also discuss how ChemSpider is being used to enhance Semantic Publishing in Chemistry at RSC.
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ChemSpider – A Community Platform for Chemistry and Resources Supporting the Life Sciences
- 1. ChemSpider – A Community Platform for Chemistry and Resources Supporting the Life Sciences
- 6. The Final Search Strategy
- 7. All Those Names, One Structure A problem to solve…
- 10. Where Would You look? What Do You Trust?
- 11. Question Everything online: www.dhmo.org
- 16. It’s all on Wikipedia…
- 17. Chemistry on The Internet Is Messy
- 18. It’s Methane…
- 19. What’s Methane?
- 20. What’s Methane?
- 21. What ELSE is Methane???
- 22. Drugs are REALLY Messy
- 24. The EXPERTS must get it right?!
- 27. Structural Data for LifeSciences DailyMed
- 29. Incorrect Structures
- 30. Ugh…
- 42. A Link Farm to Content
- 43. Linked across the internet
- 44. Kyoto Encyclopedia of Genes and Genomes
- 45. Linking SMPDB
- 46. Links to Patents based on structure
- 47. Articles Linked
- 49. Search “OEA”
- 50. Search OEA
- 51. Search OEA
- 52. Search OEA
- 53. Linked Patents for OEA
- 58. Multiple Layers
- 59. InChIStrings Hash to InChIKeys
- 60. Link the Internet with InChIKeys! Taken from: Rafael Sidis’ Blog
- 61. Vancomycin – Search the Internet
- 62. Vancomycin Search Molecular SKELETON Search Full Molecule
- 63. Full Molecule Search: 4 Hits
- 64. Full Skeleton Search: 104 Hits
- 68. Vancomycin
- 69. Vancomycin on ChemSpider 1 compound – 3 days
- 70. InChIKeys Make the internet searchable by adding InChIKeys Publishers add InChIKeys to papers now…
- 71. InChIKeys Make the internet searchable by adding InChIKeys Publishers add InChIKeys to papers now… is what???
- 73. InChI Resolver to DOIs Structure Search the Web
- 75. The CAS Registry
- 76. CAS Registry
- 78. Multi-level Curation and Approval Building a Structure Centric Community for Chemists
- 80. Semantic Markup: Project Prospect
- 81. Success Depends on Dictionaries Link to a Structure or the Right Structure?
- 84. Org Prep Daily (Blog)
- 89. Thank you [email_address] Twitter: ChemSpiderman www.chemspider.com/blog SLIDES: www.slideshare.net/AntonyWilliams