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Chapter 18




Classification
18 – 1 Finding Order
    in Diversity
• Evolution has lead to a staggering
  variety or organisms
• Biologists have identified and
  named about 1.5 million species
  so far
• They estimate anywhere between
  2 and 100 million additional
  species have yet to be discovered
Taxonomy
• The science of classifying and
  naming organisms
Assigning Scientific Names
• By the 18th century, European
  scientists recognized that
  referring to organisms by common
  names was confusing
• Common names vary among
  regions within a country
Mountain Lion
Cougar
Puma
Panther
Early Efforts at Naming
        Organisms
• First attempts at standard scientific names
  often described physical characteristics
• As a result, these names could be 20
  words long!
• Ex.) The English translation of the
  scientific name of a particular tree might
  be “Oak with deeply divided leaves that
  have no hairs on their undersides and no
  teeth around their edges.”
Binomial Nomenclature
• Carolus Linnaeus (18th Century)
• Swedish Botanist
• Developed a system for naming
  organisms
Binomial Nomenclature
• Two word naming system
Rules for Binomial
      Nomenclature
• Written in italics
• First word is capitalized
• Second word is lowercased
Ex.)
Genus species
Genus species
G. species
• The name often tells you something
  about the species
• Ex.) Tyranosaurus Rex
• Tyrant Lizard King
Taxon (taxonomic category)
• A group or level of organization
Linnaeus’s system of classification
uses seven taxonomic categories
           Largest / Least
Kingdom    Specific
Phylum
Class
Order
Family
Genus        Smallest /
             Most Specific
species
Mnemonic Device
 Kingdom   •   King
 Phylum    •   Phillip
 Class     •   Came
 Order     •   Over
 Family    •   For
 Genus     •   Good
 species   •   Soup
18 -2 Modern Evolutionary
      Classification
Problems with Traditional Classification

 • Sometimes, due to convergent
   Evolution organisms that are quite
   different from each other evolve
   similar body structures
 • Ex.) Crab, limpet, barnacle
Evolutionary Classification
• Darwin’s theory of evolution
  changed the entire way that
  biologists thought about
  classification
• Biologists now group organisms
  into categories that represent
  lines of evolutionary descent, not
  just physical similarities
Classification Using
          Cladograms
• Many biologists now prefer a
  method called cladistic analysis
• This method of classification
  identifies and considers only
  those characteristics that arise as
  lineages evolve over time
Derived characteristics
• Characteristics that appear in
  recent parts of a lineage but not in
  its older members
Cladograms
• Diagram that shows the
  evolutionary relationships among
  a group of organisms
Similarities in DNA and RNA
• Suppose you were trying to compare
  diverse organisms such as yeast and
  humans
• It wouldn’t make sense to try to classify
  anatomical similarities
• The genes of many organisms show
  important similarities at the molecular level
• These similarities can be used as criteria
  to help determine classification
• Ex.) Myosin in humans & yeast
Molecular Clocks
• Use DNA comparison to estimate
  the length of time that two species
  have been evolving independently
Molecular Clocks
• Mutations happen all the time at
  about the same rate
• A comparison of DNA sequences in
  two species can reveal how dissimilar
  the genes are
• The degree of dissimilarity is an
  indication of how long ago the two
  species shared a common ancestor
18 -3 Kingdoms and
      Domains
• In taxonomy, as in all areas of
  science, ideas and models change as
  new information arises, some
  explanations have been discarded
  altogether, whereas others such as
  Darwin’s theory of evolution by natural
  selection, have been upheld
• So it should not be surprising that
  since the 1800’s, the tree of life has
  been revised and edited since the
  discovery of all this new information
The Tree of Life Evolves
• Before Linnaeus’s time, the only
  two Kingdoms that existed were
  Plants and Animals
• As scientists discovered new
  organisms that didn’t fit into the
  plant or animal category, they
  made a new category
The Old 5 Kingdom System
1.   Animals
2.   Plants
3.   Fungi
4.   Protist
5.   Bacteria
• In recent years, as evidence
  about microorganisms continued
  to accumulate, biologists come to
  recognize that the Monera were
  composed of two distinct groups
The New 6 Kingdom System
1.   Animals
2.   Plants
3.   Fungi
4.   Protist
5.   Eubacteria
6.   Archaebacteria
The Three Domain System
• Molecular analysis has given rise
  to a new taxonomic category that
  is now recognized by many
  scientists
Domain
• Larger than a kingdom
3 Domains
1. Bacteria
• Eubacteria
2. Archaea
• Archaebacteria
3. Eukarya
• Protists, fungi, plants, animals
   (Everything with a nucleus)
Domain Bacteria
• Unicellular
• Prokaryotic - no nucleus, no membrane
  bound organelles
• Thick walls (containing peptigoglycan)
• Free living and parasitic
• Important decomposers
• Some photosynthesize
• Some don’t need oxygen
  – Anerobic
• Some need oxygen
  – Aerobic
Agar


      Bacteria
      Colonies
Petri dish
What is this
used for?
Domain Archaea
•Unicellular
•Small
•Prokaryotic
•Live in extreme environments
Ex.) volcanic hotsprings, brine
 pools, black organic mud without
 oxygen
• Acidophiles – live in acidic
  environments
• Thermophiles – can tolerate hot
  temperatures 50 – 110 degrees
• Halophiles – can stand extreme
  concentrations of NaCl
• Methanogens – Produce methane
      CO2 + H  CH4
Acidophiles
Thermophile
Halophile
Domain Eukarya
• Consists of all organisms that
  have a nucleus
Protista
• Small
• Mostly unicellular
• Eukaryotic – has a nucleus, and
  membrane bound organelles
• Cannot be classified as animals,
  plants or fungi, but share many
  characteristics with plants,
  animals and fungi
Plant like Protists
• Algae
• Photosynthetic – can make their
  own food
Euglenas




           Flagella
Diatoms
Dinoflagellates
Dinoflagellates
• Red tide
Green Algae
Red Algae
Brown Algae
Animal like Protists
• Protozoans
• Heterotrophic – can’t make their
  own food
Fungus like Protists
• Slime molds, water molds
• Decompose their food
Fungi
• Mostly multicellular
Ex.) Mushroom, yeast
• Cell walls
Fungi
• Heterotrophs
• Feed on decaying organic matter
• Secrete digestive enzymes into
  food source then
• Spread and reproduce by spores
Spores
• Reproductive cells that form new
  organisms without fertilization
Many are used in medicine
• Antibiotics
• Anti rejection
• Anti viral
Penicillium
Plantae
• Multicellular
• Photosynthetic autotrophs – make
  their own food by photosynthesis
• Non-motile
• Cell walls (cellulose)
Animalia
•   Multicellular
•   Heterotrophic
•   No cell walls
•   Most move
•   Incredible diversity

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Biology - Chp 18 - Classification - PowerPoint

  • 2.
  • 3. 18 – 1 Finding Order in Diversity
  • 4. • Evolution has lead to a staggering variety or organisms • Biologists have identified and named about 1.5 million species so far • They estimate anywhere between 2 and 100 million additional species have yet to be discovered
  • 5. Taxonomy • The science of classifying and naming organisms
  • 6. Assigning Scientific Names • By the 18th century, European scientists recognized that referring to organisms by common names was confusing • Common names vary among regions within a country
  • 11. Early Efforts at Naming Organisms • First attempts at standard scientific names often described physical characteristics • As a result, these names could be 20 words long! • Ex.) The English translation of the scientific name of a particular tree might be “Oak with deeply divided leaves that have no hairs on their undersides and no teeth around their edges.”
  • 12. Binomial Nomenclature • Carolus Linnaeus (18th Century) • Swedish Botanist • Developed a system for naming organisms
  • 13. Binomial Nomenclature • Two word naming system
  • 14. Rules for Binomial Nomenclature • Written in italics • First word is capitalized • Second word is lowercased Ex.) Genus species Genus species G. species
  • 15. • The name often tells you something about the species • Ex.) Tyranosaurus Rex • Tyrant Lizard King
  • 16.
  • 17. Taxon (taxonomic category) • A group or level of organization
  • 18.
  • 19. Linnaeus’s system of classification uses seven taxonomic categories Largest / Least Kingdom Specific Phylum Class Order Family Genus Smallest / Most Specific species
  • 20. Mnemonic Device Kingdom • King Phylum • Phillip Class • Came Order • Over Family • For Genus • Good species • Soup
  • 21.
  • 22. 18 -2 Modern Evolutionary Classification
  • 23. Problems with Traditional Classification • Sometimes, due to convergent Evolution organisms that are quite different from each other evolve similar body structures • Ex.) Crab, limpet, barnacle
  • 24.
  • 25. Evolutionary Classification • Darwin’s theory of evolution changed the entire way that biologists thought about classification • Biologists now group organisms into categories that represent lines of evolutionary descent, not just physical similarities
  • 26. Classification Using Cladograms • Many biologists now prefer a method called cladistic analysis • This method of classification identifies and considers only those characteristics that arise as lineages evolve over time
  • 27. Derived characteristics • Characteristics that appear in recent parts of a lineage but not in its older members
  • 28. Cladograms • Diagram that shows the evolutionary relationships among a group of organisms
  • 29.
  • 30. Similarities in DNA and RNA • Suppose you were trying to compare diverse organisms such as yeast and humans • It wouldn’t make sense to try to classify anatomical similarities • The genes of many organisms show important similarities at the molecular level • These similarities can be used as criteria to help determine classification • Ex.) Myosin in humans & yeast
  • 31. Molecular Clocks • Use DNA comparison to estimate the length of time that two species have been evolving independently
  • 32. Molecular Clocks • Mutations happen all the time at about the same rate • A comparison of DNA sequences in two species can reveal how dissimilar the genes are • The degree of dissimilarity is an indication of how long ago the two species shared a common ancestor
  • 33.
  • 34. 18 -3 Kingdoms and Domains
  • 35. • In taxonomy, as in all areas of science, ideas and models change as new information arises, some explanations have been discarded altogether, whereas others such as Darwin’s theory of evolution by natural selection, have been upheld • So it should not be surprising that since the 1800’s, the tree of life has been revised and edited since the discovery of all this new information
  • 36. The Tree of Life Evolves • Before Linnaeus’s time, the only two Kingdoms that existed were Plants and Animals • As scientists discovered new organisms that didn’t fit into the plant or animal category, they made a new category
  • 37. The Old 5 Kingdom System 1. Animals 2. Plants 3. Fungi 4. Protist 5. Bacteria
  • 38. • In recent years, as evidence about microorganisms continued to accumulate, biologists come to recognize that the Monera were composed of two distinct groups
  • 39. The New 6 Kingdom System 1. Animals 2. Plants 3. Fungi 4. Protist 5. Eubacteria 6. Archaebacteria
  • 40.
  • 41. The Three Domain System • Molecular analysis has given rise to a new taxonomic category that is now recognized by many scientists
  • 43. 3 Domains 1. Bacteria • Eubacteria 2. Archaea • Archaebacteria 3. Eukarya • Protists, fungi, plants, animals (Everything with a nucleus)
  • 44. Domain Bacteria • Unicellular • Prokaryotic - no nucleus, no membrane bound organelles • Thick walls (containing peptigoglycan) • Free living and parasitic • Important decomposers • Some photosynthesize • Some don’t need oxygen – Anerobic • Some need oxygen – Aerobic
  • 45.
  • 46.
  • 47.
  • 48. Agar Bacteria Colonies Petri dish
  • 50.
  • 51. Domain Archaea •Unicellular •Small •Prokaryotic •Live in extreme environments Ex.) volcanic hotsprings, brine pools, black organic mud without oxygen
  • 52. • Acidophiles – live in acidic environments • Thermophiles – can tolerate hot temperatures 50 – 110 degrees • Halophiles – can stand extreme concentrations of NaCl • Methanogens – Produce methane CO2 + H  CH4
  • 56. Domain Eukarya • Consists of all organisms that have a nucleus
  • 57. Protista • Small • Mostly unicellular • Eukaryotic – has a nucleus, and membrane bound organelles • Cannot be classified as animals, plants or fungi, but share many characteristics with plants, animals and fungi
  • 58. Plant like Protists • Algae • Photosynthetic – can make their own food
  • 59. Euglenas Flagella
  • 66. Animal like Protists • Protozoans • Heterotrophic – can’t make their own food
  • 67.
  • 68.
  • 69.
  • 70. Fungus like Protists • Slime molds, water molds • Decompose their food
  • 71.
  • 72. Fungi • Mostly multicellular Ex.) Mushroom, yeast • Cell walls
  • 73. Fungi • Heterotrophs • Feed on decaying organic matter • Secrete digestive enzymes into food source then • Spread and reproduce by spores
  • 74. Spores • Reproductive cells that form new organisms without fertilization
  • 75. Many are used in medicine • Antibiotics • Anti rejection • Anti viral
  • 77. Plantae • Multicellular • Photosynthetic autotrophs – make their own food by photosynthesis • Non-motile • Cell walls (cellulose)
  • 78. Animalia • Multicellular • Heterotrophic • No cell walls • Most move • Incredible diversity